Wall clock time and date at job start Tue Mar 31 2020 20:07:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.47298 * 2 1 4 4 C 1.53002 * 109.46954 * 240.00331 * 2 1 3 5 5 C 1.52996 * 109.47340 * 175.00279 * 4 2 1 6 6 N 1.46500 * 109.47364 * 179.97438 * 5 4 2 7 7 C 1.34777 * 119.99750 * 179.97438 * 6 5 4 8 8 O 1.21275 * 120.00643 * 0.02562 * 7 6 5 9 9 C 1.50708 * 119.99487 * 180.02562 * 7 6 5 10 10 H 1.08996 * 109.46993 * 299.99601 * 9 7 6 11 11 C 1.52997 * 109.47141 * 60.00428 * 9 7 6 12 12 C 1.53006 * 109.46735 * 180.02562 * 9 7 6 13 13 C 1.52999 * 109.46811 * 175.00023 * 12 9 7 14 14 C 1.50696 * 109.47144 * 180.02562 * 13 12 9 15 15 C 1.38240 * 119.97442 * 269.72676 * 14 13 12 16 16 C 1.38203 * 120.02539 * 179.72162 * 15 14 13 17 17 C 1.38459 * 119.97185 * 0.57232 * 16 15 14 18 18 F 1.35103 * 120.02421 * 179.67843 * 17 16 15 19 19 C 1.38452 * 119.95269 * 359.70486 * 17 16 15 20 20 C 1.38205 * 119.97073 * 359.97438 * 19 17 16 21 21 N 1.46503 * 109.47299 * 120.00243 * 2 1 3 22 22 C 1.36935 * 119.99833 * 274.99489 * 21 2 1 23 23 H 1.07998 * 119.99936 * 0.02562 * 22 21 2 24 24 C 1.38816 * 119.99860 * 179.97438 * 22 21 2 25 25 N 1.31621 * 119.99681 * 0.02562 * 24 22 21 26 26 Si 1.86797 * 119.99753 * 180.02562 * 24 22 21 27 27 H 1.48494 * 109.47581 * 0.02562 * 26 24 22 28 28 H 1.48495 * 109.46929 * 120.00751 * 26 24 22 29 29 H 1.48503 * 109.46784 * 240.00272 * 26 24 22 30 30 H 1.09001 * 109.46962 * 299.99474 * 1 2 3 31 31 H 1.08999 * 109.47318 * 59.99989 * 1 2 3 32 32 H 1.09001 * 109.46817 * 179.97438 * 1 2 3 33 33 H 1.08992 * 109.47461 * 54.99663 * 4 2 1 34 34 H 1.09004 * 109.46930 * 294.99882 * 4 2 1 35 35 H 1.09004 * 109.47694 * 59.99593 * 5 4 2 36 36 H 1.09004 * 109.46785 * 299.99692 * 5 4 2 37 37 H 0.96996 * 119.99986 * 359.97438 * 6 5 4 38 38 H 1.09002 * 109.47153 * 299.99670 * 11 9 7 39 39 H 1.09001 * 109.46832 * 179.97438 * 11 9 7 40 40 H 1.09004 * 109.47261 * 59.99842 * 11 9 7 41 41 H 1.09001 * 109.47326 * 295.00143 * 12 9 7 42 42 H 1.09000 * 109.46904 * 55.00495 * 12 9 7 43 43 H 1.09001 * 109.47273 * 300.00152 * 13 12 9 44 44 H 1.08998 * 109.47609 * 60.00099 * 13 12 9 45 45 H 1.08001 * 119.98682 * 359.97438 * 15 14 13 46 46 H 1.08004 * 120.00974 * 180.25118 * 16 15 14 47 47 H 1.07996 * 120.01464 * 179.97438 * 19 17 16 48 48 H 1.08007 * 119.98531 * 179.97438 * 20 19 17 49 49 H 0.97002 * 120.00000 * 94.99904 * 21 2 1 50 50 H 0.96999 * 119.99524 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5648 -0.6133 -1.3138 6 7 4.0531 -1.3044 -2.5097 7 6 5.3740 -1.3399 -2.7753 8 8 6.1583 -0.8001 -2.0242 9 6 5.8762 -2.0503 -4.0059 10 1 5.5882 -3.1006 -3.9620 11 6 5.2659 -1.4055 -5.2519 12 6 7.4011 -1.9425 -4.0702 13 6 7.9214 -2.7675 -5.2490 14 6 9.4233 -2.6619 -5.3121 15 6 10.0145 -1.6596 -6.0584 16 6 11.3917 -1.5583 -6.1124 17 6 12.1796 -2.4683 -5.4281 18 9 13.5261 -2.3741 -5.4853 19 6 11.5865 -3.4752 -4.6855 20 6 10.2089 -3.5705 -4.6277 21 7 2.0184 -0.6907 1.1962 22 6 2.1493 -0.0075 2.3757 23 1 1.8921 1.0402 2.4243 24 6 2.6115 -0.6621 3.5092 25 7 2.9245 -1.9392 3.4500 26 14 2.7894 0.2696 5.1184 27 1 2.3746 1.6818 4.9213 28 1 1.9284 -0.3591 6.1521 29 1 4.2062 0.2266 5.5613 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.6053 -0.2617 -2.1370 34 1 1.7516 -1.7715 -1.2057 35 1 3.9995 -1.0729 -0.4261 36 1 3.8531 0.4370 -1.3574 37 1 3.4258 -1.7364 -3.1103 38 1 4.1796 -1.4826 -5.2058 39 1 5.6295 -1.9191 -6.1419 40 1 5.5540 -0.3551 -5.2956 41 1 7.6864 -0.8989 -4.2031 42 1 7.8316 -2.3217 -3.1434 43 1 7.6361 -3.8111 -5.1161 44 1 7.4909 -2.3885 -6.1759 45 1 9.3997 -0.9530 -6.5963 46 1 11.8532 -0.7727 -6.6923 47 1 12.2001 -4.1857 -4.1518 48 1 9.7460 -4.3561 -4.0489 49 1 2.2491 -1.6318 1.1526 50 1 3.2478 -2.3964 4.2420 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317394684.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:07:15 Heat of formation + Delta-G solvation = -98.787922 kcal Electronic energy + Delta-G solvation = -27702.976094 eV Core-core repulsion = 23642.725817 eV Total energy + Delta-G solvation = -4060.250278 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -49.90484 -40.99982 -40.08864 -38.19043 -36.51490 -35.80870 -34.15745 -32.96448 -32.06633 -31.00062 -29.66954 -28.70117 -26.22723 -25.79336 -24.40497 -23.99635 -22.99084 -21.90162 -21.48003 -20.55924 -19.27474 -18.65705 -18.03925 -17.39822 -17.09433 -16.90162 -16.60258 -16.47409 -16.32588 -15.88860 -15.37546 -15.33803 -15.14318 -14.79869 -14.55280 -14.41681 -14.35745 -14.14418 -13.99347 -13.56041 -13.53819 -13.29809 -13.22212 -12.86438 -12.64021 -12.56323 -12.47117 -12.37929 -12.24674 -12.20919 -12.09391 -11.96837 -11.72309 -11.61823 -11.58432 -11.49334 -10.97011 -10.67482 -10.05292 -10.03471 -9.48702 -8.97620 -7.93473 -5.19762 0.15990 0.29140 1.44722 1.46187 1.55186 1.72307 2.26735 2.56288 2.63080 3.31341 3.40897 3.68281 3.77785 3.78852 3.92702 3.96986 4.02411 4.04401 4.17262 4.23894 4.31805 4.36834 4.39140 4.53740 4.57791 4.65430 4.67812 4.78941 4.82289 4.90635 4.96274 5.02894 5.05180 5.06673 5.11179 5.12383 5.16322 5.18201 5.25359 5.29755 5.40017 5.41178 5.47165 5.53568 5.54622 5.62810 5.65104 5.96384 6.30092 6.65889 7.35798 7.37164 8.14371 8.35269 9.30304 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.013464 B = 0.001862 C = 0.001688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2079.191782 B =15034.283039 C =16579.748051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.162 3.838 3 H 0.040 0.960 4 C -0.114 4.114 5 C 0.132 3.868 6 N -0.713 5.713 7 C 0.501 3.499 8 O -0.597 6.597 9 C -0.100 4.100 10 H 0.123 0.877 11 C -0.142 4.142 12 C -0.092 4.092 13 C -0.072 4.072 14 C -0.094 4.094 15 C -0.091 4.091 16 C -0.159 4.159 17 C 0.064 3.936 18 F -0.154 7.154 19 C -0.161 4.161 20 C -0.097 4.097 21 N -0.735 5.735 22 C -0.231 4.231 23 H 0.074 0.926 24 C -0.080 4.080 25 N -0.970 5.970 26 Si 0.966 3.034 27 H -0.266 1.266 28 H -0.293 1.293 29 H -0.299 1.299 30 H 0.031 0.969 31 H 0.076 0.924 32 H 0.045 0.955 33 H 0.106 0.894 34 H 0.072 0.928 35 H 0.031 0.969 36 H 0.046 0.954 37 H 0.417 0.583 38 H 0.075 0.925 39 H 0.097 0.903 40 H 0.050 0.950 41 H 0.054 0.946 42 H 0.045 0.955 43 H 0.092 0.908 44 H 0.102 0.898 45 H 0.155 0.845 46 H 0.147 0.853 47 H 0.143 0.857 48 H 0.147 0.853 49 H 0.372 0.628 50 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.920 -3.353 -28.676 29.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.054 3.946 3 H 0.059 0.941 4 C -0.152 4.152 5 C 0.008 3.992 6 N -0.366 5.366 7 C 0.289 3.711 8 O -0.478 6.478 9 C -0.121 4.121 10 H 0.141 0.859 11 C -0.199 4.199 12 C -0.130 4.130 13 C -0.108 4.108 14 C -0.094 4.094 15 C -0.109 4.109 16 C -0.177 4.177 17 C 0.045 3.955 18 F -0.133 7.133 19 C -0.180 4.180 20 C -0.114 4.114 21 N -0.375 5.375 22 C -0.363 4.363 23 H 0.092 0.908 24 C -0.272 4.272 25 N -0.621 5.621 26 Si 0.796 3.204 27 H -0.190 1.190 28 H -0.220 1.220 29 H -0.227 1.227 30 H 0.050 0.950 31 H 0.095 0.905 32 H 0.064 0.936 33 H 0.124 0.876 34 H 0.091 0.909 35 H 0.050 0.950 36 H 0.064 0.936 37 H 0.254 0.746 38 H 0.093 0.907 39 H 0.116 0.884 40 H 0.069 0.931 41 H 0.073 0.927 42 H 0.064 0.936 43 H 0.110 0.890 44 H 0.120 0.880 45 H 0.173 0.827 46 H 0.165 0.835 47 H 0.160 0.840 48 H 0.164 0.836 49 H 0.203 0.797 50 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 8.493 -2.791 -28.039 29.429 hybrid contribution 0.651 -0.053 1.602 1.731 sum 9.144 -2.844 -26.436 28.117 Atomic orbital electron populations 1.22254 0.97043 1.01074 1.00853 1.20484 0.93221 0.95154 0.85788 0.94148 1.21898 0.92470 1.02052 0.98813 1.21052 0.95353 0.95944 0.86871 1.45942 1.07719 1.56424 1.26485 1.21623 0.82032 0.79708 0.87717 1.90715 1.56744 1.48254 1.52056 1.21373 0.96725 1.01840 0.92151 0.85924 1.21870 1.01574 1.00748 0.95707 1.21315 0.92891 1.00522 0.98276 1.20687 0.89120 1.01857 0.99182 1.20244 0.97143 0.95232 0.96819 1.21247 0.93530 0.97867 0.98248 1.21397 0.94787 0.99959 1.01575 1.18053 0.76706 0.98974 1.01762 1.91462 1.30442 1.96046 1.95310 1.21366 0.96532 0.99103 1.01010 1.21235 0.92280 0.99583 0.98346 1.42653 1.78351 1.10227 1.06302 1.19639 1.34142 0.94068 0.88454 0.90834 1.25495 1.03451 0.96916 1.01352 1.69812 1.53046 1.10127 1.29120 0.85171 0.76564 0.78334 0.80359 1.19042 1.22019 1.22651 0.94970 0.90522 0.93565 0.87581 0.90929 0.95034 0.93554 0.74589 0.90653 0.88438 0.93117 0.92682 0.93649 0.88991 0.87954 0.82741 0.83499 0.83961 0.83573 0.79654 0.94306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.90 9.49 71.98 0.68 -4.22 16 2 C 0.16 5.97 2.89 44.99 0.13 6.10 16 3 H 0.04 1.56 8.08 -2.38 -0.02 1.54 16 4 C -0.11 -3.15 4.87 30.59 0.15 -3.00 16 5 C 0.13 4.34 5.56 86.38 0.48 4.82 16 6 N -0.71 -17.31 5.45 -463.05 -2.52 -19.83 16 7 C 0.50 13.73 7.15 87.66 0.63 14.36 16 8 O -0.60 -23.72 15.92 -3.01 -0.05 -23.77 16 9 C -0.10 -1.55 2.72 -11.54 -0.03 -1.59 16 10 H 0.12 1.34 8.14 -2.39 -0.02 1.32 16 11 C -0.14 -1.29 8.85 71.98 0.64 -0.66 16 12 C -0.09 -1.61 4.01 30.60 0.12 -1.48 16 13 C -0.07 -0.73 5.10 29.85 0.15 -0.58 16 14 C -0.09 -1.33 5.13 -19.86 -0.10 -1.43 16 15 C -0.09 -1.23 9.70 22.26 0.22 -1.02 16 16 C -0.16 -2.51 10.03 22.31 0.22 -2.28 16 17 C 0.06 1.22 7.30 22.37 0.16 1.39 16 18 F -0.15 -3.29 17.27 44.97 0.78 -2.52 16 19 C -0.16 -2.78 10.03 22.31 0.22 -2.56 16 20 C -0.10 -1.48 9.70 22.26 0.22 -1.26 16 21 N -0.73 -36.36 4.57 -322.93 -1.48 -37.84 16 22 C -0.23 -12.93 9.93 84.03 0.83 -12.09 16 23 H 0.07 3.99 7.83 -2.91 -0.02 3.96 16 24 C -0.08 -4.71 5.50 84.86 0.47 -4.25 16 25 N -0.97 -60.65 13.06 21.65 0.28 -60.37 16 26 Si 0.97 47.62 29.55 68.60 2.03 49.65 16 27 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 28 H -0.29 -14.33 7.11 99.48 0.71 -13.63 16 29 H -0.30 -14.96 7.11 99.48 0.71 -14.25 16 30 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 31 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 32 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 33 H 0.11 2.07 8.14 -2.39 -0.02 2.06 16 34 H 0.07 1.95 8.14 -2.38 -0.02 1.93 16 35 H 0.03 1.37 7.75 -2.39 -0.02 1.35 16 36 H 0.05 1.65 8.14 -2.38 -0.02 1.63 16 37 H 0.42 6.42 7.89 -92.71 -0.73 5.68 16 38 H 0.07 0.50 7.57 -2.39 -0.02 0.48 16 39 H 0.10 0.39 6.56 -2.39 -0.02 0.37 16 40 H 0.05 0.61 8.14 -2.38 -0.02 0.59 16 41 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 42 H 0.04 1.06 7.96 -2.39 -0.02 1.04 16 43 H 0.09 0.69 8.08 -2.39 -0.02 0.68 16 44 H 0.10 0.58 6.51 -2.39 -0.02 0.56 16 45 H 0.15 1.31 8.06 -2.91 -0.02 1.28 16 46 H 0.15 1.79 8.06 -2.91 -0.02 1.77 16 47 H 0.14 2.05 8.06 -2.91 -0.02 2.03 16 48 H 0.15 1.75 8.06 -2.91 -0.02 1.72 16 49 H 0.37 19.89 7.80 -92.71 -0.72 19.17 16 50 H 0.25 15.12 8.31 -92.71 -0.77 14.35 16 Total: -1.00 -78.54 414.95 3.71 -74.83 By element: Atomic # 1 Polarization: 30.11 SS G_CDS: -0.52 Total: 29.59 kcal Atomic # 6 Polarization: -14.94 SS G_CDS: 5.19 Total: -9.75 kcal Atomic # 7 Polarization: -114.32 SS G_CDS: -3.72 Total: -118.04 kcal Atomic # 8 Polarization: -23.72 SS G_CDS: -0.05 Total: -23.77 kcal Atomic # 9 Polarization: -3.29 SS G_CDS: 0.78 Total: -2.52 kcal Atomic # 14 Polarization: 47.62 SS G_CDS: 2.03 Total: 49.65 kcal Total: -78.54 3.71 -74.83 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317394684.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.957 kcal (2) G-P(sol) polarization free energy of solvation -78.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.831 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds