Wall clock time and date at job start Tue Mar 31 2020 19:18:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42903 * 113.99978 * 2 1 4 4 C 1.50696 * 109.47070 * 179.97438 * 3 2 1 5 5 N 1.30453 * 125.98997 * 90.02624 * 4 3 2 6 6 N 1.39931 * 108.89895 * 179.97438 * 5 4 3 7 7 C 1.46504 * 125.75427 * 180.02562 * 6 5 4 8 8 C 1.34262 * 108.49137 * 359.97438 * 6 5 4 9 9 C 1.38043 * 107.41777 * 0.02562 * 8 6 5 10 10 C 1.47424 * 126.41610 * 179.97438 * 9 8 6 11 11 O 1.21606 * 120.00346 * 174.31133 * 10 9 8 12 12 N 1.34774 * 119.99850 * 354.31364 * 10 9 8 13 13 C 1.47424 * 125.64949 * 184.37106 * 12 10 9 14 14 C 1.55127 * 104.72469 * 155.81653 * 13 12 10 15 15 H 1.09001 * 111.22836 * 279.17909 * 14 13 12 16 16 C 1.53003 * 110.90778 * 155.27518 * 14 13 12 17 17 C 1.55158 * 101.48563 * 37.29446 * 14 13 12 18 18 H 1.09006 * 110.87433 * 82.76786 * 17 14 13 19 19 C 1.52996 * 110.72132 * 205.97031 * 17 14 13 20 20 N 1.46505 * 109.47402 * 179.97438 * 19 17 14 21 21 C 1.36932 * 120.00162 * 180.02562 * 20 19 17 22 22 H 1.08007 * 120.00168 * 359.97438 * 21 20 19 23 23 C 1.38813 * 120.00118 * 180.02562 * 21 20 19 24 24 N 1.31615 * 119.99761 * 359.97438 * 23 21 20 25 25 Si 1.86796 * 120.00119 * 179.97438 * 23 21 20 26 26 H 1.48503 * 109.47632 * 59.99431 * 25 23 21 27 27 H 1.48494 * 109.47227 * 179.97438 * 25 23 21 28 28 H 1.48505 * 109.46911 * 299.99639 * 25 23 21 29 29 C 1.47024 * 125.64973 * 4.67757 * 12 10 9 30 30 H 1.08997 * 109.47277 * 60.00810 * 1 2 3 31 31 H 1.09002 * 109.47055 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47525 * 300.00227 * 1 2 3 33 33 H 1.08994 * 109.46988 * 59.99307 * 3 2 1 34 34 H 1.09005 * 109.46568 * 299.99697 * 3 2 1 35 35 H 1.09001 * 109.46699 * 269.99366 * 7 6 5 36 36 H 1.09000 * 109.46730 * 29.99200 * 7 6 5 37 37 H 1.08991 * 109.47203 * 149.99635 * 7 6 5 38 38 H 1.08005 * 126.28851 * 179.74165 * 8 6 5 39 39 H 1.09007 * 110.36409 * 274.74651 * 13 12 10 40 40 H 1.08998 * 110.36840 * 37.06388 * 13 12 10 41 41 H 1.09001 * 109.47200 * 307.97359 * 16 14 13 42 42 H 1.08999 * 109.47321 * 67.97628 * 16 14 13 43 43 H 1.09004 * 109.47235 * 187.98184 * 16 14 13 44 44 H 1.09007 * 109.47090 * 299.97924 * 19 17 14 45 45 H 1.08997 * 109.47415 * 59.97399 * 19 17 14 46 46 H 0.97000 * 119.99497 * 359.97438 * 20 19 17 47 47 H 0.97003 * 119.99967 * 180.02562 * 24 23 21 48 48 H 1.09007 * 109.88396 * 300.44095 * 29 12 10 49 49 H 1.08999 * 109.88266 * 61.45042 * 29 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5124 1.1865 0.0006 5 7 4.2771 1.1262 -1.0546 6 7 5.6103 1.0211 -0.6427 7 6 6.7748 0.9299 -1.5271 8 6 5.6425 1.0191 0.6995 9 6 4.3397 1.1216 1.1442 10 6 3.8948 1.1565 2.5493 11 8 2.7238 1.3533 2.8116 12 7 4.7859 0.9703 3.5431 13 6 4.4660 0.8897 4.9800 14 6 5.6357 0.0807 5.5995 15 1 5.4974 -0.9902 5.4507 16 6 5.7996 0.4083 7.0850 17 6 6.8431 0.6049 4.7779 18 1 7.2125 1.5452 5.1872 19 6 7.9605 -0.4392 4.7316 20 7 9.0845 0.0827 3.9501 21 6 10.2065 -0.6813 3.7701 22 1 10.2631 -1.6685 4.2045 23 6 11.2717 -0.1865 3.0301 24 7 11.2029 1.0167 2.5011 25 14 12.8026 -1.2285 2.7851 26 1 12.4376 -2.4890 2.0899 27 1 13.7860 -0.4778 1.9639 28 1 13.4010 -1.5473 4.1063 29 6 6.2387 0.8203 3.3744 30 1 -0.3634 0.5137 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5139 0.8899 33 1 1.6885 1.8464 0.8899 34 1 1.6885 1.8463 -0.8901 35 1 6.9829 -0.1173 -1.7468 36 1 6.5682 1.4619 -2.4558 37 1 7.6393 1.3770 -1.0367 38 1 6.5251 0.9457 1.3176 39 1 4.4199 1.8881 5.4149 40 1 3.5219 0.3659 5.1297 41 1 5.8672 1.4886 7.2136 42 1 4.9397 0.0297 7.6376 43 1 6.7088 -0.0600 7.4622 44 1 8.2942 -0.6595 5.7457 45 1 7.5867 -1.3511 4.2660 46 1 9.0335 0.9692 3.5597 47 1 11.9471 1.3623 1.9837 48 1 6.4515 -0.0422 2.7427 49 1 6.6545 1.7214 2.9235 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001279112100.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:18:19 Heat of formation + Delta-G solvation = 18.007270 kcal Electronic energy + Delta-G solvation = -30022.464016 eV Core-core repulsion = 25987.198320 eV Total energy + Delta-G solvation = -4035.265697 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.49856 -39.70059 -37.87445 -37.51557 -34.66497 -33.59138 -33.13004 -31.57908 -30.41703 -29.11027 -28.94567 -26.87866 -26.21723 -25.61687 -24.86299 -23.39748 -22.11981 -20.82566 -20.57392 -19.93811 -19.21504 -17.27936 -16.88001 -16.51352 -16.28610 -15.98337 -15.71617 -15.49694 -15.21040 -14.93609 -14.75650 -14.28179 -14.11857 -13.76979 -13.41302 -13.23551 -13.01044 -12.91589 -12.79114 -12.52475 -12.37813 -12.34652 -12.19888 -12.00528 -11.85906 -11.44597 -11.35600 -11.13848 -11.00634 -10.89176 -10.58094 -10.48555 -10.40535 -10.10645 -9.91687 -9.74511 -9.50963 -9.45771 -8.97266 -8.72004 -8.41651 -7.03992 -5.87557 -3.16249 1.57023 1.98529 2.31772 3.15651 3.36925 3.42231 3.42683 3.48914 3.98648 4.37172 4.46527 4.55358 4.67157 4.75769 4.90922 4.95676 5.09972 5.12428 5.14583 5.26064 5.32500 5.35252 5.41392 5.41657 5.46587 5.48667 5.49900 5.52949 5.59573 5.64589 5.75264 5.81620 5.86553 5.89937 5.99082 6.04961 6.18248 6.24343 6.33656 6.36348 6.46958 6.64579 6.76783 6.79331 7.09310 7.52902 7.60951 7.70233 8.31295 8.39794 9.43139 9.98531 10.33698 11.35009 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.010616 B = 0.003567 C = 0.002800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2636.885799 B = 7848.354607 C = 9999.321087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.382 6.382 3 C 0.143 3.857 4 C 0.126 3.874 5 N -0.286 5.286 6 N -0.354 5.354 7 C 0.094 3.906 8 C 0.099 3.901 9 C -0.278 4.278 10 C 0.613 3.387 11 O -0.550 6.550 12 N -0.616 5.616 13 C 0.116 3.884 14 C -0.099 4.099 15 H 0.086 0.914 16 C -0.139 4.139 17 C -0.100 4.100 18 H 0.088 0.912 19 C 0.163 3.837 20 N -0.733 5.733 21 C -0.239 4.239 22 H 0.070 0.930 23 C -0.012 4.012 24 N -0.934 5.934 25 Si 0.906 3.094 26 H -0.286 1.286 27 H -0.291 1.291 28 H -0.286 1.286 29 C 0.100 3.900 30 H 0.039 0.961 31 H 0.085 0.915 32 H 0.045 0.955 33 H 0.090 0.910 34 H 0.060 0.940 35 H 0.083 0.917 36 H 0.092 0.908 37 H 0.100 0.900 38 H 0.201 0.799 39 H 0.067 0.933 40 H 0.075 0.925 41 H 0.057 0.943 42 H 0.055 0.945 43 H 0.064 0.936 44 H 0.026 0.974 45 H 0.022 0.978 46 H 0.383 0.617 47 H 0.256 0.744 48 H 0.078 0.922 49 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.549 1.531 -1.685 15.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.300 6.300 3 C 0.065 3.935 4 C -0.042 4.042 5 N -0.110 5.110 6 N -0.132 5.132 7 C -0.047 4.047 8 C -0.052 4.052 9 C -0.293 4.293 10 C 0.404 3.596 11 O -0.429 6.429 12 N -0.349 5.349 13 C -0.007 4.007 14 C -0.119 4.119 15 H 0.105 0.895 16 C -0.196 4.196 17 C -0.119 4.119 18 H 0.106 0.894 19 C 0.035 3.965 20 N -0.377 5.377 21 C -0.370 4.370 22 H 0.088 0.912 23 C -0.208 4.208 24 N -0.583 5.583 25 Si 0.737 3.263 26 H -0.213 1.213 27 H -0.217 1.217 28 H -0.212 1.212 29 C -0.022 4.022 30 H 0.058 0.942 31 H 0.103 0.897 32 H 0.063 0.937 33 H 0.108 0.892 34 H 0.078 0.922 35 H 0.101 0.899 36 H 0.111 0.889 37 H 0.119 0.881 38 H 0.218 0.782 39 H 0.085 0.915 40 H 0.094 0.906 41 H 0.076 0.924 42 H 0.074 0.926 43 H 0.083 0.917 44 H 0.044 0.956 45 H 0.040 0.960 46 H 0.216 0.784 47 H 0.065 0.935 48 H 0.096 0.904 49 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -15.826 1.331 -3.010 16.165 hybrid contribution 1.088 -0.083 0.452 1.181 sum -14.739 1.249 -2.558 15.011 Atomic orbital electron populations 1.22713 0.80724 1.02683 1.00014 1.87912 1.19726 1.26855 1.95472 1.20688 0.85044 0.85713 1.02097 1.21843 0.95418 0.97728 0.89175 1.77092 0.86722 1.24437 1.22701 1.48374 1.06134 1.53522 1.05175 1.22111 0.83828 1.04238 0.94517 1.24124 0.99917 0.96011 0.85190 1.20074 0.92218 1.22927 0.94102 1.16798 0.84244 0.75723 0.82872 1.90694 1.17016 1.51166 1.84014 1.48292 1.07704 1.72279 1.06652 1.22306 0.98539 0.99986 0.79834 1.22423 0.93923 1.00272 0.95291 0.89528 1.21684 1.02037 1.01798 0.94119 1.22518 0.95177 1.00939 0.93282 0.89404 1.20672 0.86924 0.93540 0.95384 1.42349 1.14430 1.18855 1.62099 1.19176 0.93113 0.97915 1.26842 0.91222 1.24701 0.98483 0.96803 1.00769 1.69631 1.32338 1.16616 1.39725 0.86293 0.83042 0.79307 0.77698 1.21281 1.21702 1.21247 1.22440 0.79211 1.01576 0.99009 0.94222 0.89691 0.93658 0.89215 0.92180 0.89890 0.88950 0.88127 0.78236 0.91489 0.90618 0.92411 0.92597 0.91678 0.95604 0.95979 0.78381 0.93462 0.90426 0.91062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.37 11.01 101.05 1.11 1.48 16 2 O -0.38 -5.69 10.69 -35.23 -0.38 -6.07 16 3 C 0.14 2.03 6.03 36.00 0.22 2.25 16 4 C 0.13 2.03 6.89 -82.02 -0.57 1.47 16 5 N -0.29 -4.54 12.50 33.90 0.42 -4.12 16 6 N -0.35 -4.99 3.98 -67.60 -0.27 -5.25 16 7 C 0.09 0.95 11.44 59.85 0.68 1.63 16 8 C 0.10 1.44 9.97 -16.56 -0.17 1.27 16 9 C -0.28 -4.49 6.09 -105.07 -0.64 -5.13 16 10 C 0.61 10.26 7.84 -12.52 -0.10 10.16 16 11 O -0.55 -10.19 15.18 5.27 0.08 -10.11 16 12 N -0.62 -9.10 3.32 -171.64 -0.57 -9.67 16 13 C 0.12 1.49 6.36 -2.41 -0.02 1.47 16 14 C -0.10 -1.19 3.10 -88.35 -0.27 -1.47 16 15 H 0.09 1.06 8.05 -51.93 -0.42 0.64 16 16 C -0.14 -1.42 9.31 37.16 0.35 -1.07 16 17 C -0.10 -1.42 2.48 -88.79 -0.22 -1.64 16 18 H 0.09 1.27 8.04 -51.93 -0.42 0.86 16 19 C 0.16 2.89 5.58 -4.04 -0.02 2.87 16 20 N -0.73 -16.57 5.45 -59.91 -0.33 -16.90 16 21 C -0.24 -6.20 9.99 -15.06 -0.15 -6.35 16 22 H 0.07 1.77 7.83 -52.48 -0.41 1.36 16 23 C -0.01 -0.31 5.50 -17.43 -0.10 -0.41 16 24 N -0.93 -26.05 13.06 55.49 0.72 -25.33 16 25 Si 0.91 21.22 29.55 -169.99 -5.02 16.20 16 26 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 27 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 28 H -0.29 -6.67 7.11 56.52 0.40 -6.26 16 29 C 0.10 1.44 4.28 -3.06 -0.01 1.42 16 30 H 0.04 0.34 8.14 -51.93 -0.42 -0.09 16 31 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.09 1.30 6.45 -51.93 -0.34 0.97 16 34 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.10 0.93 8.14 -51.93 -0.42 0.50 16 38 H 0.20 2.72 4.46 -52.48 -0.23 2.48 16 39 H 0.07 0.82 7.99 -51.93 -0.41 0.40 16 40 H 0.08 0.98 8.08 -51.93 -0.42 0.56 16 41 H 0.06 0.57 8.07 -51.93 -0.42 0.15 16 42 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 44 H 0.03 0.47 8.14 -51.92 -0.42 0.05 16 45 H 0.02 0.41 8.06 -51.93 -0.42 -0.01 16 46 H 0.38 8.97 7.52 -40.82 -0.31 8.66 16 47 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 48 H 0.08 1.18 6.38 -51.93 -0.33 0.85 16 49 H 0.07 1.01 7.10 -51.93 -0.37 0.64 16 LS Contribution 398.70 15.07 6.01 6.01 Total: -1.00 -32.83 398.70 -7.09 -39.92 By element: Atomic # 1 Polarization: 15.24 SS G_CDS: -7.86 Total: 7.38 kcal Atomic # 6 Polarization: 7.85 SS G_CDS: 0.10 Total: 7.95 kcal Atomic # 7 Polarization: -61.26 SS G_CDS: -0.02 Total: -61.28 kcal Atomic # 8 Polarization: -15.89 SS G_CDS: -0.30 Total: -16.18 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -32.83 -7.09 -39.92 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001279112100.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.928 kcal (2) G-P(sol) polarization free energy of solvation -32.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.921 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds