Wall clock time and date at job start Tue Mar 31 2020 20:07:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09007 * 109.47272 * 2 1 4 4 C 1.52998 * 109.47729 * 239.99862 * 2 1 3 5 5 N 1.46492 * 109.47672 * 184.99999 * 4 2 1 6 6 C 1.46504 * 120.00190 * 270.00595 * 5 4 2 7 7 C 1.34781 * 119.99993 * 89.99813 * 5 4 2 8 8 O 1.21275 * 119.99673 * 357.36974 * 7 5 4 9 9 C 1.50706 * 119.99881 * 177.64322 * 7 5 4 10 10 H 1.09003 * 109.46959 * 317.50521 * 9 7 5 11 11 C 1.52999 * 109.47023 * 77.50702 * 9 7 5 12 12 C 1.52995 * 109.46809 * 197.50352 * 9 7 5 13 13 C 1.53005 * 109.46910 * 174.99846 * 12 9 7 14 14 C 1.50700 * 109.46890 * 179.97438 * 13 12 9 15 15 C 1.38251 * 119.97651 * 269.72760 * 14 13 12 16 16 C 1.38198 * 120.02498 * 179.72982 * 15 14 13 17 17 C 1.38460 * 119.97170 * 0.56688 * 16 15 14 18 18 F 1.35101 * 120.02486 * 179.68633 * 17 16 15 19 19 C 1.38460 * 119.95284 * 359.70862 * 17 16 15 20 20 C 1.38195 * 119.97281 * 359.97438 * 19 17 16 21 21 N 1.46505 * 109.47247 * 119.99602 * 2 1 3 22 22 C 1.36934 * 120.00101 * 275.00388 * 21 2 1 23 23 H 1.07994 * 120.00245 * 0.02562 * 22 21 2 24 24 C 1.38813 * 119.99774 * 179.97438 * 22 21 2 25 25 N 1.31619 * 120.00009 * 359.97438 * 24 22 21 26 26 Si 1.86797 * 119.99954 * 180.02562 * 24 22 21 27 27 H 1.48499 * 109.47333 * 359.97438 * 26 24 22 28 28 H 1.48496 * 109.47532 * 119.99944 * 26 24 22 29 29 H 1.48506 * 109.46909 * 239.99836 * 26 24 22 30 30 H 1.09000 * 109.47427 * 300.00357 * 1 2 3 31 31 H 1.09002 * 109.46965 * 60.00318 * 1 2 3 32 32 H 1.08997 * 109.47234 * 179.97438 * 1 2 3 33 33 H 1.09003 * 109.46747 * 64.99859 * 4 2 1 34 34 H 1.08999 * 109.46832 * 305.00334 * 4 2 1 35 35 H 1.09001 * 109.46516 * 266.33849 * 6 5 4 36 36 H 1.08998 * 109.47494 * 26.33352 * 6 5 4 37 37 H 1.08995 * 109.47498 * 146.34052 * 6 5 4 38 38 H 1.09004 * 109.46767 * 187.50893 * 11 9 7 39 39 H 1.09007 * 109.47235 * 307.50207 * 11 9 7 40 40 H 1.08994 * 109.47095 * 67.50359 * 11 9 7 41 41 H 1.08999 * 109.47361 * 295.00119 * 12 9 7 42 42 H 1.09002 * 109.47288 * 55.00495 * 12 9 7 43 43 H 1.08994 * 109.47257 * 299.99824 * 13 12 9 44 44 H 1.09002 * 109.46615 * 60.00237 * 13 12 9 45 45 H 1.07993 * 119.98280 * 359.97438 * 15 14 13 46 46 H 1.07999 * 120.01256 * 180.25360 * 16 15 14 47 47 H 1.07999 * 120.01363 * 179.97438 * 19 17 16 48 48 H 1.07994 * 119.98819 * 180.02562 * 20 19 17 49 49 H 0.97004 * 119.99461 * 94.99954 * 21 2 1 50 50 H 0.97006 * 119.99771 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2492 5 7 3.5001 -0.8264 -1.1905 6 6 4.3344 0.2341 -1.7611 7 6 4.0758 -1.8986 -0.6114 8 8 3.3860 -2.7531 -0.0968 9 6 5.5768 -2.0326 -0.5981 10 1 5.9757 -1.7477 -1.5717 11 6 6.1609 -1.1176 0.4801 12 6 5.9566 -3.4836 -0.2960 13 6 7.4739 -3.6469 -0.4052 14 6 7.8480 -5.0760 -0.1071 15 6 8.1378 -5.4581 1.1896 16 6 8.4755 -6.7696 1.4650 17 6 8.5351 -7.6984 0.4398 18 9 8.8713 -8.9793 0.7069 19 6 8.2503 -7.3133 -0.8593 20 6 7.9064 -6.0028 -1.1313 21 7 2.0183 -0.6905 1.1962 22 6 2.1491 -0.0074 2.3758 23 1 1.8918 1.0403 2.4244 24 6 2.6113 -0.6619 3.5093 25 7 2.9234 -1.9392 3.4505 26 14 2.7890 0.2698 5.1186 27 1 2.3752 1.6823 4.9211 28 1 1.9279 -0.3588 6.1523 29 1 4.2058 0.2269 5.5616 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 1.7517 -0.1583 -2.1369 34 1 1.6055 -1.7198 -1.2951 35 1 4.5965 -0.0225 -2.7875 36 1 3.7838 1.1748 -1.7511 37 1 5.2437 0.3391 -1.1694 38 1 7.2482 -1.1124 0.4021 39 1 5.7819 -0.1050 0.3417 40 1 5.8689 -1.4835 1.4644 41 1 5.6351 -3.7408 0.7132 42 1 5.4677 -4.1438 -1.0124 43 1 7.7954 -3.3898 -1.4144 44 1 7.9628 -2.9867 0.3112 45 1 8.0963 -4.7323 1.9882 46 1 8.6978 -7.0687 2.4786 47 1 8.2968 -8.0369 -1.6597 48 1 7.6838 -5.7023 -2.1444 49 1 2.2490 -1.6317 1.1527 50 1 3.2468 -2.3964 4.2425 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001283621308.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:07:06 Heat of formation + Delta-G solvation = -55.196570 kcal Electronic energy + Delta-G solvation = -29732.274531 eV Core-core repulsion = 25673.914516 eV Total energy + Delta-G solvation = -4058.360015 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -48.96671 -39.79032 -39.17916 -36.24451 -35.09031 -34.28243 -32.17613 -31.54365 -31.23151 -28.63576 -27.96081 -26.85864 -25.82799 -24.55319 -23.53172 -23.15236 -22.04668 -20.74181 -19.71341 -18.46113 -17.75728 -17.19024 -16.59420 -16.43246 -15.91323 -15.65777 -15.36605 -15.01567 -14.64488 -14.51913 -14.13485 -13.73827 -13.66473 -13.49566 -13.40364 -13.21337 -12.89426 -12.66312 -12.50014 -12.18815 -12.11626 -11.97782 -11.87697 -11.55151 -11.43924 -11.31916 -11.24149 -11.08908 -11.01816 -10.79801 -10.60507 -10.55104 -10.42209 -10.29344 -9.94664 -9.49911 -9.20784 -8.98210 -8.78422 -8.57829 -7.99001 -6.75335 -5.57293 -2.86483 1.04766 1.13403 3.30457 3.45463 3.47317 3.53311 3.55443 3.61854 4.17404 4.59254 4.65692 4.69196 4.78577 4.88368 5.04986 5.17953 5.20254 5.31036 5.38222 5.45744 5.51474 5.56045 5.63124 5.65530 5.68181 5.76617 5.80543 5.81579 5.88845 5.96744 6.01622 6.06735 6.07554 6.13801 6.17596 6.22789 6.25238 6.33345 6.45067 6.51166 6.62111 6.73321 6.74776 6.80874 6.87150 7.03339 7.22089 7.81393 7.97178 8.58811 8.91108 9.71899 10.36384 10.76522 11.62555 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.011284 B = 0.003086 C = 0.002669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2480.880571 B = 9071.047215 C =10489.386062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.154 3.846 3 H 0.041 0.959 4 C 0.110 3.890 5 N -0.611 5.611 6 C 0.078 3.922 7 C 0.524 3.476 8 O -0.512 6.512 9 C -0.101 4.101 10 H 0.081 0.919 11 C -0.144 4.144 12 C -0.094 4.094 13 C -0.081 4.081 14 C -0.083 4.083 15 C -0.085 4.085 16 C -0.150 4.150 17 C 0.086 3.914 18 F -0.145 7.145 19 C -0.153 4.153 20 C -0.090 4.090 21 N -0.720 5.720 22 C -0.236 4.236 23 H 0.063 0.937 24 C -0.011 4.011 25 N -0.917 5.917 26 Si 0.895 3.105 27 H -0.283 1.283 28 H -0.294 1.294 29 H -0.294 1.294 30 H 0.054 0.946 31 H 0.034 0.966 32 H 0.047 0.953 33 H 0.068 0.932 34 H 0.076 0.924 35 H 0.045 0.955 36 H 0.067 0.933 37 H 0.073 0.927 38 H 0.057 0.943 39 H 0.062 0.938 40 H 0.075 0.925 41 H 0.082 0.918 42 H 0.064 0.936 43 H 0.071 0.929 44 H 0.078 0.922 45 H 0.135 0.865 46 H 0.134 0.866 47 H 0.132 0.868 48 H 0.131 0.869 49 H 0.400 0.600 50 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.027 -2.663 -13.879 18.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.043 3.957 3 H 0.059 0.941 4 C -0.013 4.013 5 N -0.345 5.345 6 C -0.065 4.065 7 C 0.312 3.688 8 O -0.386 6.386 9 C -0.122 4.122 10 H 0.099 0.901 11 C -0.201 4.201 12 C -0.132 4.132 13 C -0.118 4.118 14 C -0.083 4.083 15 C -0.103 4.103 16 C -0.169 4.169 17 C 0.067 3.933 18 F -0.123 7.123 19 C -0.172 4.172 20 C -0.108 4.108 21 N -0.367 5.367 22 C -0.367 4.367 23 H 0.081 0.919 24 C -0.208 4.208 25 N -0.565 5.565 26 Si 0.727 3.273 27 H -0.209 1.209 28 H -0.221 1.221 29 H -0.221 1.221 30 H 0.073 0.927 31 H 0.053 0.947 32 H 0.066 0.934 33 H 0.086 0.914 34 H 0.095 0.905 35 H 0.064 0.936 36 H 0.086 0.914 37 H 0.091 0.909 38 H 0.076 0.924 39 H 0.081 0.919 40 H 0.094 0.906 41 H 0.101 0.899 42 H 0.083 0.917 43 H 0.090 0.910 44 H 0.097 0.903 45 H 0.153 0.847 46 H 0.152 0.848 47 H 0.150 0.850 48 H 0.149 0.851 49 H 0.239 0.761 50 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 11.690 -3.092 -13.457 18.092 hybrid contribution 0.090 0.150 1.082 1.096 sum 11.780 -2.942 -12.375 17.337 Atomic orbital electron populations 1.22421 0.99342 1.00903 0.99814 1.20630 0.91873 0.95468 0.87754 0.94120 1.21805 0.79655 1.01864 0.98008 1.47582 1.06426 1.21118 1.59339 1.21814 0.96169 0.91065 0.97493 1.20343 0.90025 0.81233 0.77219 1.90685 1.64407 1.41333 1.42135 1.21209 0.92877 0.97635 1.00517 0.90100 1.21835 0.99539 0.99191 0.99529 1.21396 0.93165 0.94381 1.04269 1.20710 0.97026 0.91727 1.02382 1.20025 0.98491 0.96572 0.93187 1.21021 0.97210 0.95307 0.96725 1.21163 1.03253 0.93460 0.99011 1.17725 1.02311 0.78969 0.94305 1.91482 1.90091 1.36007 1.94742 1.21102 1.03251 0.97656 0.95212 1.20917 0.98456 0.91904 0.99541 1.42770 1.77519 1.11888 1.04487 1.19220 1.36241 0.93542 0.87737 0.91908 1.24692 1.02774 0.95853 0.97464 1.69766 1.50634 1.08189 1.27946 0.86305 0.77161 0.78816 0.85064 1.20855 1.22111 1.22145 0.92735 0.94731 0.93430 0.91404 0.90526 0.93600 0.91407 0.90855 0.92390 0.91869 0.90608 0.89915 0.91739 0.91032 0.90342 0.84719 0.84829 0.85001 0.85111 0.76057 0.93986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.06 9.49 37.16 0.35 -2.70 16 2 C 0.15 3.14 3.20 -67.93 -0.22 2.92 16 3 H 0.04 0.83 8.08 -51.93 -0.42 0.41 16 4 C 0.11 1.88 5.12 -4.05 -0.02 1.86 16 5 N -0.61 -10.03 2.77 -181.58 -0.50 -10.53 16 6 C 0.08 0.93 9.77 59.85 0.58 1.52 16 7 C 0.52 9.74 6.22 -10.98 -0.07 9.67 16 8 O -0.51 -11.97 13.29 5.56 0.07 -11.89 16 9 C -0.10 -1.44 1.90 -91.77 -0.17 -1.61 16 10 H 0.08 0.90 7.50 -51.93 -0.39 0.51 16 11 C -0.14 -2.11 8.40 37.16 0.31 -1.80 16 12 C -0.09 -1.32 4.02 -26.73 -0.11 -1.43 16 13 C -0.08 -0.86 5.10 -27.88 -0.14 -1.00 16 14 C -0.08 -0.92 5.13 -104.61 -0.54 -1.46 16 15 C -0.08 -0.97 9.70 -39.59 -0.38 -1.36 16 16 C -0.15 -1.72 10.03 -39.51 -0.40 -2.12 16 17 C 0.09 1.02 7.30 -39.42 -0.29 0.73 16 18 F -0.14 -1.80 17.27 2.25 0.04 -1.76 16 19 C -0.15 -1.62 10.03 -39.52 -0.40 -2.02 16 20 C -0.09 -0.93 9.70 -39.59 -0.38 -1.31 16 21 N -0.72 -18.66 4.52 -53.42 -0.24 -18.90 16 22 C -0.24 -6.66 9.93 -15.06 -0.15 -6.81 16 23 H 0.06 1.74 7.83 -52.49 -0.41 1.33 16 24 C -0.01 -0.33 5.50 -17.43 -0.10 -0.43 16 25 N -0.92 -28.34 13.06 55.49 0.72 -27.61 16 26 Si 0.89 22.71 29.55 -169.99 -5.02 17.69 16 27 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 28 H -0.29 -7.58 7.11 56.52 0.40 -7.18 16 29 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 30 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 31 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 32 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 33 H 0.07 0.91 8.07 -51.93 -0.42 0.49 16 34 H 0.08 1.44 7.46 -51.93 -0.39 1.05 16 35 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.07 0.76 8.04 -51.93 -0.42 0.34 16 37 H 0.07 0.84 4.69 -51.93 -0.24 0.60 16 38 H 0.06 0.65 6.95 -51.93 -0.36 0.29 16 39 H 0.06 0.95 5.93 -51.93 -0.31 0.64 16 40 H 0.07 1.42 8.13 -51.93 -0.42 1.00 16 41 H 0.08 1.45 8.07 -51.93 -0.42 1.03 16 42 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 43 H 0.07 0.62 8.09 -51.93 -0.42 0.20 16 44 H 0.08 0.79 6.68 -51.93 -0.35 0.44 16 45 H 0.13 1.43 8.06 -52.49 -0.42 1.00 16 46 H 0.13 1.32 8.06 -52.49 -0.42 0.90 16 47 H 0.13 1.13 8.06 -52.49 -0.42 0.71 16 48 H 0.13 1.06 8.06 -52.49 -0.42 0.64 16 49 H 0.40 11.32 4.91 -40.82 -0.20 11.11 16 50 H 0.25 7.52 8.31 -40.82 -0.34 7.18 16 LS Contribution 403.98 15.07 6.09 6.09 Total: -1.00 -34.36 403.98 -9.06 -43.42 By element: Atomic # 1 Polarization: 18.94 SS G_CDS: -8.10 Total: 10.83 kcal Atomic # 6 Polarization: -5.22 SS G_CDS: -2.11 Total: -7.33 kcal Atomic # 7 Polarization: -57.02 SS G_CDS: -0.02 Total: -57.04 kcal Atomic # 8 Polarization: -11.97 SS G_CDS: 0.07 Total: -11.89 kcal Atomic # 9 Polarization: -1.80 SS G_CDS: 0.04 Total: -1.76 kcal Atomic # 14 Polarization: 22.71 SS G_CDS: -5.02 Total: 17.69 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -34.36 -9.06 -43.42 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001283621308.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.779 kcal (2) G-P(sol) polarization free energy of solvation -34.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.418 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds