Wall clock time and date at job start Tue Mar 31 2020 20:07:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.47298 * 2 1 4 4 C 1.53002 * 109.46954 * 240.00331 * 2 1 3 5 5 C 1.52996 * 109.47340 * 175.00279 * 4 2 1 6 6 N 1.46500 * 109.47364 * 179.97438 * 5 4 2 7 7 C 1.34777 * 119.99750 * 179.97438 * 6 5 4 8 8 O 1.21275 * 120.00643 * 0.02562 * 7 6 5 9 9 C 1.50708 * 119.99487 * 180.02562 * 7 6 5 10 10 H 1.08996 * 109.46993 * 299.99601 * 9 7 6 11 11 C 1.52997 * 109.47141 * 60.00428 * 9 7 6 12 12 C 1.53006 * 109.46735 * 180.02562 * 9 7 6 13 13 C 1.52999 * 109.46811 * 175.00023 * 12 9 7 14 14 C 1.50696 * 109.47144 * 180.02562 * 13 12 9 15 15 C 1.38240 * 119.97442 * 269.72676 * 14 13 12 16 16 C 1.38203 * 120.02539 * 179.72162 * 15 14 13 17 17 C 1.38459 * 119.97185 * 0.57232 * 16 15 14 18 18 F 1.35103 * 120.02421 * 179.67843 * 17 16 15 19 19 C 1.38452 * 119.95269 * 359.70486 * 17 16 15 20 20 C 1.38205 * 119.97073 * 359.97438 * 19 17 16 21 21 N 1.46503 * 109.47299 * 120.00243 * 2 1 3 22 22 C 1.36935 * 119.99833 * 274.99489 * 21 2 1 23 23 H 1.07998 * 119.99936 * 0.02562 * 22 21 2 24 24 C 1.38816 * 119.99860 * 179.97438 * 22 21 2 25 25 N 1.31621 * 119.99681 * 0.02562 * 24 22 21 26 26 Si 1.86797 * 119.99753 * 180.02562 * 24 22 21 27 27 H 1.48494 * 109.47581 * 0.02562 * 26 24 22 28 28 H 1.48495 * 109.46929 * 120.00751 * 26 24 22 29 29 H 1.48503 * 109.46784 * 240.00272 * 26 24 22 30 30 H 1.09001 * 109.46962 * 299.99474 * 1 2 3 31 31 H 1.08999 * 109.47318 * 59.99989 * 1 2 3 32 32 H 1.09001 * 109.46817 * 179.97438 * 1 2 3 33 33 H 1.08992 * 109.47461 * 54.99663 * 4 2 1 34 34 H 1.09004 * 109.46930 * 294.99882 * 4 2 1 35 35 H 1.09004 * 109.47694 * 59.99593 * 5 4 2 36 36 H 1.09004 * 109.46785 * 299.99692 * 5 4 2 37 37 H 0.96996 * 119.99986 * 359.97438 * 6 5 4 38 38 H 1.09002 * 109.47153 * 299.99670 * 11 9 7 39 39 H 1.09001 * 109.46832 * 179.97438 * 11 9 7 40 40 H 1.09004 * 109.47261 * 59.99842 * 11 9 7 41 41 H 1.09001 * 109.47326 * 295.00143 * 12 9 7 42 42 H 1.09000 * 109.46904 * 55.00495 * 12 9 7 43 43 H 1.09001 * 109.47273 * 300.00152 * 13 12 9 44 44 H 1.08998 * 109.47609 * 60.00099 * 13 12 9 45 45 H 1.08001 * 119.98682 * 359.97438 * 15 14 13 46 46 H 1.08004 * 120.00974 * 180.25118 * 16 15 14 47 47 H 1.07996 * 120.01464 * 179.97438 * 19 17 16 48 48 H 1.08007 * 119.98531 * 179.97438 * 20 19 17 49 49 H 0.97002 * 120.00000 * 94.99904 * 21 2 1 50 50 H 0.96999 * 119.99524 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5648 -0.6133 -1.3138 6 7 4.0531 -1.3044 -2.5097 7 6 5.3740 -1.3399 -2.7753 8 8 6.1583 -0.8001 -2.0242 9 6 5.8762 -2.0503 -4.0059 10 1 5.5882 -3.1006 -3.9620 11 6 5.2659 -1.4055 -5.2519 12 6 7.4011 -1.9425 -4.0702 13 6 7.9214 -2.7675 -5.2490 14 6 9.4233 -2.6619 -5.3121 15 6 10.0145 -1.6596 -6.0584 16 6 11.3917 -1.5583 -6.1124 17 6 12.1796 -2.4683 -5.4281 18 9 13.5261 -2.3741 -5.4853 19 6 11.5865 -3.4752 -4.6855 20 6 10.2089 -3.5705 -4.6277 21 7 2.0184 -0.6907 1.1962 22 6 2.1493 -0.0075 2.3757 23 1 1.8921 1.0402 2.4243 24 6 2.6115 -0.6621 3.5092 25 7 2.9245 -1.9392 3.4500 26 14 2.7894 0.2696 5.1184 27 1 2.3746 1.6818 4.9213 28 1 1.9284 -0.3591 6.1521 29 1 4.2062 0.2266 5.5613 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.6053 -0.2617 -2.1370 34 1 1.7516 -1.7715 -1.2057 35 1 3.9995 -1.0729 -0.4261 36 1 3.8531 0.4370 -1.3574 37 1 3.4258 -1.7364 -3.1103 38 1 4.1796 -1.4826 -5.2058 39 1 5.6295 -1.9191 -6.1419 40 1 5.5540 -0.3551 -5.2956 41 1 7.6864 -0.8989 -4.2031 42 1 7.8316 -2.3217 -3.1434 43 1 7.6361 -3.8111 -5.1161 44 1 7.4909 -2.3885 -6.1759 45 1 9.3997 -0.9530 -6.5963 46 1 11.8532 -0.7727 -6.6923 47 1 12.2001 -4.1857 -4.1518 48 1 9.7460 -4.3561 -4.0489 49 1 2.2491 -1.6318 1.1526 50 1 3.2478 -2.3964 4.2420 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317394684.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:07:16 Heat of formation + Delta-G solvation = -78.412944 kcal Electronic energy + Delta-G solvation = -27702.092569 eV Core-core repulsion = 23642.725817 eV Total energy + Delta-G solvation = -4059.366753 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -49.17020 -39.99303 -39.38051 -36.70742 -35.67550 -34.35599 -32.51202 -32.03742 -31.47294 -29.33865 -28.39602 -27.83581 -25.48504 -23.96896 -23.39919 -23.15882 -21.98595 -21.07071 -20.19546 -19.40397 -17.99287 -17.33742 -16.97147 -16.74462 -16.03138 -15.85310 -15.63483 -15.53034 -15.02546 -14.57207 -14.43115 -14.10760 -13.86151 -13.81194 -13.65132 -13.50723 -13.39598 -13.04169 -12.88353 -12.54347 -12.47794 -12.06289 -12.01177 -11.85416 -11.66867 -11.53624 -11.36214 -11.10743 -11.05100 -10.90469 -10.85212 -10.73177 -10.61705 -10.26612 -9.96305 -9.63850 -9.51766 -9.44946 -8.91244 -8.83987 -8.76622 -6.93723 -5.73992 -3.02468 0.80159 0.89137 2.81926 3.19581 3.38390 3.45896 3.51555 3.53676 3.95164 4.31330 4.34580 4.55506 4.61478 4.62450 4.68770 4.77999 4.88610 4.92032 5.15155 5.18033 5.25082 5.31917 5.37135 5.40583 5.53669 5.56516 5.57810 5.58648 5.70099 5.70366 5.77850 5.79604 5.88833 5.90113 5.96755 6.07697 6.15332 6.18604 6.23748 6.35799 6.40463 6.50397 6.56273 6.70027 6.73516 6.87100 7.06575 7.68843 7.73792 8.42265 8.44478 9.55918 10.12604 10.47119 11.48758 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.013464 B = 0.001862 C = 0.001688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2079.191782 B =15034.283039 C =16579.748051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.174 3.826 3 H 0.049 0.951 4 C -0.132 4.132 5 C 0.121 3.879 6 N -0.729 5.729 7 C 0.510 3.490 8 O -0.536 6.536 9 C -0.111 4.111 10 H 0.097 0.903 11 C -0.145 4.145 12 C -0.095 4.095 13 C -0.082 4.082 14 C -0.087 4.087 15 C -0.088 4.088 16 C -0.152 4.152 17 C 0.089 3.911 18 F -0.143 7.143 19 C -0.151 4.151 20 C -0.087 4.087 21 N -0.723 5.723 22 C -0.237 4.237 23 H 0.070 0.930 24 C -0.014 4.014 25 N -0.932 5.932 26 Si 0.905 3.095 27 H -0.281 1.281 28 H -0.293 1.293 29 H -0.292 1.292 30 H 0.054 0.946 31 H 0.035 0.965 32 H 0.045 0.955 33 H 0.061 0.939 34 H 0.065 0.935 35 H 0.084 0.916 36 H 0.062 0.938 37 H 0.395 0.605 38 H 0.060 0.940 39 H 0.068 0.932 40 H 0.061 0.939 41 H 0.071 0.929 42 H 0.075 0.925 43 H 0.075 0.925 44 H 0.077 0.923 45 H 0.132 0.868 46 H 0.134 0.866 47 H 0.135 0.865 48 H 0.133 0.867 49 H 0.383 0.617 50 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.795 -3.463 -25.755 27.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.063 3.937 3 H 0.067 0.933 4 C -0.170 4.170 5 C -0.002 4.002 6 N -0.380 5.380 7 C 0.295 3.705 8 O -0.413 6.413 9 C -0.133 4.133 10 H 0.115 0.885 11 C -0.203 4.203 12 C -0.133 4.133 13 C -0.119 4.119 14 C -0.087 4.087 15 C -0.106 4.106 16 C -0.171 4.171 17 C 0.070 3.930 18 F -0.121 7.121 19 C -0.170 4.170 20 C -0.105 4.105 21 N -0.365 5.365 22 C -0.368 4.368 23 H 0.088 0.912 24 C -0.210 4.210 25 N -0.581 5.581 26 Si 0.736 3.264 27 H -0.206 1.206 28 H -0.220 1.220 29 H -0.219 1.219 30 H 0.073 0.927 31 H 0.054 0.946 32 H 0.065 0.935 33 H 0.080 0.920 34 H 0.083 0.917 35 H 0.102 0.898 36 H 0.080 0.920 37 H 0.228 0.772 38 H 0.079 0.921 39 H 0.087 0.913 40 H 0.080 0.920 41 H 0.090 0.910 42 H 0.094 0.906 43 H 0.094 0.906 44 H 0.096 0.904 45 H 0.150 0.850 46 H 0.152 0.848 47 H 0.152 0.848 48 H 0.151 0.849 49 H 0.217 0.783 50 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 10.427 -2.919 -25.048 27.288 hybrid contribution 0.084 -0.076 0.759 0.767 sum 10.511 -2.995 -24.289 26.635 Atomic orbital electron populations 1.22423 0.99156 1.00804 0.99941 1.20159 0.91862 0.95586 0.86074 0.93325 1.22050 0.93998 1.01720 0.99262 1.21443 0.94331 0.97125 0.87253 1.46139 1.07314 1.57055 1.27484 1.20564 0.82425 0.80587 0.86879 1.90738 1.55263 1.45581 1.49698 1.21334 0.97182 1.01014 0.93738 0.88519 1.21835 1.00746 1.01346 0.96364 1.21390 0.92506 1.01125 0.98309 1.20715 0.90209 1.01370 0.99631 1.19981 0.96254 0.95379 0.97132 1.20935 0.93615 0.97686 0.98387 1.21149 0.94310 0.99916 1.01702 1.17744 0.76934 0.97839 1.00479 1.91498 1.29638 1.95892 1.95108 1.21169 0.95929 0.98953 1.00912 1.20979 0.92401 0.98947 0.98180 1.42454 1.78071 1.10638 1.05357 1.19269 1.36344 0.93862 0.87311 0.91159 1.24732 1.02217 0.95977 0.98069 1.69666 1.51025 1.08660 1.28741 0.86145 0.77320 0.78796 0.84111 1.20588 1.21984 1.21878 0.92736 0.94601 0.93541 0.92008 0.91663 0.89815 0.91970 0.77164 0.92109 0.91343 0.92017 0.90992 0.90647 0.90598 0.90423 0.84989 0.84830 0.84758 0.84863 0.78310 0.93626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.82 9.49 37.16 0.35 -2.46 16 2 C 0.17 3.30 2.89 -67.93 -0.20 3.10 16 3 H 0.05 0.96 8.08 -51.93 -0.42 0.54 16 4 C -0.13 -1.97 4.87 -26.73 -0.13 -2.10 16 5 C 0.12 1.99 5.56 -4.04 -0.02 1.97 16 6 N -0.73 -9.36 5.45 -60.29 -0.33 -9.68 16 7 C 0.51 7.10 7.15 -10.98 -0.08 7.02 16 8 O -0.54 -10.20 15.92 5.56 0.09 -10.11 16 9 C -0.11 -1.00 2.72 -91.77 -0.25 -1.25 16 10 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 11 C -0.15 -0.95 8.85 37.16 0.33 -0.62 16 12 C -0.10 -0.89 4.01 -26.73 -0.11 -0.99 16 13 C -0.08 -0.54 5.10 -27.89 -0.14 -0.68 16 14 C -0.09 -0.68 5.13 -104.62 -0.54 -1.22 16 15 C -0.09 -0.66 9.70 -39.59 -0.38 -1.05 16 16 C -0.15 -1.25 10.03 -39.51 -0.40 -1.64 16 17 C 0.09 0.84 7.30 -39.42 -0.29 0.55 16 18 F -0.14 -1.48 17.27 2.25 0.04 -1.44 16 19 C -0.15 -1.29 10.03 -39.51 -0.40 -1.68 16 20 C -0.09 -0.70 9.70 -39.59 -0.38 -1.08 16 21 N -0.72 -17.66 4.57 -53.42 -0.24 -17.91 16 22 C -0.24 -6.54 9.93 -15.06 -0.15 -6.69 16 23 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 24 C -0.01 -0.41 5.50 -17.43 -0.10 -0.50 16 25 N -0.93 -28.33 13.06 55.49 0.72 -27.60 16 26 Si 0.90 22.73 29.55 -169.99 -5.02 17.71 16 27 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 28 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 29 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 30 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 31 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 32 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 35 H 0.08 1.74 7.75 -51.93 -0.40 1.34 16 36 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 37 H 0.39 3.70 7.89 -40.82 -0.32 3.38 16 38 H 0.06 0.35 7.57 -51.93 -0.39 -0.05 16 39 H 0.07 0.32 6.56 -51.93 -0.34 -0.02 16 40 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.07 0.86 7.96 -51.93 -0.41 0.45 16 43 H 0.08 0.43 8.08 -51.93 -0.42 0.01 16 44 H 0.08 0.40 6.51 -51.93 -0.34 0.06 16 45 H 0.13 0.73 8.06 -52.49 -0.42 0.31 16 46 H 0.13 0.87 8.06 -52.48 -0.42 0.44 16 47 H 0.13 0.94 8.06 -52.49 -0.42 0.52 16 48 H 0.13 0.86 8.06 -52.48 -0.42 0.43 16 49 H 0.38 9.99 7.80 -40.82 -0.32 9.67 16 50 H 0.25 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 414.95 15.07 6.25 6.25 Total: -1.00 -33.77 414.95 -9.78 -43.54 By element: Atomic # 1 Polarization: 16.97 SS G_CDS: -8.41 Total: 8.56 kcal Atomic # 6 Polarization: -6.45 SS G_CDS: -2.88 Total: -9.32 kcal Atomic # 7 Polarization: -55.34 SS G_CDS: 0.15 Total: -55.19 kcal Atomic # 8 Polarization: -10.20 SS G_CDS: 0.09 Total: -10.11 kcal Atomic # 9 Polarization: -1.48 SS G_CDS: 0.04 Total: -1.44 kcal Atomic # 14 Polarization: 22.73 SS G_CDS: -5.02 Total: 17.71 kcal Total LS contribution 6.25 Total: 6.25 kcal Total: -33.77 -9.78 -43.54 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317394684.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.868 kcal (2) G-P(sol) polarization free energy of solvation -33.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.545 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds