Wall clock time and date at job start Tue Mar 31 2020 19:18:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42903 * 113.99978 * 2 1 4 4 C 1.50696 * 109.47070 * 179.97438 * 3 2 1 5 5 N 1.30453 * 125.98997 * 90.02624 * 4 3 2 6 6 N 1.39931 * 108.89895 * 179.97438 * 5 4 3 7 7 C 1.46504 * 125.75427 * 180.02562 * 6 5 4 8 8 C 1.34262 * 108.49137 * 359.97438 * 6 5 4 9 9 C 1.38043 * 107.41777 * 0.02562 * 8 6 5 10 10 C 1.47424 * 126.41610 * 179.97438 * 9 8 6 11 11 O 1.21606 * 120.00346 * 174.31133 * 10 9 8 12 12 N 1.34774 * 119.99850 * 354.31364 * 10 9 8 13 13 C 1.47424 * 125.64949 * 184.37106 * 12 10 9 14 14 C 1.55127 * 104.72469 * 155.81653 * 13 12 10 15 15 H 1.09001 * 111.22836 * 279.17909 * 14 13 12 16 16 C 1.53003 * 110.90778 * 155.27518 * 14 13 12 17 17 C 1.55158 * 101.48563 * 37.29446 * 14 13 12 18 18 H 1.09006 * 110.87433 * 82.76786 * 17 14 13 19 19 C 1.52996 * 110.72132 * 205.97031 * 17 14 13 20 20 N 1.46505 * 109.47402 * 179.97438 * 19 17 14 21 21 C 1.36932 * 120.00162 * 180.02562 * 20 19 17 22 22 H 1.08007 * 120.00168 * 359.97438 * 21 20 19 23 23 C 1.38813 * 120.00118 * 180.02562 * 21 20 19 24 24 N 1.31615 * 119.99761 * 359.97438 * 23 21 20 25 25 Si 1.86796 * 120.00119 * 179.97438 * 23 21 20 26 26 H 1.48503 * 109.47632 * 59.99431 * 25 23 21 27 27 H 1.48494 * 109.47227 * 179.97438 * 25 23 21 28 28 H 1.48505 * 109.46911 * 299.99639 * 25 23 21 29 29 C 1.47024 * 125.64973 * 4.67757 * 12 10 9 30 30 H 1.08997 * 109.47277 * 60.00810 * 1 2 3 31 31 H 1.09002 * 109.47055 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47525 * 300.00227 * 1 2 3 33 33 H 1.08994 * 109.46988 * 59.99307 * 3 2 1 34 34 H 1.09005 * 109.46568 * 299.99697 * 3 2 1 35 35 H 1.09001 * 109.46699 * 269.99366 * 7 6 5 36 36 H 1.09000 * 109.46730 * 29.99200 * 7 6 5 37 37 H 1.08991 * 109.47203 * 149.99635 * 7 6 5 38 38 H 1.08005 * 126.28851 * 179.74165 * 8 6 5 39 39 H 1.09007 * 110.36409 * 274.74651 * 13 12 10 40 40 H 1.08998 * 110.36840 * 37.06388 * 13 12 10 41 41 H 1.09001 * 109.47200 * 307.97359 * 16 14 13 42 42 H 1.08999 * 109.47321 * 67.97628 * 16 14 13 43 43 H 1.09004 * 109.47235 * 187.98184 * 16 14 13 44 44 H 1.09007 * 109.47090 * 299.97924 * 19 17 14 45 45 H 1.08997 * 109.47415 * 59.97399 * 19 17 14 46 46 H 0.97000 * 119.99497 * 359.97438 * 20 19 17 47 47 H 0.97003 * 119.99967 * 180.02562 * 24 23 21 48 48 H 1.09007 * 109.88396 * 300.44095 * 29 12 10 49 49 H 1.08999 * 109.88266 * 61.45042 * 29 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5124 1.1865 0.0006 5 7 4.2771 1.1262 -1.0546 6 7 5.6103 1.0211 -0.6427 7 6 6.7748 0.9299 -1.5271 8 6 5.6425 1.0191 0.6995 9 6 4.3397 1.1216 1.1442 10 6 3.8948 1.1565 2.5493 11 8 2.7238 1.3533 2.8116 12 7 4.7859 0.9703 3.5431 13 6 4.4660 0.8897 4.9800 14 6 5.6357 0.0807 5.5995 15 1 5.4974 -0.9902 5.4507 16 6 5.7996 0.4083 7.0850 17 6 6.8431 0.6049 4.7779 18 1 7.2125 1.5452 5.1872 19 6 7.9605 -0.4392 4.7316 20 7 9.0845 0.0827 3.9501 21 6 10.2065 -0.6813 3.7701 22 1 10.2631 -1.6685 4.2045 23 6 11.2717 -0.1865 3.0301 24 7 11.2029 1.0167 2.5011 25 14 12.8026 -1.2285 2.7851 26 1 12.4376 -2.4890 2.0899 27 1 13.7860 -0.4778 1.9639 28 1 13.4010 -1.5473 4.1063 29 6 6.2387 0.8203 3.3744 30 1 -0.3634 0.5137 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5139 0.8899 33 1 1.6885 1.8464 0.8899 34 1 1.6885 1.8463 -0.8901 35 1 6.9829 -0.1173 -1.7468 36 1 6.5682 1.4619 -2.4558 37 1 7.6393 1.3770 -1.0367 38 1 6.5251 0.9457 1.3176 39 1 4.4199 1.8881 5.4149 40 1 3.5219 0.3659 5.1297 41 1 5.8672 1.4886 7.2136 42 1 4.9397 0.0297 7.6376 43 1 6.7088 -0.0600 7.4622 44 1 8.2942 -0.6595 5.7457 45 1 7.5867 -1.3511 4.2660 46 1 9.0335 0.9692 3.5597 47 1 11.9471 1.3623 1.9837 48 1 6.4515 -0.0422 2.7427 49 1 6.6545 1.7214 2.9235 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001279112100.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:18:17 Heat of formation + Delta-G solvation = -3.961405 kcal Electronic energy + Delta-G solvation = -30023.416649 eV Core-core repulsion = 25987.198320 eV Total energy + Delta-G solvation = -4036.218330 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 2.64 seconds Orbital eigenvalues (eV) -42.64979 -40.88612 -39.02756 -38.66014 -36.35358 -34.64814 -34.36709 -33.22158 -31.58079 -30.54996 -29.94722 -27.89610 -27.15220 -27.09047 -25.93714 -24.99040 -23.41501 -22.00291 -21.75993 -21.12112 -20.36186 -19.07619 -18.11541 -17.56701 -17.46732 -17.16287 -16.73797 -16.60130 -16.52662 -16.26971 -16.01230 -15.51728 -15.39279 -15.21685 -14.94343 -14.56814 -14.11955 -14.01739 -13.79451 -13.58115 -13.45049 -13.34136 -13.25803 -13.17932 -13.06758 -12.86709 -12.69843 -12.45876 -12.36482 -12.16027 -12.12691 -11.88281 -11.73378 -11.53322 -11.31563 -11.09174 -10.87349 -10.62849 -10.57043 -9.92578 -9.58446 -8.92990 -7.89790 -5.16785 0.40349 0.80013 1.28527 1.52389 1.53025 1.58733 1.98534 2.26232 2.59933 2.95469 3.29369 3.42382 3.45164 3.52705 3.65416 3.77921 3.95122 4.00195 4.16084 4.20244 4.27477 4.30067 4.35798 4.37779 4.45024 4.53185 4.53897 4.55919 4.57319 4.65057 4.72434 4.77013 4.80563 4.83484 4.84436 4.90972 5.06727 5.18048 5.20305 5.26548 5.31605 5.37924 5.54407 5.58369 5.73234 6.14004 6.32654 6.35690 6.48226 7.14251 7.40955 8.14512 8.39768 9.32669 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.010616 B = 0.003567 C = 0.002800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2636.885799 B = 7848.354607 C = 9999.321087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.411 6.411 3 C 0.146 3.854 4 C 0.112 3.888 5 N -0.301 5.301 6 N -0.352 5.352 7 C 0.085 3.915 8 C 0.103 3.897 9 C -0.300 4.300 10 C 0.608 3.392 11 O -0.574 6.574 12 N -0.614 5.614 13 C 0.114 3.886 14 C -0.087 4.087 15 H 0.087 0.913 16 C -0.135 4.135 17 C -0.091 4.091 18 H 0.089 0.911 19 C 0.166 3.834 20 N -0.741 5.741 21 C -0.241 4.241 22 H 0.072 0.928 23 C -0.065 4.065 24 N -0.962 5.962 25 Si 0.962 3.038 26 H -0.281 1.281 27 H -0.297 1.297 28 H -0.283 1.283 29 C 0.105 3.895 30 H 0.059 0.941 31 H 0.098 0.902 32 H 0.047 0.953 33 H 0.082 0.918 34 H 0.079 0.921 35 H 0.093 0.907 36 H 0.109 0.891 37 H 0.110 0.890 38 H 0.208 0.792 39 H 0.078 0.922 40 H 0.076 0.924 41 H 0.062 0.938 42 H 0.073 0.927 43 H 0.061 0.939 44 H 0.029 0.971 45 H 0.021 0.979 46 H 0.377 0.623 47 H 0.251 0.749 48 H 0.069 0.931 49 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.727 1.046 -1.240 15.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.329 6.329 3 C 0.068 3.932 4 C -0.056 4.056 5 N -0.124 5.124 6 N -0.130 5.130 7 C -0.054 4.054 8 C -0.049 4.049 9 C -0.315 4.315 10 C 0.399 3.601 11 O -0.455 6.455 12 N -0.346 5.346 13 C -0.008 4.008 14 C -0.106 4.106 15 H 0.105 0.895 16 C -0.193 4.193 17 C -0.110 4.110 18 H 0.108 0.892 19 C 0.039 3.961 20 N -0.384 5.384 21 C -0.373 4.373 22 H 0.090 0.910 23 C -0.258 4.258 24 N -0.613 5.613 25 Si 0.792 3.208 26 H -0.207 1.207 27 H -0.223 1.223 28 H -0.210 1.210 29 C -0.017 4.017 30 H 0.078 0.922 31 H 0.117 0.883 32 H 0.066 0.934 33 H 0.100 0.900 34 H 0.097 0.903 35 H 0.111 0.889 36 H 0.127 0.873 37 H 0.128 0.872 38 H 0.225 0.775 39 H 0.096 0.904 40 H 0.094 0.906 41 H 0.082 0.918 42 H 0.092 0.908 43 H 0.080 0.920 44 H 0.047 0.953 45 H 0.039 0.961 46 H 0.209 0.791 47 H 0.059 0.941 48 H 0.087 0.913 49 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -16.015 0.819 -2.543 16.236 hybrid contribution 1.115 0.024 0.328 1.162 sum -14.900 0.843 -2.215 15.088 Atomic orbital electron populations 1.22939 0.78620 1.03993 1.01112 1.87860 1.22127 1.27265 1.95672 1.20684 0.84222 0.85729 1.02569 1.22206 0.96435 0.97697 0.89219 1.77037 0.87512 1.24961 1.22918 1.48717 1.06429 1.52400 1.05431 1.22429 0.82836 1.05326 0.94789 1.24198 0.99627 0.95444 0.85638 1.20200 0.92969 1.24199 0.94091 1.16940 0.84143 0.75583 0.83407 1.90668 1.17920 1.52525 1.84425 1.48311 1.07565 1.71480 1.07250 1.22453 0.98829 1.00765 0.78736 1.22371 0.92041 1.00043 0.96190 0.89493 1.21671 1.02709 1.02288 0.92584 1.22376 0.94820 1.00038 0.93755 0.89227 1.20746 0.86502 0.94331 0.94525 1.42488 1.14923 1.18426 1.62537 1.19508 0.93960 0.98115 1.25730 0.91049 1.25350 1.01057 0.97930 1.01472 1.69754 1.32769 1.17927 1.40809 0.85392 0.80012 0.78002 0.77404 1.20706 1.22343 1.20969 1.22355 0.79059 1.01289 0.99005 0.92231 0.88333 0.93411 0.90007 0.90293 0.88883 0.87273 0.87154 0.77534 0.90431 0.90591 0.91846 0.90820 0.91954 0.95292 0.96084 0.79055 0.94055 0.91288 0.90913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.58 11.01 113.37 1.25 1.82 16 2 O -0.41 -12.18 10.69 -148.98 -1.59 -13.77 16 3 C 0.15 4.16 6.03 71.23 0.43 4.59 16 4 C 0.11 3.62 6.89 43.51 0.30 3.92 16 5 N -0.30 -9.45 12.50 -46.68 -0.58 -10.04 16 6 N -0.35 -9.72 3.98 -367.77 -1.46 -11.18 16 7 C 0.09 1.63 11.44 127.77 1.46 3.09 16 8 C 0.10 2.99 9.97 84.27 0.84 3.83 16 9 C -0.30 -9.74 6.09 -20.15 -0.12 -9.86 16 10 C 0.61 20.38 7.84 86.66 0.68 21.06 16 11 O -0.57 -21.45 15.18 -4.05 -0.06 -21.51 16 12 N -0.61 -17.74 3.32 -815.22 -2.71 -20.45 16 13 C 0.11 2.76 6.36 86.93 0.55 3.31 16 14 C -0.09 -1.92 3.10 -9.32 -0.03 -1.95 16 15 H 0.09 1.95 8.05 -2.39 -0.02 1.93 16 16 C -0.14 -2.41 9.31 71.98 0.67 -1.74 16 17 C -0.09 -2.46 2.48 -9.61 -0.02 -2.48 16 18 H 0.09 2.46 8.04 -2.38 -0.02 2.44 16 19 C 0.17 5.69 5.58 86.38 0.48 6.17 16 20 N -0.74 -32.98 5.45 -343.44 -1.87 -34.85 16 21 C -0.24 -12.30 9.99 84.03 0.84 -11.46 16 22 H 0.07 3.55 7.83 -2.91 -0.02 3.53 16 23 C -0.07 -3.45 5.50 84.86 0.47 -2.98 16 24 N -0.96 -53.57 13.06 21.65 0.28 -53.29 16 25 Si 0.96 43.22 29.55 68.60 2.03 45.25 16 26 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 27 H -0.30 -13.53 7.11 99.48 0.71 -12.83 16 28 H -0.28 -12.48 7.11 99.48 0.71 -11.78 16 29 C 0.11 2.95 4.28 86.73 0.37 3.33 16 30 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 32 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 33 H 0.08 2.42 6.45 -2.39 -0.02 2.40 16 34 H 0.08 1.87 8.14 -2.38 -0.02 1.85 16 35 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 36 H 0.11 1.72 8.14 -2.39 -0.02 1.70 16 37 H 0.11 1.91 8.14 -2.39 -0.02 1.89 16 38 H 0.21 5.59 4.46 -2.91 -0.01 5.58 16 39 H 0.08 1.74 7.99 -2.38 -0.02 1.72 16 40 H 0.08 1.87 8.08 -2.39 -0.02 1.85 16 41 H 0.06 1.08 8.07 -2.39 -0.02 1.06 16 42 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 43 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 44 H 0.03 1.00 8.14 -2.38 -0.02 0.98 16 45 H 0.02 0.75 8.06 -2.39 -0.02 0.73 16 46 H 0.38 17.55 7.52 -92.71 -0.70 16.86 16 47 H 0.25 13.71 8.31 -92.71 -0.77 12.94 16 48 H 0.07 2.07 6.38 -2.38 -0.02 2.06 16 49 H 0.07 2.03 7.10 -2.39 -0.02 2.01 16 Total: -1.00 -69.06 398.70 2.45 -66.60 By element: Atomic # 1 Polarization: 32.31 SS G_CDS: 0.26 Total: 32.57 kcal Atomic # 6 Polarization: 12.50 SS G_CDS: 8.17 Total: 20.67 kcal Atomic # 7 Polarization: -123.47 SS G_CDS: -6.35 Total: -129.81 kcal Atomic # 8 Polarization: -33.62 SS G_CDS: -1.65 Total: -35.28 kcal Atomic # 14 Polarization: 43.22 SS G_CDS: 2.03 Total: 45.25 kcal Total: -69.06 2.45 -66.60 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001279112100.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.642 kcal (2) G-P(sol) polarization free energy of solvation -69.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.603 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.64 seconds