Wall clock time and date at job start Tue Mar 31 2020 20:07:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.46858 * 2 1 4 4 C 1.52998 * 109.46761 * 240.00179 * 2 1 3 5 5 N 1.46505 * 109.47258 * 184.99948 * 4 2 1 6 6 C 1.46492 * 119.99995 * 270.00468 * 5 4 2 7 7 C 1.34779 * 119.99656 * 89.99647 * 5 4 2 8 8 O 1.21270 * 120.00394 * 0.02562 * 7 5 4 9 9 C 1.50702 * 119.99317 * 180.02562 * 7 5 4 10 10 H 1.09004 * 109.47560 * 60.00403 * 9 7 5 11 11 C 1.53002 * 109.47186 * 299.99593 * 9 7 5 12 12 C 1.53008 * 109.46612 * 180.02562 * 9 7 5 13 13 C 1.53004 * 109.46980 * 184.99975 * 12 9 7 14 14 C 1.50693 * 109.47123 * 179.97438 * 13 12 9 15 15 C 1.38250 * 119.97504 * 90.00147 * 14 13 12 16 16 C 1.38196 * 120.02428 * 180.23537 * 15 14 13 17 17 C 1.38457 * 119.97339 * 359.50816 * 16 15 14 18 18 F 1.35103 * 120.02362 * 180.21068 * 17 16 15 19 19 C 1.38456 * 119.94977 * 0.48564 * 17 16 15 20 20 C 1.38199 * 119.97506 * 359.75344 * 19 17 16 21 21 N 1.46495 * 109.47331 * 120.00292 * 2 1 3 22 22 C 1.36941 * 119.99984 * 275.00071 * 21 2 1 23 23 H 1.07995 * 119.99632 * 359.97438 * 22 21 2 24 24 C 1.38811 * 120.00013 * 179.97438 * 22 21 2 25 25 N 1.31621 * 120.00185 * 0.02562 * 24 22 21 26 26 Si 1.86802 * 120.00132 * 179.97438 * 24 22 21 27 27 H 1.48506 * 109.46626 * 0.02562 * 26 24 22 28 28 H 1.48506 * 109.46948 * 119.99954 * 26 24 22 29 29 H 1.48493 * 109.47612 * 240.00410 * 26 24 22 30 30 H 1.09001 * 109.46883 * 299.99654 * 1 2 3 31 31 H 1.09000 * 109.47767 * 59.99721 * 1 2 3 32 32 H 1.08998 * 109.47587 * 180.02562 * 1 2 3 33 33 H 1.09006 * 109.47252 * 64.99998 * 4 2 1 34 34 H 1.09007 * 109.47512 * 304.99973 * 4 2 1 35 35 H 1.08998 * 109.47204 * 269.99732 * 6 5 4 36 36 H 1.08999 * 109.47397 * 29.99271 * 6 5 4 37 37 H 1.09003 * 109.47505 * 149.99382 * 6 5 4 38 38 H 1.08999 * 109.47120 * 300.00630 * 11 9 7 39 39 H 1.09000 * 109.46643 * 60.00765 * 11 9 7 40 40 H 1.09001 * 109.47216 * 180.02562 * 11 9 7 41 41 H 1.08992 * 109.47233 * 64.99894 * 12 9 7 42 42 H 1.08999 * 109.46739 * 304.99781 * 12 9 7 43 43 H 1.08999 * 109.46918 * 59.99639 * 13 12 9 44 44 H 1.09006 * 109.46837 * 300.00023 * 13 12 9 45 45 H 1.08002 * 119.98396 * 359.94944 * 15 14 13 46 46 H 1.08004 * 120.00978 * 179.72210 * 16 15 14 47 47 H 1.07999 * 120.01335 * 179.72141 * 19 17 16 48 48 H 1.07999 * 119.98943 * 179.97438 * 20 19 17 49 49 H 0.97003 * 120.00294 * 94.99553 * 21 2 1 50 50 H 0.96996 * 120.00185 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2493 5 7 3.5000 -0.8264 -1.1907 6 6 4.3342 0.2340 -1.7613 7 6 4.0756 -1.8987 -0.6117 8 8 3.3850 -2.7767 -0.1396 9 6 5.5776 -2.0066 -0.5510 10 1 5.9806 -1.1595 0.0042 11 6 6.1469 -2.0031 -1.9711 12 6 5.9673 -3.3091 0.1510 13 6 7.4866 -3.3603 0.3240 14 6 7.8705 -4.6427 1.0160 15 6 8.1491 -5.7732 0.2705 16 6 8.4965 -6.9511 0.9042 17 6 8.5753 -6.9962 2.2858 18 9 8.9189 -8.1461 2.9062 19 6 8.2961 -5.8634 3.0314 20 6 7.9441 -4.6878 2.3957 21 7 2.0183 -0.6906 1.1961 22 6 2.1491 -0.0075 2.3757 23 1 1.8926 1.0404 2.4241 24 6 2.6114 -0.6621 3.5092 25 7 2.9245 -1.9391 3.4501 26 14 2.7905 0.2699 5.1182 27 1 2.3765 1.6823 4.9208 28 1 1.9293 -0.3580 6.1524 29 1 4.2073 0.2261 5.5606 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3634 -1.0276 0.0005 33 1 1.7515 -0.1582 -2.1370 34 1 1.6052 -1.7198 -1.2953 35 1 4.5423 0.0094 -2.8074 36 1 3.8089 1.1866 -1.6919 37 1 5.2721 0.2952 -1.2093 38 1 5.7439 -2.8502 -2.5262 39 1 5.8693 -1.0755 -2.4716 40 1 7.2332 -2.0816 -1.9272 41 1 5.6413 -4.1576 -0.4504 42 1 5.4885 -3.3518 1.1293 43 1 7.8126 -2.5117 0.9255 44 1 7.9654 -3.3175 -0.6543 45 1 8.0909 -5.7368 -0.8073 46 1 8.7098 -7.8353 0.3218 47 1 8.3528 -5.8986 4.1093 48 1 7.7259 -3.8042 2.9771 49 1 2.2490 -1.6318 1.1525 50 1 3.2478 -2.3964 4.2420 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001283621309.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:07:11 Heat of formation + Delta-G solvation = -53.076572 kcal Electronic energy + Delta-G solvation = -29792.101096 eV Core-core repulsion = 25733.833011 eV Total energy + Delta-G solvation = -4058.268085 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -48.89803 -39.82090 -39.12399 -36.24169 -35.15727 -34.32545 -32.20392 -31.51832 -31.15133 -28.66077 -27.99507 -26.83720 -25.89047 -24.54894 -23.54837 -23.07493 -22.02707 -20.70506 -19.69471 -18.56689 -17.68569 -17.25950 -16.47096 -16.35313 -15.91496 -15.59296 -15.37573 -15.18581 -14.66611 -14.35330 -14.11369 -13.74964 -13.62708 -13.46840 -13.38016 -13.13175 -13.08406 -12.76277 -12.49653 -12.17872 -12.17174 -12.05507 -11.88016 -11.53305 -11.42313 -11.28863 -11.23498 -11.10310 -10.97615 -10.80510 -10.64720 -10.56142 -10.35845 -10.31018 -9.95881 -9.51332 -9.12645 -9.01431 -8.80057 -8.50667 -8.00501 -6.77502 -5.59043 -2.88486 1.12551 1.21526 3.32205 3.46380 3.50865 3.52764 3.54774 3.62298 4.24741 4.66636 4.67837 4.71657 4.85438 4.86271 5.10478 5.16834 5.25348 5.27078 5.31409 5.46309 5.50893 5.51685 5.59016 5.66413 5.69595 5.76635 5.80020 5.86494 5.87695 5.95707 6.00496 6.06358 6.06946 6.09134 6.12231 6.19927 6.24182 6.32418 6.41925 6.44458 6.61111 6.72254 6.75219 6.86181 6.88848 7.02205 7.21083 7.80181 7.96103 8.57277 8.89899 9.69976 10.33918 10.73222 11.60944 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.009909 B = 0.003475 C = 0.002793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2824.948036 B = 8056.284444 C =10023.094629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.154 3.846 3 H 0.041 0.959 4 C 0.110 3.890 5 N -0.610 5.610 6 C 0.084 3.916 7 C 0.527 3.473 8 O -0.515 6.515 9 C -0.105 4.105 10 H 0.094 0.906 11 C -0.157 4.157 12 C -0.094 4.094 13 C -0.081 4.081 14 C -0.082 4.082 15 C -0.090 4.090 16 C -0.154 4.154 17 C 0.086 3.914 18 F -0.145 7.145 19 C -0.150 4.150 20 C -0.082 4.082 21 N -0.721 5.721 22 C -0.237 4.237 23 H 0.064 0.936 24 C -0.012 4.012 25 N -0.918 5.918 26 Si 0.896 3.104 27 H -0.283 1.283 28 H -0.293 1.293 29 H -0.294 1.294 30 H 0.054 0.946 31 H 0.034 0.966 32 H 0.047 0.953 33 H 0.068 0.932 34 H 0.077 0.923 35 H 0.050 0.950 36 H 0.065 0.935 37 H 0.069 0.931 38 H 0.056 0.944 39 H 0.068 0.932 40 H 0.063 0.937 41 H 0.065 0.935 42 H 0.086 0.914 43 H 0.074 0.926 44 H 0.073 0.927 45 H 0.130 0.870 46 H 0.131 0.869 47 H 0.134 0.866 48 H 0.135 0.865 49 H 0.399 0.601 50 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.959 -2.046 -12.900 17.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.043 3.957 3 H 0.059 0.941 4 C -0.014 4.014 5 N -0.344 5.344 6 C -0.060 4.060 7 C 0.315 3.685 8 O -0.389 6.389 9 C -0.126 4.126 10 H 0.113 0.887 11 C -0.214 4.214 12 C -0.132 4.132 13 C -0.118 4.118 14 C -0.082 4.082 15 C -0.108 4.108 16 C -0.173 4.173 17 C 0.067 3.933 18 F -0.124 7.124 19 C -0.168 4.168 20 C -0.101 4.101 21 N -0.367 5.367 22 C -0.369 4.369 23 H 0.082 0.918 24 C -0.208 4.208 25 N -0.566 5.566 26 Si 0.728 3.272 27 H -0.208 1.208 28 H -0.221 1.221 29 H -0.221 1.221 30 H 0.073 0.927 31 H 0.053 0.947 32 H 0.066 0.934 33 H 0.086 0.914 34 H 0.096 0.904 35 H 0.068 0.932 36 H 0.084 0.916 37 H 0.088 0.912 38 H 0.075 0.925 39 H 0.087 0.913 40 H 0.082 0.918 41 H 0.084 0.916 42 H 0.104 0.896 43 H 0.093 0.907 44 H 0.091 0.909 45 H 0.148 0.852 46 H 0.149 0.851 47 H 0.151 0.849 48 H 0.153 0.847 49 H 0.238 0.762 50 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 11.622 -2.481 -12.489 17.239 hybrid contribution 0.107 0.176 1.253 1.270 sum 11.729 -2.305 -11.236 16.405 Atomic orbital electron populations 1.22418 0.99282 1.00934 0.99843 1.20629 0.91907 0.95482 0.87696 0.94065 1.21806 0.79613 1.01931 0.98002 1.47559 1.06443 1.21092 1.59297 1.21808 0.95814 0.91076 0.97279 1.20304 0.90019 0.81371 0.76845 1.90688 1.64453 1.39752 1.44025 1.21206 0.92980 1.00592 0.97805 0.88750 1.22106 1.01090 1.02903 0.95284 1.21367 0.93203 0.95818 1.02765 1.20715 0.96959 0.94068 1.00081 1.20004 0.98459 0.96058 0.93682 1.20896 0.98328 0.91520 1.00104 1.21082 1.03884 0.99706 0.92628 1.17719 1.02313 0.82298 0.91018 1.91478 1.89931 1.47843 1.83120 1.21163 1.02641 0.92290 1.00739 1.21043 0.97076 0.97756 0.94177 1.42735 1.77585 1.11810 1.04582 1.19234 1.36373 0.93580 0.87720 0.91817 1.24708 1.02691 0.95879 0.97546 1.69757 1.50567 1.08235 1.28029 0.86284 0.77160 0.78815 0.84949 1.20820 1.22065 1.22132 0.92726 0.94683 0.93408 0.91372 0.90424 0.93181 0.91626 0.91198 0.92482 0.91335 0.91799 0.91581 0.89567 0.90714 0.90858 0.85168 0.85057 0.84851 0.84672 0.76218 0.93929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.05 9.49 37.16 0.35 -2.70 16 2 C 0.15 3.14 3.20 -67.94 -0.22 2.92 16 3 H 0.04 0.84 8.08 -51.93 -0.42 0.42 16 4 C 0.11 1.87 5.14 -4.04 -0.02 1.85 16 5 N -0.61 -9.97 2.77 -181.57 -0.50 -10.47 16 6 C 0.08 0.98 8.80 59.84 0.53 1.51 16 7 C 0.53 9.81 6.37 -10.98 -0.07 9.74 16 8 O -0.52 -12.03 13.24 5.57 0.07 -11.96 16 9 C -0.10 -1.50 1.92 -91.77 -0.18 -1.68 16 10 H 0.09 1.36 7.40 -51.93 -0.38 0.97 16 11 C -0.16 -1.61 8.58 37.16 0.32 -1.29 16 12 C -0.09 -1.40 4.01 -26.73 -0.11 -1.51 16 13 C -0.08 -0.93 5.10 -27.88 -0.14 -1.07 16 14 C -0.08 -1.00 5.13 -104.62 -0.54 -1.54 16 15 C -0.09 -1.00 9.70 -39.59 -0.38 -1.38 16 16 C -0.15 -1.75 10.03 -39.52 -0.40 -2.15 16 17 C 0.09 1.10 7.30 -39.42 -0.29 0.81 16 18 F -0.15 -1.92 17.27 2.25 0.04 -1.88 16 19 C -0.15 -1.89 10.03 -39.52 -0.40 -2.29 16 20 C -0.08 -1.06 9.70 -39.59 -0.38 -1.45 16 21 N -0.72 -18.76 4.52 -53.43 -0.24 -19.00 16 22 C -0.24 -6.74 9.93 -15.06 -0.15 -6.89 16 23 H 0.06 1.77 7.83 -52.49 -0.41 1.36 16 24 C -0.01 -0.35 5.50 -17.43 -0.10 -0.44 16 25 N -0.92 -28.42 13.06 55.49 0.72 -27.70 16 26 Si 0.90 22.75 29.55 -169.99 -5.02 17.73 16 27 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 28 H -0.29 -7.56 7.11 56.52 0.40 -7.16 16 29 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 30 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 31 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.07 0.91 8.07 -51.93 -0.42 0.49 16 34 H 0.08 1.46 7.42 -51.92 -0.39 1.07 16 35 H 0.05 0.46 6.95 -51.93 -0.36 0.10 16 36 H 0.06 0.73 8.07 -51.93 -0.42 0.31 16 37 H 0.07 0.78 6.01 -51.93 -0.31 0.46 16 38 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 39 H 0.07 0.62 4.53 -51.93 -0.24 0.39 16 40 H 0.06 0.53 6.56 -51.93 -0.34 0.19 16 41 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 42 H 0.09 1.67 7.95 -51.93 -0.41 1.26 16 43 H 0.07 0.83 8.08 -51.93 -0.42 0.41 16 44 H 0.07 0.67 6.51 -51.93 -0.34 0.34 16 45 H 0.13 1.14 8.06 -52.49 -0.42 0.72 16 46 H 0.13 1.21 8.06 -52.48 -0.42 0.79 16 47 H 0.13 1.49 8.06 -52.49 -0.42 1.07 16 48 H 0.14 1.68 8.06 -52.49 -0.42 1.26 16 49 H 0.40 11.33 5.02 -40.82 -0.20 11.12 16 50 H 0.25 7.54 8.31 -40.82 -0.34 7.20 16 LS Contribution 401.41 15.07 6.05 6.05 Total: -1.00 -34.54 401.41 -9.05 -43.59 By element: Atomic # 1 Polarization: 19.20 SS G_CDS: -8.00 Total: 11.19 kcal Atomic # 6 Polarization: -5.38 SS G_CDS: -2.17 Total: -7.55 kcal Atomic # 7 Polarization: -57.15 SS G_CDS: -0.02 Total: -57.17 kcal Atomic # 8 Polarization: -12.03 SS G_CDS: 0.07 Total: -11.96 kcal Atomic # 9 Polarization: -1.92 SS G_CDS: 0.04 Total: -1.88 kcal Atomic # 14 Polarization: 22.75 SS G_CDS: -5.02 Total: 17.73 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -34.54 -9.05 -43.59 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001283621309.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.483 kcal (2) G-P(sol) polarization free energy of solvation -34.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.593 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds