Wall clock time and date at job start Tue Mar 31 2020 20:06:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08999 * 109.47672 * 2 1 4 4 C 1.53004 * 109.47089 * 119.99411 * 2 1 3 5 5 N 1.46498 * 109.47250 * 174.99921 * 4 2 1 6 6 C 1.46497 * 120.00013 * 269.99797 * 5 4 2 7 7 C 1.34773 * 119.99881 * 90.00134 * 5 4 2 8 8 O 1.21282 * 119.99958 * 356.55447 * 7 5 4 9 9 C 1.50704 * 119.99981 * 176.82286 * 7 5 4 10 10 H 1.09001 * 109.46699 * 318.09221 * 9 7 5 11 11 C 1.52998 * 109.46821 * 78.08963 * 9 7 5 12 12 C 1.52996 * 109.47310 * 198.09362 * 9 7 5 13 13 C 1.52996 * 109.47371 * 175.00197 * 12 9 7 14 14 C 1.50693 * 109.47382 * 179.97438 * 13 12 9 15 15 C 1.38245 * 119.97507 * 269.72303 * 14 13 12 16 16 C 1.38202 * 120.02469 * 179.72018 * 15 14 13 17 17 C 1.38453 * 119.97447 * 0.58234 * 16 15 14 18 18 F 1.35108 * 120.02698 * 179.67993 * 17 16 15 19 19 C 1.38461 * 119.94891 * 359.69216 * 17 16 15 20 20 C 1.38193 * 119.97400 * 0.02562 * 19 17 16 21 21 N 1.46502 * 109.47310 * 239.99369 * 2 1 3 22 22 C 1.36935 * 119.99625 * 85.00503 * 21 2 1 23 23 H 1.07995 * 120.00536 * 359.97438 * 22 21 2 24 24 C 1.38819 * 119.99721 * 180.02562 * 22 21 2 25 25 N 1.31617 * 119.99934 * 359.97438 * 24 22 21 26 26 Si 1.86794 * 120.00076 * 179.97438 * 24 22 21 27 27 H 1.48505 * 109.47038 * 59.99709 * 26 24 22 28 28 H 1.48495 * 109.47484 * 179.97438 * 26 24 22 29 29 H 1.48502 * 109.47362 * 300.00342 * 26 24 22 30 30 H 1.08999 * 109.47672 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47189 * 300.00704 * 1 2 3 32 32 H 1.09007 * 109.46991 * 60.00184 * 1 2 3 33 33 H 1.09003 * 109.46543 * 54.99831 * 4 2 1 34 34 H 1.09003 * 109.47026 * 295.00496 * 4 2 1 35 35 H 1.08997 * 109.47437 * 266.45025 * 6 5 4 36 36 H 1.09000 * 109.47014 * 26.45215 * 6 5 4 37 37 H 1.09006 * 109.47187 * 146.44733 * 6 5 4 38 38 H 1.09008 * 109.46601 * 69.27359 * 11 9 7 39 39 H 1.09005 * 109.47390 * 189.26649 * 11 9 7 40 40 H 1.08996 * 109.47616 * 309.27709 * 11 9 7 41 41 H 1.08999 * 109.47296 * 295.00109 * 12 9 7 42 42 H 1.09003 * 109.47117 * 54.99921 * 12 9 7 43 43 H 1.08999 * 109.46839 * 300.00192 * 13 12 9 44 44 H 1.09003 * 109.47225 * 59.99791 * 13 12 9 45 45 H 1.08000 * 119.98576 * 359.97438 * 15 14 13 46 46 H 1.08000 * 120.01180 * 180.25508 * 16 15 14 47 47 H 1.07996 * 120.01162 * 179.97438 * 19 17 16 48 48 H 1.08001 * 119.98906 * 179.97438 * 20 19 17 49 49 H 0.96998 * 120.00123 * 265.00447 * 21 2 1 50 50 H 0.96995 * 120.00391 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7211 1.2493 5 7 3.5000 -0.8263 1.1907 6 6 4.1257 -1.9920 0.5615 7 6 4.2675 0.1493 1.7157 8 8 3.7509 1.1432 2.1805 9 6 5.7678 0.0078 1.7196 10 1 6.0357 -1.0133 1.9913 11 6 6.3135 0.3245 0.3258 12 6 6.3692 0.9804 2.7360 13 6 7.8788 0.7506 2.8305 14 6 8.4713 1.7090 3.8311 15 6 8.9247 2.9475 3.4166 16 6 9.4629 3.8295 4.3344 17 6 9.5589 3.4678 5.6674 18 9 10.0908 4.3268 6.5644 19 6 9.1097 2.2249 6.0804 20 6 8.5665 1.3468 5.1619 21 7 2.0183 -0.6907 -1.1961 22 6 2.1492 -0.0077 -2.3757 23 1 1.8920 1.0401 -2.4244 24 6 2.6115 -0.6623 -3.5092 25 7 2.9244 -1.9393 -3.4500 26 14 2.7893 0.2693 -5.1185 27 1 3.7447 1.3917 -4.9377 28 1 3.2984 -0.6491 -6.1684 29 1 1.4669 0.8062 -5.5285 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8901 33 1 1.6052 -1.7197 1.2953 34 1 1.7515 -0.1581 2.1370 35 1 4.3397 -2.7438 1.3211 36 1 3.4484 -2.4102 -0.1831 37 1 5.0547 -1.6891 0.0783 38 1 6.1915 1.3882 0.1210 39 1 7.3714 0.0652 0.2821 40 1 5.7665 -0.2538 -0.4187 41 1 6.1770 2.0047 2.4165 42 1 5.9143 0.8130 3.7123 43 1 8.0710 -0.2737 3.1500 44 1 8.3337 0.9180 1.8542 45 1 8.8545 3.2274 2.3759 46 1 9.8133 4.7986 4.0110 47 1 9.1845 1.9416 7.1199 48 1 8.2164 0.3772 5.4838 49 1 2.2490 -1.6319 -1.1525 50 1 3.2471 -2.3969 -4.2420 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001283621306.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:06:55 Heat of formation + Delta-G solvation = -74.135434 kcal Electronic energy + Delta-G solvation = -29088.077861 eV Core-core repulsion = 25028.896595 eV Total energy + Delta-G solvation = -4059.181266 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -49.88695 -41.17950 -40.10280 -38.02683 -36.46652 -35.75750 -33.98007 -32.82124 -32.05324 -30.67855 -29.05792 -28.01728 -27.26614 -25.93293 -25.37012 -23.97979 -23.15275 -21.92688 -21.38359 -19.81009 -19.24819 -18.63063 -18.01172 -17.36547 -17.20424 -16.76808 -16.58777 -16.34694 -16.30669 -15.72628 -15.55613 -15.29544 -14.99396 -14.65277 -14.55871 -14.38547 -14.14168 -13.82569 -13.77186 -13.69747 -13.50397 -13.30187 -13.11622 -13.05054 -12.78732 -12.73785 -12.55595 -12.45704 -12.41759 -12.32066 -12.20557 -11.95280 -11.83718 -11.69209 -11.60008 -11.48710 -10.96801 -10.54968 -10.03762 -9.48436 -9.47326 -8.91871 -7.90214 -5.15185 0.17398 0.30615 1.47454 1.47825 1.54044 1.73166 2.21634 2.57921 2.63890 3.32294 3.42932 3.60053 3.71261 3.79578 3.90276 3.98067 4.01379 4.13815 4.18798 4.32151 4.33425 4.38402 4.45441 4.52452 4.57357 4.61936 4.64739 4.72367 4.75499 4.80593 4.91130 4.94229 4.97300 4.99725 5.02969 5.12649 5.14291 5.19161 5.21555 5.26521 5.31001 5.39763 5.42599 5.47863 5.54011 5.66696 5.74035 5.97455 6.32615 6.56698 7.30288 7.40514 8.13146 8.42780 9.31931 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.015794 B = 0.002327 C = 0.002191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1772.359602 B =12029.364371 C =12775.275914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.153 3.847 3 H 0.019 0.981 4 C 0.115 3.885 5 N -0.599 5.599 6 C 0.079 3.921 7 C 0.508 3.492 8 O -0.591 6.591 9 C -0.098 4.098 10 H 0.120 0.880 11 C -0.143 4.143 12 C -0.083 4.083 13 C -0.074 4.074 14 C -0.092 4.092 15 C -0.096 4.096 16 C -0.160 4.160 17 C 0.066 3.934 18 F -0.153 7.153 19 C -0.157 4.157 20 C -0.091 4.091 21 N -0.722 5.722 22 C -0.233 4.233 23 H 0.056 0.944 24 C -0.061 4.061 25 N -0.957 5.957 26 Si 0.957 3.043 27 H -0.285 1.285 28 H -0.292 1.292 29 H -0.287 1.287 30 H 0.055 0.945 31 H 0.065 0.935 32 H 0.034 0.966 33 H 0.091 0.909 34 H 0.082 0.918 35 H 0.081 0.919 36 H 0.062 0.938 37 H 0.077 0.923 38 H 0.043 0.957 39 H 0.099 0.901 40 H 0.049 0.951 41 H 0.050 0.950 42 H 0.060 0.940 43 H 0.097 0.903 44 H 0.088 0.912 45 H 0.144 0.856 46 H 0.144 0.856 47 H 0.149 0.851 48 H 0.154 0.846 49 H 0.379 0.621 50 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.302 1.207 17.385 21.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.043 3.957 3 H 0.037 0.963 4 C -0.009 4.009 5 N -0.329 5.329 6 C -0.064 4.064 7 C 0.298 3.702 8 O -0.472 6.472 9 C -0.119 4.119 10 H 0.138 0.862 11 C -0.200 4.200 12 C -0.122 4.122 13 C -0.111 4.111 14 C -0.092 4.092 15 C -0.114 4.114 16 C -0.178 4.178 17 C 0.047 3.953 18 F -0.132 7.132 19 C -0.175 4.175 20 C -0.109 4.109 21 N -0.365 5.365 22 C -0.366 4.366 23 H 0.074 0.926 24 C -0.254 4.254 25 N -0.608 5.608 26 Si 0.788 3.212 27 H -0.212 1.212 28 H -0.218 1.218 29 H -0.213 1.213 30 H 0.074 0.926 31 H 0.084 0.916 32 H 0.053 0.947 33 H 0.109 0.891 34 H 0.100 0.900 35 H 0.100 0.900 36 H 0.081 0.919 37 H 0.096 0.904 38 H 0.063 0.937 39 H 0.118 0.882 40 H 0.068 0.932 41 H 0.069 0.931 42 H 0.079 0.921 43 H 0.116 0.884 44 H 0.107 0.893 45 H 0.162 0.838 46 H 0.162 0.838 47 H 0.166 0.834 48 H 0.172 0.828 49 H 0.214 0.786 50 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 13.053 1.858 17.529 21.934 hybrid contribution -0.156 0.671 -1.120 1.315 sum 12.897 2.529 16.410 21.024 Atomic orbital electron populations 1.22224 0.97110 1.01441 1.00559 1.20751 0.93105 0.94698 0.87105 0.96328 1.21721 0.80053 1.01618 0.97472 1.47757 1.06380 1.22038 1.56691 1.22047 0.99415 0.87167 0.97756 1.21325 0.90924 0.81651 0.76349 1.90620 1.76292 1.30679 1.49608 1.21317 0.88986 1.03356 0.98223 0.86167 1.21848 1.02772 1.01453 0.93959 1.21276 0.94796 0.98282 0.97797 1.20665 0.93223 0.98865 0.98337 1.20187 0.98299 0.95589 0.95155 1.21207 0.96812 0.92954 1.00433 1.21348 1.02886 1.02049 0.91543 1.18023 1.00475 0.89424 0.87416 1.91464 1.84343 1.69767 1.67591 1.21382 1.01328 0.92708 1.02122 1.21231 0.97358 1.00358 0.91926 1.42484 1.78394 1.10226 1.05382 1.19347 1.35042 0.93513 0.88664 0.92581 1.25232 1.03109 0.96815 1.00255 1.69723 1.52476 1.09365 1.29196 0.85461 0.77539 0.77540 0.80675 1.21184 1.21763 1.21334 0.92601 0.91639 0.94669 0.89066 0.89986 0.90025 0.91945 0.90434 0.93750 0.88234 0.93221 0.93148 0.92141 0.88441 0.89346 0.83787 0.83838 0.83371 0.82847 0.78614 0.94013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.49 9.49 71.98 0.68 -4.80 16 2 C 0.15 6.22 3.20 44.99 0.14 6.36 16 3 H 0.02 0.87 8.08 -2.39 -0.02 0.85 16 4 C 0.12 3.82 5.01 86.38 0.43 4.26 16 5 N -0.60 -19.18 2.73 -846.75 -2.31 -21.50 16 6 C 0.08 2.21 9.32 127.77 1.19 3.40 16 7 C 0.51 16.64 6.85 87.66 0.60 17.24 16 8 O -0.59 -23.74 15.73 -3.03 -0.05 -23.79 16 9 C -0.10 -2.26 1.90 -11.54 -0.02 -2.28 16 10 H 0.12 2.06 7.49 -2.39 -0.02 2.05 16 11 C -0.14 -3.47 8.34 71.98 0.60 -2.87 16 12 C -0.08 -1.74 4.02 30.59 0.12 -1.62 16 13 C -0.07 -1.04 5.11 29.84 0.15 -0.89 16 14 C -0.09 -1.48 5.13 -19.86 -0.10 -1.58 16 15 C -0.10 -1.61 9.70 22.26 0.22 -1.40 16 16 C -0.16 -2.84 10.03 22.31 0.22 -2.62 16 17 C 0.07 1.27 7.30 22.37 0.16 1.44 16 18 F -0.15 -3.27 17.27 44.97 0.78 -2.49 16 19 C -0.16 -2.57 10.03 22.31 0.22 -2.34 16 20 C -0.09 -1.35 9.70 22.26 0.22 -1.13 16 21 N -0.72 -34.52 4.57 -322.94 -1.47 -35.99 16 22 C -0.23 -12.73 9.93 84.04 0.83 -11.90 16 23 H 0.06 3.12 7.83 -2.91 -0.02 3.09 16 24 C -0.06 -3.36 5.50 84.86 0.47 -2.90 16 25 N -0.96 -54.41 13.06 21.65 0.28 -54.12 16 26 Si 0.96 45.41 29.55 68.60 2.03 47.44 16 27 H -0.29 -13.30 7.11 99.48 0.71 -12.60 16 28 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 29 H -0.29 -13.45 7.11 99.48 0.71 -12.74 16 30 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 31 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 32 H 0.03 1.37 8.14 -2.38 -0.02 1.36 16 33 H 0.09 2.65 8.07 -2.39 -0.02 2.63 16 34 H 0.08 2.67 7.47 -2.39 -0.02 2.65 16 35 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 36 H 0.06 2.13 5.71 -2.39 -0.01 2.12 16 37 H 0.08 2.14 4.74 -2.38 -0.01 2.13 16 38 H 0.04 1.21 8.11 -2.38 -0.02 1.19 16 39 H 0.10 1.69 7.04 -2.38 -0.02 1.67 16 40 H 0.05 1.49 5.97 -2.39 -0.01 1.48 16 41 H 0.05 1.29 8.05 -2.39 -0.02 1.28 16 42 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 43 H 0.10 0.99 8.09 -2.39 -0.02 0.97 16 44 H 0.09 1.12 6.72 -2.39 -0.02 1.10 16 45 H 0.14 2.01 8.06 -2.91 -0.02 1.98 16 46 H 0.14 2.11 8.06 -2.91 -0.02 2.09 16 47 H 0.15 1.86 8.06 -2.91 -0.02 1.83 16 48 H 0.15 1.55 8.06 -2.91 -0.02 1.53 16 49 H 0.38 18.44 5.38 -92.71 -0.50 17.94 16 50 H 0.25 13.98 8.31 -92.71 -0.77 13.21 16 Total: -1.00 -68.37 404.76 5.83 -62.54 By element: Atomic # 1 Polarization: 31.12 SS G_CDS: 0.43 Total: 31.56 kcal Atomic # 6 Polarization: -9.79 SS G_CDS: 6.15 Total: -3.64 kcal Atomic # 7 Polarization: -108.11 SS G_CDS: -3.50 Total: -111.61 kcal Atomic # 8 Polarization: -23.74 SS G_CDS: -0.05 Total: -23.79 kcal Atomic # 9 Polarization: -3.27 SS G_CDS: 0.78 Total: -2.49 kcal Atomic # 14 Polarization: 45.41 SS G_CDS: 2.03 Total: 47.44 kcal Total: -68.37 5.83 -62.54 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001283621306.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.597 kcal (2) G-P(sol) polarization free energy of solvation -68.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds