Wall clock time and date at job start Tue Mar 31 2020 21:02:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.46661 * 2 1 4 4 C 1.52992 * 109.47705 * 240.00190 * 2 1 3 5 5 C 1.52997 * 109.47482 * 174.99884 * 4 2 1 6 6 N 1.46899 * 109.47254 * 179.97438 * 5 4 2 7 7 C 1.46904 * 111.00029 * 179.97438 * 6 5 4 8 8 C 1.50696 * 109.46800 * 180.02562 * 7 6 5 9 9 O 1.21289 * 120.00338 * 0.02562 * 8 7 6 10 10 N 1.34782 * 119.99855 * 180.02562 * 8 7 6 11 11 C 1.37091 * 120.00193 * 180.02562 * 10 8 7 12 12 H 1.08002 * 120.00238 * 359.97438 * 11 10 8 13 13 C 1.38951 * 120.00205 * 180.02562 * 11 10 8 14 14 N 1.31410 * 120.00302 * 180.02562 * 13 11 10 15 15 Si 1.86807 * 119.99816 * 359.97438 * 13 11 10 16 16 H 1.48500 * 109.46776 * 90.00420 * 15 13 11 17 17 H 1.48495 * 109.47232 * 210.00549 * 15 13 11 18 18 H 1.48502 * 109.46976 * 330.00692 * 15 13 11 19 19 N 1.46497 * 109.47022 * 119.99544 * 2 1 3 20 20 C 1.34775 * 120.00290 * 275.00553 * 19 2 1 21 21 O 1.21284 * 120.00239 * 359.97438 * 20 19 2 22 22 C 1.50707 * 119.99766 * 179.97438 * 20 19 2 23 23 H 1.08997 * 109.47088 * 60.00406 * 22 20 19 24 24 C 1.52995 * 109.47045 * 299.99963 * 22 20 19 25 25 N 1.46501 * 109.46660 * 179.97438 * 22 20 19 26 26 C 1.36344 * 125.63528 * 59.69846 * 25 22 20 27 27 C 1.34860 * 108.21658 * 179.82556 * 26 25 22 28 28 C 1.40900 * 107.41570 * 0.42476 * 27 26 25 29 29 C 1.34847 * 107.41546 * 359.73341 * 28 27 26 30 30 H 1.09001 * 109.46974 * 60.00366 * 1 2 3 31 31 H 1.09000 * 109.46929 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47812 * 299.99528 * 1 2 3 33 33 H 1.09002 * 109.47103 * 54.99637 * 4 2 1 34 34 H 1.08998 * 109.46862 * 295.00449 * 4 2 1 35 35 H 1.09002 * 109.47153 * 59.99783 * 5 4 2 36 36 H 1.09001 * 109.46832 * 299.99974 * 5 4 2 37 37 H 1.00902 * 111.00582 * 303.95797 * 6 5 4 38 38 H 1.08995 * 109.47167 * 300.00240 * 7 6 5 39 39 H 1.09003 * 109.46442 * 60.00214 * 7 6 5 40 40 H 0.97000 * 119.99567 * 0.02562 * 10 8 7 41 41 H 0.96996 * 120.00205 * 179.97438 * 14 13 11 42 42 H 0.97003 * 119.99849 * 95.00425 * 19 2 1 43 43 H 1.09007 * 109.47141 * 299.99730 * 24 22 20 44 44 H 1.08994 * 109.47589 * 60.00271 * 24 22 20 45 45 H 1.09001 * 109.46860 * 180.02562 * 24 22 20 46 46 H 1.07998 * 125.89558 * 359.95077 * 26 25 22 47 47 H 1.07999 * 126.28962 * 180.15755 * 27 26 25 48 48 H 1.07991 * 126.29055 * 179.73411 * 28 27 26 49 49 H 1.08001 * 125.89259 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0401 -0.7211 -1.2492 5 6 3.5649 -0.6131 -1.3136 6 7 4.0547 -1.3061 -2.5127 7 6 5.5183 -1.2225 -2.6081 8 6 5.9826 -1.9423 -3.8479 9 8 5.1740 -2.4724 -4.5802 10 7 7.2966 -1.9971 -4.1430 11 6 7.7191 -2.6514 -5.2712 12 1 6.9991 -3.1235 -5.9233 13 6 9.0737 -2.7084 -5.5751 14 7 9.4787 -3.3352 -6.6568 15 14 10.3192 -1.8926 -4.4469 16 1 10.7637 -2.8642 -3.4156 17 1 11.4902 -1.4455 -5.2432 18 1 9.6937 -0.7196 -3.7850 19 7 2.0183 -0.6905 1.1962 20 6 2.1469 -0.0182 2.3572 21 8 1.8588 1.1587 2.4115 22 6 2.6487 -0.7288 3.5878 23 1 3.6478 -1.1212 3.3987 24 6 1.7042 -1.8823 3.9314 25 7 2.6985 0.2128 4.7091 26 6 1.6361 0.8996 5.2175 27 6 2.0761 1.6595 6.2411 28 6 3.4627 1.4410 6.3629 29 6 3.8161 0.5515 5.4130 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3635 0.5137 0.8900 33 1 1.6055 -0.2617 -2.1369 34 1 1.7517 -1.7714 -1.2056 35 1 3.9995 -1.0726 -0.4258 36 1 3.8532 0.4372 -1.3572 37 1 3.7453 -2.2664 -2.5272 38 1 5.8197 -0.1764 -2.6613 39 1 5.9666 -1.6856 -1.7291 40 1 7.9433 -1.5734 -3.5572 41 1 10.4243 -3.3746 -6.8692 42 1 2.2490 -1.6317 1.1527 43 1 0.7050 -1.4897 4.1205 44 1 1.6675 -2.5827 3.0971 45 1 2.0669 -2.3959 4.8217 46 1 0.6175 0.8432 4.8631 47 1 1.4766 2.3181 6.8520 48 1 4.1214 1.9013 7.0843 49 1 4.8125 0.1730 5.2393 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001320384745.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:02:25 Heat of formation + Delta-G solvation = -16.783790 kcal Electronic energy + Delta-G solvation = -28266.445533 eV Core-core repulsion = 24229.671182 eV Total energy + Delta-G solvation = -4036.774350 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.70157 -40.04375 -38.56110 -37.16176 -35.19161 -34.77204 -33.92679 -31.93602 -31.67164 -29.69507 -29.37649 -28.90406 -26.47381 -25.25978 -24.01153 -22.55074 -21.82049 -21.04004 -20.69896 -19.96578 -19.42116 -18.41674 -18.05036 -17.47360 -16.50627 -16.22431 -15.73954 -15.63236 -15.05626 -14.91422 -14.51445 -14.37885 -14.04579 -13.99266 -13.89440 -13.74186 -13.55756 -13.09120 -13.05545 -12.91096 -12.64263 -12.53499 -12.52412 -12.40489 -12.31076 -12.19689 -12.09987 -11.81561 -11.50380 -11.30715 -11.21220 -11.10933 -10.62961 -10.32855 -10.01278 -9.61390 -9.56697 -8.84752 -8.64918 -8.31366 -8.25437 -8.19956 -6.34771 -3.86415 1.93373 2.06640 2.41450 2.84748 2.90597 2.99754 3.03252 3.12204 3.69001 3.88576 3.98403 4.06809 4.19474 4.22268 4.57662 4.64296 4.66609 4.72800 4.92054 4.93301 4.98475 5.03400 5.07630 5.16580 5.20407 5.32019 5.35502 5.37693 5.41597 5.45200 5.53516 5.59531 5.73861 5.74205 5.81120 5.87914 5.93996 6.09347 6.10874 6.11417 6.80035 6.90816 7.00181 7.01466 7.14068 7.48910 7.54282 7.68582 8.10321 8.55619 8.90931 9.38332 9.78094 10.78242 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.014122 B = 0.001982 C = 0.001799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1982.308725 B =14125.118102 C =15560.081516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.143 3.857 3 H 0.091 0.909 4 C -0.125 4.125 5 C 0.060 3.940 6 N -0.669 5.669 7 C 0.049 3.951 8 C 0.449 3.551 9 O -0.565 6.565 10 N -0.590 5.590 11 C -0.306 4.306 12 H 0.120 0.880 13 C 0.041 3.959 14 N -0.880 5.880 15 Si 0.880 3.120 16 H -0.271 1.271 17 H -0.276 1.276 18 H -0.269 1.269 19 N -0.719 5.719 20 C 0.502 3.498 21 O -0.516 6.516 22 C 0.114 3.886 23 H 0.123 0.877 24 C -0.158 4.158 25 N -0.434 5.434 26 C 0.016 3.984 27 C -0.209 4.209 28 C -0.196 4.196 29 C -0.020 4.020 30 H 0.070 0.930 31 H 0.058 0.942 32 H 0.059 0.941 33 H 0.093 0.907 34 H 0.070 0.930 35 H 0.024 0.976 36 H 0.071 0.929 37 H 0.350 0.650 38 H 0.087 0.913 39 H 0.043 0.957 40 H 0.370 0.630 41 H 0.274 0.726 42 H 0.400 0.600 43 H 0.070 0.930 44 H 0.081 0.919 45 H 0.078 0.922 46 H 0.154 0.846 47 H 0.133 0.867 48 H 0.134 0.866 49 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.227 5.045 25.622 30.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.039 3.961 3 H 0.109 0.891 4 C -0.164 4.164 5 C -0.070 4.070 6 N -0.301 5.301 7 C -0.084 4.084 8 C 0.234 3.766 9 O -0.447 6.447 10 N -0.229 5.229 11 C -0.435 4.435 12 H 0.137 0.863 13 C -0.162 4.162 14 N -0.520 5.520 15 Si 0.706 3.294 16 H -0.197 1.197 17 H -0.201 1.201 18 H -0.195 1.195 19 N -0.372 5.372 20 C 0.286 3.714 21 O -0.391 6.391 22 C 0.007 3.993 23 H 0.141 0.859 24 C -0.216 4.216 25 N -0.111 5.111 26 C -0.114 4.114 27 C -0.233 4.233 28 C -0.221 4.221 29 C -0.148 4.148 30 H 0.089 0.911 31 H 0.077 0.923 32 H 0.078 0.922 33 H 0.112 0.888 34 H 0.088 0.912 35 H 0.043 0.957 36 H 0.090 0.910 37 H 0.169 0.831 38 H 0.105 0.895 39 H 0.061 0.939 40 H 0.203 0.797 41 H 0.084 0.916 42 H 0.235 0.765 43 H 0.089 0.911 44 H 0.100 0.900 45 H 0.097 0.903 46 H 0.171 0.829 47 H 0.151 0.849 48 H 0.152 0.848 49 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -15.916 5.779 24.297 29.616 hybrid contribution 1.691 -0.417 1.362 2.211 sum -14.225 5.362 25.659 29.824 Atomic orbital electron populations 1.22151 0.94797 1.02284 1.02765 1.21037 0.94205 0.97712 0.83138 0.89101 1.21888 0.95779 1.01368 0.97317 1.21968 0.94350 0.99823 0.90837 1.60027 1.09570 1.21818 1.38724 1.21699 0.88714 1.01324 0.96686 1.19697 0.82881 0.85675 0.88299 1.90563 1.52902 1.49374 1.51841 1.42211 1.05970 1.50490 1.24258 1.19430 0.93481 1.30271 1.00279 0.86267 1.25048 0.97010 0.97434 0.96680 1.69617 1.16307 1.41699 1.24388 0.86671 0.81980 0.79752 0.80982 1.19664 1.20106 1.19477 1.46109 1.67416 1.14104 1.09557 1.20607 0.78502 0.87676 0.84618 1.90792 1.48559 1.15307 1.84409 1.21276 1.03246 0.89745 0.85018 0.85934 1.22129 0.99549 0.96237 1.03707 1.43691 1.08192 1.34271 1.24908 1.21614 0.92620 0.98967 0.98150 1.20854 0.95494 1.05129 1.01836 1.20864 0.95912 1.03011 1.02327 1.21789 0.91052 1.04087 0.97871 0.91148 0.92311 0.92230 0.88846 0.91161 0.95743 0.91037 0.83073 0.89511 0.93886 0.79694 0.91574 0.76479 0.91057 0.90036 0.90301 0.82893 0.84917 0.84825 0.82360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.13 9.48 37.16 0.35 -0.78 16 2 C 0.14 1.09 2.57 -67.94 -0.17 0.91 16 3 H 0.09 0.88 7.58 -51.93 -0.39 0.49 16 4 C -0.13 -0.99 5.01 -26.74 -0.13 -1.13 16 5 C 0.06 0.61 5.57 -3.83 -0.02 0.59 16 6 N -0.67 -9.54 6.12 -115.06 -0.70 -10.25 16 7 C 0.05 0.77 6.17 -4.98 -0.03 0.74 16 8 C 0.45 9.98 7.82 -10.99 -0.09 9.90 16 9 O -0.56 -14.90 15.78 5.55 0.09 -14.81 16 10 N -0.59 -13.86 5.09 -10.97 -0.06 -13.92 16 11 C -0.31 -8.58 10.16 -14.94 -0.15 -8.73 16 12 H 0.12 3.82 7.39 -52.49 -0.39 3.44 16 13 C 0.04 1.13 5.50 -17.47 -0.10 1.03 16 14 N -0.88 -25.51 13.96 55.50 0.77 -24.73 16 15 Si 0.88 19.15 27.74 -169.99 -4.71 14.44 16 16 H -0.27 -5.76 7.11 56.52 0.40 -5.35 16 17 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 18 H -0.27 -5.36 6.52 56.52 0.37 -4.99 16 19 N -0.72 -4.57 4.42 -53.81 -0.24 -4.80 16 20 C 0.50 4.27 7.08 -10.98 -0.08 4.20 16 21 O -0.52 -6.65 15.10 5.55 0.08 -6.56 16 22 C 0.11 0.73 3.36 -69.08 -0.23 0.49 16 23 H 0.12 0.54 8.06 -51.93 -0.42 0.12 16 24 C -0.16 -0.64 9.14 37.15 0.34 -0.30 16 25 N -0.43 -3.91 2.40 -111.25 -0.27 -4.18 16 26 C 0.02 0.16 9.56 -16.74 -0.16 0.00 16 27 C -0.21 -2.13 10.86 -39.77 -0.43 -2.56 16 28 C -0.20 -1.93 10.86 -39.78 -0.43 -2.36 16 29 C -0.02 -0.18 11.39 -16.75 -0.19 -0.37 16 30 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 33 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.02 0.22 7.75 -51.93 -0.40 -0.18 16 36 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 37 H 0.35 5.05 8.43 -39.29 -0.33 4.72 16 38 H 0.09 1.28 8.14 -51.93 -0.42 0.85 16 39 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 40 H 0.37 7.63 5.76 -40.82 -0.24 7.39 16 41 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 42 H 0.40 1.59 8.02 -40.82 -0.33 1.27 16 43 H 0.07 0.34 7.93 -51.93 -0.41 -0.07 16 44 H 0.08 0.17 7.56 -51.93 -0.39 -0.22 16 45 H 0.08 0.31 8.14 -51.93 -0.42 -0.12 16 46 H 0.15 1.37 8.06 -52.49 -0.42 0.94 16 47 H 0.13 1.14 8.06 -52.49 -0.42 0.72 16 48 H 0.13 1.09 8.06 -52.49 -0.42 0.66 16 49 H 0.16 1.04 8.06 -52.49 -0.42 0.62 16 LS Contribution 408.18 15.07 6.15 6.15 Total: -1.00 -35.99 408.18 -8.38 -44.37 By element: Atomic # 1 Polarization: 20.63 SS G_CDS: -7.97 Total: 12.66 kcal Atomic # 6 Polarization: 3.16 SS G_CDS: -1.53 Total: 1.63 kcal Atomic # 7 Polarization: -57.39 SS G_CDS: -0.49 Total: -57.88 kcal Atomic # 8 Polarization: -21.55 SS G_CDS: 0.17 Total: -21.38 kcal Atomic # 14 Polarization: 19.15 SS G_CDS: -4.71 Total: 14.44 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -35.99 -8.38 -44.37 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320384745.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.586 kcal (2) G-P(sol) polarization free energy of solvation -35.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.370 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds