Wall clock time and date at job start Tue Mar 31 2020 20:06:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08999 * 109.47672 * 2 1 4 4 C 1.53004 * 109.47089 * 119.99411 * 2 1 3 5 5 N 1.46498 * 109.47250 * 174.99921 * 4 2 1 6 6 C 1.46497 * 120.00013 * 269.99797 * 5 4 2 7 7 C 1.34773 * 119.99881 * 90.00134 * 5 4 2 8 8 O 1.21282 * 119.99958 * 356.55447 * 7 5 4 9 9 C 1.50704 * 119.99981 * 176.82286 * 7 5 4 10 10 H 1.09001 * 109.46699 * 318.09221 * 9 7 5 11 11 C 1.52998 * 109.46821 * 78.08963 * 9 7 5 12 12 C 1.52996 * 109.47310 * 198.09362 * 9 7 5 13 13 C 1.52996 * 109.47371 * 175.00197 * 12 9 7 14 14 C 1.50693 * 109.47382 * 179.97438 * 13 12 9 15 15 C 1.38245 * 119.97507 * 269.72303 * 14 13 12 16 16 C 1.38202 * 120.02469 * 179.72018 * 15 14 13 17 17 C 1.38453 * 119.97447 * 0.58234 * 16 15 14 18 18 F 1.35108 * 120.02698 * 179.67993 * 17 16 15 19 19 C 1.38461 * 119.94891 * 359.69216 * 17 16 15 20 20 C 1.38193 * 119.97400 * 0.02562 * 19 17 16 21 21 N 1.46502 * 109.47310 * 239.99369 * 2 1 3 22 22 C 1.36935 * 119.99625 * 85.00503 * 21 2 1 23 23 H 1.07995 * 120.00536 * 359.97438 * 22 21 2 24 24 C 1.38819 * 119.99721 * 180.02562 * 22 21 2 25 25 N 1.31617 * 119.99934 * 359.97438 * 24 22 21 26 26 Si 1.86794 * 120.00076 * 179.97438 * 24 22 21 27 27 H 1.48505 * 109.47038 * 59.99709 * 26 24 22 28 28 H 1.48495 * 109.47484 * 179.97438 * 26 24 22 29 29 H 1.48502 * 109.47362 * 300.00342 * 26 24 22 30 30 H 1.08999 * 109.47672 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47189 * 300.00704 * 1 2 3 32 32 H 1.09007 * 109.46991 * 60.00184 * 1 2 3 33 33 H 1.09003 * 109.46543 * 54.99831 * 4 2 1 34 34 H 1.09003 * 109.47026 * 295.00496 * 4 2 1 35 35 H 1.08997 * 109.47437 * 266.45025 * 6 5 4 36 36 H 1.09000 * 109.47014 * 26.45215 * 6 5 4 37 37 H 1.09006 * 109.47187 * 146.44733 * 6 5 4 38 38 H 1.09008 * 109.46601 * 69.27359 * 11 9 7 39 39 H 1.09005 * 109.47390 * 189.26649 * 11 9 7 40 40 H 1.08996 * 109.47616 * 309.27709 * 11 9 7 41 41 H 1.08999 * 109.47296 * 295.00109 * 12 9 7 42 42 H 1.09003 * 109.47117 * 54.99921 * 12 9 7 43 43 H 1.08999 * 109.46839 * 300.00192 * 13 12 9 44 44 H 1.09003 * 109.47225 * 59.99791 * 13 12 9 45 45 H 1.08000 * 119.98576 * 359.97438 * 15 14 13 46 46 H 1.08000 * 120.01180 * 180.25508 * 16 15 14 47 47 H 1.07996 * 120.01162 * 179.97438 * 19 17 16 48 48 H 1.08001 * 119.98906 * 179.97438 * 20 19 17 49 49 H 0.96998 * 120.00123 * 265.00447 * 21 2 1 50 50 H 0.96995 * 120.00391 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7211 1.2493 5 7 3.5000 -0.8263 1.1907 6 6 4.1257 -1.9920 0.5615 7 6 4.2675 0.1493 1.7157 8 8 3.7509 1.1432 2.1805 9 6 5.7678 0.0078 1.7196 10 1 6.0357 -1.0133 1.9913 11 6 6.3135 0.3245 0.3258 12 6 6.3692 0.9804 2.7360 13 6 7.8788 0.7506 2.8305 14 6 8.4713 1.7090 3.8311 15 6 8.9247 2.9475 3.4166 16 6 9.4629 3.8295 4.3344 17 6 9.5589 3.4678 5.6674 18 9 10.0908 4.3268 6.5644 19 6 9.1097 2.2249 6.0804 20 6 8.5665 1.3468 5.1619 21 7 2.0183 -0.6907 -1.1961 22 6 2.1492 -0.0077 -2.3757 23 1 1.8920 1.0401 -2.4244 24 6 2.6115 -0.6623 -3.5092 25 7 2.9244 -1.9393 -3.4500 26 14 2.7893 0.2693 -5.1185 27 1 3.7447 1.3917 -4.9377 28 1 3.2984 -0.6491 -6.1684 29 1 1.4669 0.8062 -5.5285 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8901 33 1 1.6052 -1.7197 1.2953 34 1 1.7515 -0.1581 2.1370 35 1 4.3397 -2.7438 1.3211 36 1 3.4484 -2.4102 -0.1831 37 1 5.0547 -1.6891 0.0783 38 1 6.1915 1.3882 0.1210 39 1 7.3714 0.0652 0.2821 40 1 5.7665 -0.2538 -0.4187 41 1 6.1770 2.0047 2.4165 42 1 5.9143 0.8130 3.7123 43 1 8.0710 -0.2737 3.1500 44 1 8.3337 0.9180 1.8542 45 1 8.8545 3.2274 2.3759 46 1 9.8133 4.7986 4.0110 47 1 9.1845 1.9416 7.1199 48 1 8.2164 0.3772 5.4838 49 1 2.2490 -1.6319 -1.1525 50 1 3.2471 -2.3969 -4.2420 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001283621306.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:06:56 Heat of formation + Delta-G solvation = -58.503685 kcal Electronic energy + Delta-G solvation = -29087.400018 eV Core-core repulsion = 25028.896595 eV Total energy + Delta-G solvation = -4058.503422 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -49.11884 -39.96942 -39.34803 -36.53552 -35.39762 -34.20113 -32.36174 -31.70834 -31.40377 -28.88046 -28.14513 -26.72370 -25.98629 -24.75537 -23.62888 -23.32355 -22.15814 -20.91787 -19.99302 -18.54534 -17.91367 -17.29860 -16.80101 -16.61190 -16.06957 -15.81196 -15.42773 -15.26493 -14.70771 -14.59561 -14.34885 -13.89442 -13.82190 -13.64606 -13.61543 -13.37289 -13.06891 -12.88054 -12.42922 -12.29726 -12.16518 -12.09706 -11.90670 -11.71705 -11.58720 -11.44433 -11.33865 -11.24238 -11.16233 -10.85522 -10.77620 -10.67320 -10.64888 -10.35517 -10.08086 -9.64197 -9.38210 -9.27453 -8.92239 -8.75519 -8.10426 -6.95197 -5.79013 -3.05282 0.87512 0.95985 3.03067 3.28364 3.42110 3.46922 3.47644 3.49500 4.01108 4.42551 4.47147 4.58596 4.62060 4.71587 4.85930 5.00057 5.02561 5.12626 5.32598 5.36647 5.45038 5.52031 5.53939 5.58765 5.61971 5.63186 5.66905 5.80967 5.84901 5.85822 5.89250 5.94042 5.95520 5.97503 6.02576 6.15465 6.26084 6.28982 6.29710 6.35231 6.37845 6.53096 6.63579 6.70872 6.85000 6.90137 7.18802 7.70236 7.84613 8.41082 8.60449 9.52011 10.08488 10.44599 11.43944 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.015794 B = 0.002327 C = 0.002191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1772.359602 B =12029.364371 C =12775.275914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.155 3.845 3 H 0.051 0.949 4 C 0.110 3.890 5 N -0.595 5.595 6 C 0.076 3.924 7 C 0.519 3.481 8 O -0.551 6.551 9 C -0.107 4.107 10 H 0.089 0.911 11 C -0.149 4.149 12 C -0.092 4.092 13 C -0.083 4.083 14 C -0.084 4.084 15 C -0.087 4.087 16 C -0.151 4.151 17 C 0.087 3.913 18 F -0.144 7.144 19 C -0.152 4.152 20 C -0.089 4.089 21 N -0.719 5.719 22 C -0.229 4.229 23 H 0.067 0.933 24 C -0.014 4.014 25 N -0.937 5.937 26 Si 0.903 3.097 27 H -0.287 1.287 28 H -0.292 1.292 29 H -0.288 1.288 30 H 0.046 0.954 31 H 0.037 0.963 32 H 0.055 0.945 33 H 0.070 0.930 34 H 0.077 0.923 35 H 0.043 0.957 36 H 0.089 0.911 37 H 0.075 0.925 38 H 0.061 0.939 39 H 0.063 0.937 40 H 0.076 0.924 41 H 0.074 0.926 42 H 0.066 0.934 43 H 0.075 0.925 44 H 0.079 0.921 45 H 0.134 0.866 46 H 0.134 0.866 47 H 0.133 0.867 48 H 0.132 0.868 49 H 0.381 0.619 50 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.392 2.372 16.622 20.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.044 3.956 3 H 0.070 0.930 4 C -0.013 4.013 5 N -0.325 5.325 6 C -0.067 4.067 7 C 0.306 3.694 8 O -0.430 6.430 9 C -0.128 4.128 10 H 0.108 0.892 11 C -0.206 4.206 12 C -0.130 4.130 13 C -0.120 4.120 14 C -0.084 4.084 15 C -0.105 4.105 16 C -0.170 4.170 17 C 0.068 3.932 18 F -0.122 7.122 19 C -0.171 4.171 20 C -0.107 4.107 21 N -0.362 5.362 22 C -0.360 4.360 23 H 0.085 0.915 24 C -0.209 4.209 25 N -0.586 5.586 26 Si 0.735 3.265 27 H -0.214 1.214 28 H -0.218 1.218 29 H -0.214 1.214 30 H 0.065 0.935 31 H 0.056 0.944 32 H 0.074 0.926 33 H 0.089 0.911 34 H 0.096 0.904 35 H 0.061 0.939 36 H 0.108 0.892 37 H 0.093 0.907 38 H 0.080 0.920 39 H 0.082 0.918 40 H 0.095 0.905 41 H 0.093 0.907 42 H 0.085 0.915 43 H 0.093 0.907 44 H 0.098 0.902 45 H 0.152 0.848 46 H 0.152 0.848 47 H 0.151 0.849 48 H 0.150 0.850 49 H 0.216 0.784 50 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 12.147 3.024 16.751 20.912 hybrid contribution 0.174 0.267 -0.920 0.974 sum 12.322 3.291 15.831 20.329 Atomic orbital electron populations 1.22374 0.98934 1.00767 1.00227 1.20650 0.91853 0.96343 0.86769 0.93048 1.21821 0.79233 1.00945 0.99333 1.47600 1.06539 1.21475 1.56925 1.22002 1.00296 0.87097 0.97276 1.20497 0.89101 0.82460 0.77295 1.90645 1.75217 1.29246 1.47862 1.21277 0.92216 1.01261 0.98055 0.89244 1.21893 1.00965 1.03096 0.94666 1.21385 0.92794 1.00049 0.98787 1.20716 0.95685 0.97770 0.97852 1.20026 0.98257 0.95480 0.94674 1.20989 0.96875 0.92805 0.99853 1.21158 1.02831 1.01383 0.91620 1.17735 0.99517 0.88832 0.87117 1.91492 1.84063 1.69392 1.67284 1.21135 1.01768 0.93103 1.01089 1.20949 0.97947 0.99570 0.92228 1.42446 1.78174 1.10370 1.05235 1.19183 1.35759 0.93757 0.87303 0.91537 1.24644 1.02537 0.95967 0.97779 1.69611 1.51575 1.08513 1.28883 0.86322 0.77775 0.78618 0.83820 1.21431 1.21777 1.21437 0.93523 0.94361 0.92623 0.91147 0.90417 0.93876 0.89243 0.90677 0.91973 0.91766 0.90526 0.90727 0.91543 0.90684 0.90218 0.84835 0.84824 0.84888 0.84985 0.78400 0.93603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.96 9.49 37.15 0.35 -2.61 16 2 C 0.15 3.12 3.20 -67.93 -0.22 2.91 16 3 H 0.05 1.17 8.08 -51.93 -0.42 0.75 16 4 C 0.11 1.88 5.01 -4.04 -0.02 1.86 16 5 N -0.59 -9.81 2.73 -181.57 -0.50 -10.31 16 6 C 0.08 1.14 9.32 59.85 0.56 1.69 16 7 C 0.52 8.66 6.85 -10.99 -0.08 8.59 16 8 O -0.55 -10.97 15.73 5.56 0.09 -10.88 16 9 C -0.11 -1.33 1.90 -91.77 -0.17 -1.51 16 10 H 0.09 0.94 7.49 -51.93 -0.39 0.55 16 11 C -0.15 -1.91 8.34 37.16 0.31 -1.60 16 12 C -0.09 -1.04 4.02 -26.74 -0.11 -1.15 16 13 C -0.08 -0.71 5.11 -27.89 -0.14 -0.85 16 14 C -0.08 -0.76 5.13 -104.62 -0.54 -1.30 16 15 C -0.09 -0.78 9.70 -39.59 -0.38 -1.17 16 16 C -0.15 -1.39 10.03 -39.52 -0.40 -1.78 16 17 C 0.09 0.87 7.30 -39.42 -0.29 0.58 16 18 F -0.14 -1.54 17.27 2.25 0.04 -1.50 16 19 C -0.15 -1.35 10.03 -39.52 -0.40 -1.75 16 20 C -0.09 -0.76 9.70 -39.59 -0.38 -1.14 16 21 N -0.72 -17.04 4.57 -53.43 -0.24 -17.28 16 22 C -0.23 -6.15 9.93 -15.06 -0.15 -6.30 16 23 H 0.07 1.81 7.83 -52.49 -0.41 1.40 16 24 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 25 N -0.94 -26.57 13.06 55.49 0.72 -25.84 16 26 Si 0.90 22.01 29.55 -169.99 -5.02 16.99 16 27 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 28 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 29 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 30 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 33 H 0.07 1.09 8.07 -51.93 -0.42 0.67 16 34 H 0.08 1.30 7.47 -51.93 -0.39 0.91 16 35 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.09 1.56 5.71 -51.93 -0.30 1.27 16 37 H 0.07 1.09 4.74 -51.93 -0.25 0.85 16 38 H 0.06 0.86 8.11 -51.92 -0.42 0.44 16 39 H 0.06 0.64 7.04 -51.93 -0.37 0.28 16 40 H 0.08 1.18 5.97 -51.93 -0.31 0.87 16 41 H 0.07 0.97 8.05 -51.93 -0.42 0.55 16 42 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 43 H 0.07 0.54 8.09 -51.93 -0.42 0.12 16 44 H 0.08 0.63 6.72 -51.93 -0.35 0.28 16 45 H 0.13 1.01 8.06 -52.49 -0.42 0.58 16 46 H 0.13 1.01 8.06 -52.49 -0.42 0.58 16 47 H 0.13 0.94 8.06 -52.49 -0.42 0.52 16 48 H 0.13 0.88 8.06 -52.49 -0.42 0.46 16 49 H 0.38 9.22 5.38 -40.82 -0.22 9.00 16 50 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 LS Contribution 404.76 15.07 6.10 6.10 Total: -1.00 -31.16 404.76 -8.97 -40.13 By element: Atomic # 1 Polarization: 16.60 SS G_CDS: -8.01 Total: 8.59 kcal Atomic # 6 Polarization: -3.85 SS G_CDS: -2.15 Total: -6.00 kcal Atomic # 7 Polarization: -53.42 SS G_CDS: -0.01 Total: -53.43 kcal Atomic # 8 Polarization: -10.97 SS G_CDS: 0.09 Total: -10.88 kcal Atomic # 9 Polarization: -1.54 SS G_CDS: 0.04 Total: -1.50 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -31.16 -8.97 -40.13 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001283621306.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.371 kcal (2) G-P(sol) polarization free energy of solvation -31.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.133 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds