Wall clock time and date at job start Tue Mar 31 2020 20:07:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 109.46734 * 2 1 4 4 C 1.52992 * 109.47261 * 239.99739 * 2 1 3 5 5 C 1.53001 * 109.47185 * 174.99770 * 4 2 1 6 6 N 1.46501 * 109.47201 * 179.97438 * 5 4 2 7 7 C 1.34774 * 119.99820 * 180.02562 * 6 5 4 8 8 O 1.21281 * 120.00103 * 0.02562 * 7 6 5 9 9 C 1.50697 * 119.99937 * 180.02562 * 7 6 5 10 10 H 1.08998 * 109.47561 * 59.99773 * 9 7 6 11 11 C 1.53009 * 109.47057 * 300.00037 * 9 7 6 12 12 C 1.52993 * 109.47371 * 180.02562 * 9 7 6 13 13 C 1.53001 * 109.47523 * 184.99839 * 12 9 7 14 14 C 1.50696 * 109.47556 * 179.97438 * 13 12 9 15 15 C 1.38221 * 120.01004 * 99.99595 * 14 13 12 16 16 C 1.38229 * 120.02594 * 180.02562 * 15 14 13 17 17 C 1.38263 * 120.04920 * 359.97438 * 16 15 14 18 18 C 1.38175 * 120.02891 * 0.02562 * 17 16 15 19 19 C 1.38435 * 120.01469 * 280.00255 * 14 13 12 20 20 F 1.35093 * 120.02480 * 0.02562 * 19 14 13 21 21 N 1.46497 * 109.46765 * 119.99140 * 2 1 3 22 22 C 1.36937 * 120.00419 * 274.99907 * 21 2 1 23 23 H 1.08001 * 119.99955 * 0.02562 * 22 21 2 24 24 C 1.38819 * 120.00059 * 180.02562 * 22 21 2 25 25 N 1.31620 * 119.99702 * 0.02562 * 24 22 21 26 26 Si 1.86794 * 119.99755 * 180.02562 * 24 22 21 27 27 H 1.48505 * 109.47383 * 0.02562 * 26 24 22 28 28 H 1.48505 * 109.47146 * 120.00254 * 26 24 22 29 29 H 1.48495 * 109.47255 * 240.00360 * 26 24 22 30 30 H 1.09004 * 109.47083 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47417 * 299.99820 * 1 2 3 32 32 H 1.08995 * 109.47202 * 60.00799 * 1 2 3 33 33 H 1.08998 * 109.47663 * 54.99650 * 4 2 1 34 34 H 1.08998 * 109.46848 * 294.99626 * 4 2 1 35 35 H 1.09006 * 109.46577 * 59.99969 * 5 4 2 36 36 H 1.09001 * 109.47063 * 300.00236 * 5 4 2 37 37 H 0.96998 * 119.99976 * 359.97438 * 6 5 4 38 38 H 1.09006 * 109.46924 * 299.99945 * 11 9 7 39 39 H 1.08997 * 109.47184 * 59.99679 * 11 9 7 40 40 H 1.08996 * 109.47403 * 180.02562 * 11 9 7 41 41 H 1.09001 * 109.47398 * 64.99807 * 12 9 7 42 42 H 1.09001 * 109.47279 * 304.99982 * 12 9 7 43 43 H 1.09001 * 109.46810 * 59.99608 * 13 12 9 44 44 H 1.09001 * 109.46960 * 300.00339 * 13 12 9 45 45 H 1.08002 * 119.98827 * 0.02562 * 15 14 13 46 46 H 1.08000 * 119.97486 * 180.02562 * 16 15 14 47 47 H 1.07998 * 119.99008 * 180.02562 * 17 16 15 48 48 H 1.08001 * 120.01835 * 179.74986 * 18 17 16 49 49 H 0.97007 * 120.00043 * 95.00844 * 21 2 1 50 50 H 0.97002 * 119.99340 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 3.5649 -0.6132 -1.3136 6 7 4.0533 -1.3044 -2.5094 7 6 5.3742 -1.3407 -2.7745 8 8 6.1586 -0.8015 -2.0228 9 6 5.8766 -2.0512 -4.0048 10 1 5.4424 -1.5915 -4.8927 11 6 5.4712 -3.5253 -3.9438 12 6 7.4015 -1.9443 -4.0685 13 6 7.9014 -2.5562 -5.3788 14 6 9.4033 -2.4504 -5.4419 15 6 10.1871 -3.5452 -5.1295 16 6 11.5649 -3.4484 -5.1867 17 6 12.1604 -2.2568 -5.5569 18 6 11.3789 -1.1610 -5.8697 19 6 9.9985 -1.2568 -5.8125 20 9 9.2334 -0.1860 -6.1174 21 7 2.0183 -0.6904 1.1963 22 6 2.1491 -0.0072 2.3758 23 1 1.8919 1.0406 2.4243 24 6 2.6122 -0.6614 3.5092 25 7 2.9261 -1.9382 3.4499 26 14 2.7899 0.2705 5.1183 27 1 2.3739 1.6824 4.9213 28 1 1.9297 -0.3588 6.1524 29 1 4.2068 0.2286 5.5607 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3633 0.5137 -0.8900 33 1 1.6054 -0.2619 -2.1369 34 1 1.7517 -1.7715 -1.2054 35 1 3.9994 -1.0727 -0.4258 36 1 3.8532 0.4370 -1.3573 37 1 3.4261 -1.7366 -3.1100 38 1 5.9055 -3.9851 -3.0559 39 1 4.3849 -3.6018 -3.8981 40 1 5.8350 -4.0393 -4.8334 41 1 7.8389 -2.4812 -3.2268 42 1 7.6945 -0.8955 -4.0223 43 1 7.4640 -2.0193 -6.2206 44 1 7.6083 -3.6050 -5.4251 45 1 9.7230 -4.4766 -4.8405 46 1 12.1765 -4.3044 -4.9428 47 1 13.2369 -2.1823 -5.6017 48 1 11.8443 -0.2291 -6.1549 49 1 2.2491 -1.6316 1.1528 50 1 3.2501 -2.3952 4.2418 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317406520.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:07:38 Heat of formation + Delta-G solvation = -97.822269 kcal Electronic energy + Delta-G solvation = -28130.950778 eV Core-core repulsion = 24070.742374 eV Total energy + Delta-G solvation = -4060.208404 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -49.89254 -41.03032 -39.97671 -38.21535 -36.68562 -35.84122 -34.18839 -33.28247 -31.45516 -31.03162 -29.76780 -28.91775 -26.34130 -25.83795 -24.50376 -23.70491 -23.06237 -21.97056 -21.51956 -20.63038 -19.27705 -18.58336 -18.00941 -17.45580 -17.14211 -16.91047 -16.64979 -16.51084 -16.46168 -15.86242 -15.39816 -15.28768 -15.22641 -14.97268 -14.55348 -14.49905 -14.17088 -14.10915 -13.79936 -13.57040 -13.54019 -13.30214 -13.24290 -12.86734 -12.76968 -12.65892 -12.60102 -12.35727 -12.24734 -12.23377 -12.12659 -12.09645 -11.70741 -11.63746 -11.60702 -11.57699 -10.97818 -10.72553 -10.07576 -9.88351 -9.57354 -8.98363 -7.93934 -5.20347 0.21134 0.28191 1.44187 1.45782 1.54782 1.66482 2.22454 2.55834 2.66580 3.34618 3.40342 3.57428 3.70597 3.80175 3.91210 3.96630 4.00094 4.01808 4.15830 4.21829 4.32997 4.36275 4.41212 4.46069 4.49937 4.56736 4.66275 4.71494 4.76909 4.88256 4.95747 4.96600 4.97754 5.02578 5.05374 5.11206 5.13802 5.22829 5.27399 5.31211 5.37589 5.39519 5.46879 5.49436 5.51299 5.53473 5.61555 5.99179 6.29571 6.61129 7.32019 7.35317 8.13477 8.34696 9.29892 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.014445 B = 0.001984 C = 0.001862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1937.893520 B =14110.510243 C =15030.694719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.162 3.838 3 H 0.040 0.960 4 C -0.114 4.114 5 C 0.132 3.868 6 N -0.712 5.712 7 C 0.502 3.498 8 O -0.597 6.597 9 C -0.098 4.098 10 H 0.126 0.874 11 C -0.143 4.143 12 C -0.090 4.090 13 C -0.072 4.072 14 C -0.128 4.128 15 C -0.096 4.096 16 C -0.130 4.130 17 C -0.099 4.099 18 C -0.166 4.166 19 C 0.068 3.932 20 F -0.153 7.153 21 N -0.734 5.734 22 C -0.231 4.231 23 H 0.073 0.927 24 C -0.080 4.080 25 N -0.970 5.970 26 Si 0.966 3.034 27 H -0.266 1.266 28 H -0.292 1.292 29 H -0.299 1.299 30 H 0.046 0.954 31 H 0.032 0.968 32 H 0.076 0.924 33 H 0.105 0.895 34 H 0.073 0.927 35 H 0.032 0.968 36 H 0.045 0.955 37 H 0.417 0.583 38 H 0.045 0.955 39 H 0.076 0.924 40 H 0.098 0.902 41 H 0.053 0.947 42 H 0.040 0.960 43 H 0.081 0.919 44 H 0.107 0.893 45 H 0.153 0.847 46 H 0.155 0.845 47 H 0.156 0.844 48 H 0.142 0.858 49 H 0.372 0.628 50 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.476 -5.767 -27.677 30.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.054 3.946 3 H 0.058 0.942 4 C -0.152 4.152 5 C 0.008 3.992 6 N -0.365 5.365 7 C 0.290 3.710 8 O -0.477 6.477 9 C -0.119 4.119 10 H 0.144 0.856 11 C -0.200 4.200 12 C -0.128 4.128 13 C -0.109 4.109 14 C -0.129 4.129 15 C -0.114 4.114 16 C -0.148 4.148 17 C -0.117 4.117 18 C -0.185 4.185 19 C 0.049 3.951 20 F -0.131 7.131 21 N -0.375 5.375 22 C -0.364 4.364 23 H 0.091 0.909 24 C -0.272 4.272 25 N -0.621 5.621 26 Si 0.796 3.204 27 H -0.191 1.191 28 H -0.219 1.219 29 H -0.226 1.226 30 H 0.065 0.935 31 H 0.051 0.949 32 H 0.094 0.906 33 H 0.124 0.876 34 H 0.092 0.908 35 H 0.051 0.949 36 H 0.064 0.936 37 H 0.254 0.746 38 H 0.064 0.936 39 H 0.095 0.905 40 H 0.117 0.883 41 H 0.072 0.928 42 H 0.059 0.941 43 H 0.099 0.901 44 H 0.126 0.874 45 H 0.171 0.829 46 H 0.173 0.827 47 H 0.174 0.826 48 H 0.160 0.840 49 H 0.204 0.796 50 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 11.960 -5.164 -27.047 30.021 hybrid contribution -0.047 0.502 1.339 1.431 sum 11.913 -4.662 -25.708 28.715 Atomic orbital electron populations 1.22252 0.96975 1.01110 1.00858 1.20474 0.93267 0.95121 0.85762 0.94203 1.21901 0.92339 1.02136 0.98858 1.21071 0.95453 0.95897 0.86810 1.45924 1.07549 1.56367 1.26616 1.21541 0.82147 0.79466 0.87853 1.90711 1.56801 1.48262 1.51946 1.21339 0.96762 0.98488 0.95294 0.85640 1.21881 1.02748 0.91796 1.03616 1.21262 0.93454 1.00457 0.97616 1.20612 0.89389 1.03846 0.97092 1.20190 0.97733 0.92933 1.02009 1.21335 0.94041 0.98274 0.97729 1.21622 0.94936 0.98954 0.99240 1.21377 1.01329 0.91846 0.97168 1.21429 0.91480 1.01773 1.03770 1.18007 0.89670 0.84127 1.03344 1.91448 1.75995 1.54739 1.90952 1.42647 1.78366 1.10227 1.06281 1.19638 1.34194 0.94066 0.88460 0.90872 1.25498 1.03391 0.96929 1.01368 1.69815 1.52986 1.10161 1.29144 0.85165 0.76587 0.78310 0.80329 1.19086 1.21933 1.22621 0.93508 0.94912 0.90565 0.87650 0.90807 0.94898 0.93615 0.74557 0.93571 0.90534 0.88297 0.92845 0.94082 0.90065 0.87424 0.82945 0.82737 0.82592 0.83989 0.79640 0.94281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.00 9.49 71.98 0.68 -4.32 16 2 C 0.16 6.13 2.89 44.99 0.13 6.26 16 3 H 0.04 1.58 8.08 -2.39 -0.02 1.56 16 4 C -0.11 -3.29 4.87 30.59 0.15 -3.14 16 5 C 0.13 4.53 5.56 86.38 0.48 5.01 16 6 N -0.71 -18.69 5.45 -463.05 -2.52 -21.22 16 7 C 0.50 15.10 7.15 87.66 0.63 15.73 16 8 O -0.60 -25.26 15.92 -3.03 -0.05 -25.31 16 9 C -0.10 -1.87 2.73 -11.54 -0.03 -1.90 16 10 H 0.13 1.69 8.14 -2.39 -0.02 1.68 16 11 C -0.14 -1.95 8.84 71.99 0.64 -1.31 16 12 C -0.09 -1.99 4.01 30.59 0.12 -1.86 16 13 C -0.07 -1.11 4.82 29.85 0.14 -0.97 16 14 C -0.13 -2.30 5.14 -19.82 -0.10 -2.40 16 15 C -0.10 -1.34 9.67 22.26 0.22 -1.12 16 16 C -0.13 -1.54 10.04 22.27 0.22 -1.32 16 17 C -0.10 -1.26 10.04 22.26 0.22 -1.03 16 18 C -0.17 -2.80 10.03 22.31 0.22 -2.58 16 19 C 0.07 1.41 7.24 22.38 0.16 1.57 16 20 F -0.15 -3.71 16.66 44.97 0.75 -2.96 16 21 N -0.73 -36.87 4.57 -322.95 -1.48 -38.35 16 22 C -0.23 -13.10 9.93 84.04 0.83 -12.26 16 23 H 0.07 4.01 7.83 -2.91 -0.02 3.99 16 24 C -0.08 -4.73 5.50 84.86 0.47 -4.27 16 25 N -0.97 -61.06 13.06 21.65 0.28 -60.77 16 26 Si 0.97 47.97 29.55 68.60 2.03 50.00 16 27 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 28 H -0.29 -14.36 7.11 99.48 0.71 -13.65 16 29 H -0.30 -15.03 7.11 99.48 0.71 -14.33 16 30 H 0.05 1.53 8.14 -2.38 -0.02 1.51 16 31 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 32 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 33 H 0.11 2.20 8.14 -2.39 -0.02 2.18 16 34 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 35 H 0.03 1.47 7.75 -2.38 -0.02 1.45 16 36 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 37 H 0.42 7.20 7.89 -92.71 -0.73 6.46 16 38 H 0.05 0.82 8.14 -2.38 -0.02 0.80 16 39 H 0.08 0.84 7.56 -2.39 -0.02 0.82 16 40 H 0.10 0.78 6.56 -2.39 -0.02 0.76 16 41 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 42 H 0.04 1.16 7.95 -2.39 -0.02 1.14 16 43 H 0.08 1.17 7.95 -2.39 -0.02 1.15 16 44 H 0.11 1.05 6.43 -2.39 -0.02 1.04 16 45 H 0.15 1.40 8.04 -2.91 -0.02 1.38 16 46 H 0.15 0.98 8.06 -2.91 -0.02 0.95 16 47 H 0.16 1.08 8.06 -2.91 -0.02 1.06 16 48 H 0.14 1.98 8.06 -2.91 -0.02 1.96 16 49 H 0.37 20.14 7.80 -92.70 -0.72 19.42 16 50 H 0.25 15.22 8.31 -92.71 -0.77 14.45 16 Total: -1.00 -80.03 414.10 3.68 -76.35 By element: Atomic # 1 Polarization: 32.69 SS G_CDS: -0.52 Total: 32.17 kcal Atomic # 6 Polarization: -15.10 SS G_CDS: 5.19 Total: -9.91 kcal Atomic # 7 Polarization: -116.62 SS G_CDS: -3.72 Total: -120.34 kcal Atomic # 8 Polarization: -25.26 SS G_CDS: -0.05 Total: -25.31 kcal Atomic # 9 Polarization: -3.71 SS G_CDS: 0.75 Total: -2.96 kcal Atomic # 14 Polarization: 47.97 SS G_CDS: 2.03 Total: 50.00 kcal Total: -80.03 3.68 -76.35 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317406520.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.474 kcal (2) G-P(sol) polarization free energy of solvation -80.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.348 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds