Wall clock time and date at job start Tue Mar 31 2020 21:02:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.46661 * 2 1 4 4 C 1.52992 * 109.47705 * 240.00190 * 2 1 3 5 5 C 1.52997 * 109.47482 * 174.99884 * 4 2 1 6 6 N 1.46899 * 109.47254 * 179.97438 * 5 4 2 7 7 C 1.46904 * 111.00029 * 179.97438 * 6 5 4 8 8 C 1.50696 * 109.46800 * 180.02562 * 7 6 5 9 9 O 1.21289 * 120.00338 * 0.02562 * 8 7 6 10 10 N 1.34782 * 119.99855 * 180.02562 * 8 7 6 11 11 C 1.37091 * 120.00193 * 180.02562 * 10 8 7 12 12 H 1.08002 * 120.00238 * 359.97438 * 11 10 8 13 13 C 1.38951 * 120.00205 * 180.02562 * 11 10 8 14 14 N 1.31410 * 120.00302 * 180.02562 * 13 11 10 15 15 Si 1.86807 * 119.99816 * 359.97438 * 13 11 10 16 16 H 1.48500 * 109.46776 * 90.00420 * 15 13 11 17 17 H 1.48495 * 109.47232 * 210.00549 * 15 13 11 18 18 H 1.48502 * 109.46976 * 330.00692 * 15 13 11 19 19 N 1.46497 * 109.47022 * 119.99544 * 2 1 3 20 20 C 1.34775 * 120.00290 * 275.00553 * 19 2 1 21 21 O 1.21284 * 120.00239 * 359.97438 * 20 19 2 22 22 C 1.50707 * 119.99766 * 179.97438 * 20 19 2 23 23 H 1.08997 * 109.47088 * 60.00406 * 22 20 19 24 24 C 1.52995 * 109.47045 * 299.99963 * 22 20 19 25 25 N 1.46501 * 109.46660 * 179.97438 * 22 20 19 26 26 C 1.36344 * 125.63528 * 59.69846 * 25 22 20 27 27 C 1.34860 * 108.21658 * 179.82556 * 26 25 22 28 28 C 1.40900 * 107.41570 * 0.42476 * 27 26 25 29 29 C 1.34847 * 107.41546 * 359.73341 * 28 27 26 30 30 H 1.09001 * 109.46974 * 60.00366 * 1 2 3 31 31 H 1.09000 * 109.46929 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47812 * 299.99528 * 1 2 3 33 33 H 1.09002 * 109.47103 * 54.99637 * 4 2 1 34 34 H 1.08998 * 109.46862 * 295.00449 * 4 2 1 35 35 H 1.09002 * 109.47153 * 59.99783 * 5 4 2 36 36 H 1.09001 * 109.46832 * 299.99974 * 5 4 2 37 37 H 1.00902 * 111.00582 * 303.95797 * 6 5 4 38 38 H 1.08995 * 109.47167 * 300.00240 * 7 6 5 39 39 H 1.09003 * 109.46442 * 60.00214 * 7 6 5 40 40 H 0.97000 * 119.99567 * 0.02562 * 10 8 7 41 41 H 0.96996 * 120.00205 * 179.97438 * 14 13 11 42 42 H 0.97003 * 119.99849 * 95.00425 * 19 2 1 43 43 H 1.09007 * 109.47141 * 299.99730 * 24 22 20 44 44 H 1.08994 * 109.47589 * 60.00271 * 24 22 20 45 45 H 1.09001 * 109.46860 * 180.02562 * 24 22 20 46 46 H 1.07998 * 125.89558 * 359.95077 * 26 25 22 47 47 H 1.07999 * 126.28962 * 180.15755 * 27 26 25 48 48 H 1.07991 * 126.29055 * 179.73411 * 28 27 26 49 49 H 1.08001 * 125.89259 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0401 -0.7211 -1.2492 5 6 3.5649 -0.6131 -1.3136 6 7 4.0547 -1.3061 -2.5127 7 6 5.5183 -1.2225 -2.6081 8 6 5.9826 -1.9423 -3.8479 9 8 5.1740 -2.4724 -4.5802 10 7 7.2966 -1.9971 -4.1430 11 6 7.7191 -2.6514 -5.2712 12 1 6.9991 -3.1235 -5.9233 13 6 9.0737 -2.7084 -5.5751 14 7 9.4787 -3.3352 -6.6568 15 14 10.3192 -1.8926 -4.4469 16 1 10.7637 -2.8642 -3.4156 17 1 11.4902 -1.4455 -5.2432 18 1 9.6937 -0.7196 -3.7850 19 7 2.0183 -0.6905 1.1962 20 6 2.1469 -0.0182 2.3572 21 8 1.8588 1.1587 2.4115 22 6 2.6487 -0.7288 3.5878 23 1 3.6478 -1.1212 3.3987 24 6 1.7042 -1.8823 3.9314 25 7 2.6985 0.2128 4.7091 26 6 1.6361 0.8996 5.2175 27 6 2.0761 1.6595 6.2411 28 6 3.4627 1.4410 6.3629 29 6 3.8161 0.5515 5.4130 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3635 0.5137 0.8900 33 1 1.6055 -0.2617 -2.1369 34 1 1.7517 -1.7714 -1.2056 35 1 3.9995 -1.0726 -0.4258 36 1 3.8532 0.4372 -1.3572 37 1 3.7453 -2.2664 -2.5272 38 1 5.8197 -0.1764 -2.6613 39 1 5.9666 -1.6856 -1.7291 40 1 7.9433 -1.5734 -3.5572 41 1 10.4243 -3.3746 -6.8692 42 1 2.2490 -1.6317 1.1527 43 1 0.7050 -1.4897 4.1205 44 1 1.6675 -2.5827 3.0971 45 1 2.0669 -2.3959 4.8217 46 1 0.6175 0.8432 4.8631 47 1 1.4766 2.3181 6.8520 48 1 4.1214 1.9013 7.0843 49 1 4.8125 0.1730 5.2393 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001320384745.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:02:24 Heat of formation + Delta-G solvation = -44.017395 kcal Electronic energy + Delta-G solvation = -28267.626470 eV Core-core repulsion = 24229.671182 eV Total energy + Delta-G solvation = -4037.955288 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.33377 -40.72078 -40.29165 -38.01655 -36.33560 -35.75510 -35.32887 -33.75659 -32.61619 -30.49951 -30.05537 -29.55128 -27.89705 -25.88165 -25.46927 -23.42003 -22.52706 -21.70245 -21.35461 -21.27614 -20.61259 -20.25432 -18.71045 -18.07736 -17.81536 -17.28896 -16.86804 -16.63804 -16.35153 -15.83371 -15.52052 -15.41893 -15.06550 -14.97789 -14.87677 -14.53510 -14.44397 -14.39808 -14.07361 -13.86567 -13.65161 -13.42185 -13.33372 -13.18727 -13.05303 -12.97804 -12.96063 -12.82782 -12.60814 -12.42513 -12.27877 -12.07694 -11.98447 -11.80718 -11.51722 -11.01054 -10.46031 -10.25616 -10.18631 -9.51946 -9.31859 -9.00882 -8.41828 -6.02813 1.27759 1.30196 1.34786 1.44266 1.44907 1.84223 1.94723 2.18293 2.22397 2.27153 2.69683 3.14616 3.35190 3.48734 3.77781 3.81134 3.88691 4.01255 4.12190 4.15745 4.19199 4.38376 4.41089 4.41812 4.49703 4.55908 4.58939 4.62552 4.67584 4.75694 4.78224 4.81193 4.93999 5.05579 5.09229 5.19130 5.29729 5.41030 5.43577 5.48589 5.52002 5.89922 6.03915 6.10786 6.31622 6.35928 6.42696 6.55736 6.59034 6.87433 7.12292 7.39080 7.95357 8.75671 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.014122 B = 0.001982 C = 0.001799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1982.308725 B =14125.118102 C =15560.081516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.151 3.849 3 H 0.068 0.932 4 C -0.115 4.115 5 C 0.063 3.937 6 N -0.688 5.688 7 C 0.062 3.938 8 C 0.448 3.552 9 O -0.613 6.613 10 N -0.591 5.591 11 C -0.329 4.329 12 H 0.056 0.944 13 C -0.016 4.016 14 N -0.934 5.934 15 Si 0.965 3.035 16 H -0.255 1.255 17 H -0.276 1.276 18 H -0.233 1.233 19 N -0.704 5.704 20 C 0.503 3.497 21 O -0.566 6.566 22 C 0.113 3.887 23 H 0.150 0.850 24 C -0.153 4.153 25 N -0.436 5.436 26 C 0.001 3.999 27 C -0.230 4.230 28 C -0.220 4.220 29 C -0.023 4.023 30 H 0.072 0.928 31 H 0.073 0.927 32 H 0.043 0.957 33 H 0.084 0.916 34 H 0.086 0.914 35 H 0.046 0.954 36 H 0.065 0.935 37 H 0.348 0.652 38 H 0.107 0.893 39 H 0.080 0.920 40 H 0.389 0.611 41 H 0.279 0.721 42 H 0.416 0.584 43 H 0.059 0.941 44 H 0.106 0.894 45 H 0.083 0.917 46 H 0.155 0.845 47 H 0.138 0.862 48 H 0.144 0.856 49 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.137 5.213 28.257 32.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.046 3.954 3 H 0.087 0.913 4 C -0.153 4.153 5 C -0.065 4.065 6 N -0.321 5.321 7 C -0.070 4.070 8 C 0.236 3.764 9 O -0.498 6.498 10 N -0.233 5.233 11 C -0.458 4.458 12 H 0.074 0.926 13 C -0.214 4.214 14 N -0.574 5.574 15 Si 0.785 3.215 16 H -0.179 1.179 17 H -0.202 1.202 18 H -0.156 1.156 19 N -0.357 5.357 20 C 0.288 3.712 21 O -0.444 6.444 22 C 0.007 3.993 23 H 0.168 0.832 24 C -0.210 4.210 25 N -0.113 5.113 26 C -0.129 4.129 27 C -0.254 4.254 28 C -0.244 4.244 29 C -0.151 4.151 30 H 0.091 0.909 31 H 0.092 0.908 32 H 0.062 0.938 33 H 0.102 0.898 34 H 0.104 0.896 35 H 0.064 0.936 36 H 0.084 0.916 37 H 0.167 0.833 38 H 0.125 0.875 39 H 0.097 0.903 40 H 0.225 0.775 41 H 0.089 0.911 42 H 0.254 0.746 43 H 0.079 0.921 44 H 0.125 0.875 45 H 0.102 0.898 46 H 0.172 0.828 47 H 0.156 0.844 48 H 0.162 0.838 49 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -14.848 5.921 26.945 31.330 hybrid contribution 1.217 -0.521 0.454 1.399 sum -13.631 5.401 27.399 31.076 Atomic orbital electron populations 1.22097 0.94285 1.03010 1.02123 1.20850 0.94494 0.96646 0.83396 0.91329 1.21774 0.94346 1.02241 0.96939 1.22009 0.95506 0.99077 0.89944 1.60003 1.08633 1.22072 1.41401 1.21607 0.89969 1.01501 0.93917 1.21007 0.81902 0.84115 0.89423 1.90542 1.54143 1.51101 1.54005 1.42046 1.07097 1.50759 1.23384 1.19006 0.93143 1.31947 1.01723 0.92617 1.26126 0.99150 0.97636 0.98538 1.69801 1.17283 1.43375 1.26959 0.85367 0.77860 0.79785 0.78517 1.17930 1.20162 1.15601 1.45969 1.66423 1.14703 1.08619 1.20999 0.77652 0.87103 0.85479 1.90781 1.50862 1.17559 1.85184 1.21548 1.05171 0.89410 0.83158 0.83243 1.22138 0.98302 0.95623 1.04984 1.43902 1.07768 1.34333 1.25258 1.21739 0.93211 0.99515 0.98429 1.21123 0.96198 1.05691 1.02409 1.21151 0.95969 1.03935 1.03381 1.22260 0.92049 1.03496 0.97338 0.90930 0.90847 0.93785 0.89789 0.89572 0.93563 0.91600 0.83315 0.87532 0.90269 0.77501 0.91143 0.74624 0.92149 0.87508 0.89762 0.82769 0.84444 0.83832 0.79780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.96 9.48 71.98 0.68 -1.28 16 2 C 0.15 2.00 2.57 44.99 0.12 2.11 16 3 H 0.07 1.27 7.58 -2.39 -0.02 1.25 16 4 C -0.11 -1.53 5.01 30.59 0.15 -1.37 16 5 C 0.06 1.08 5.57 86.30 0.48 1.56 16 6 N -0.69 -17.84 6.12 -517.93 -3.17 -21.01 16 7 C 0.06 1.77 6.17 85.55 0.53 2.30 16 8 C 0.45 19.52 7.82 87.65 0.69 20.20 16 9 O -0.61 -33.07 15.78 -3.06 -0.05 -33.12 16 10 N -0.59 -27.21 5.09 -306.99 -1.56 -28.78 16 11 C -0.33 -19.01 10.16 84.04 0.85 -18.16 16 12 H 0.06 3.84 7.39 -2.91 -0.02 3.82 16 13 C -0.02 -0.87 5.50 84.93 0.47 -0.40 16 14 N -0.93 -55.74 13.96 21.66 0.30 -55.43 16 15 Si 0.96 38.07 27.74 68.60 1.90 39.98 16 16 H -0.25 -9.42 7.11 99.48 0.71 -8.72 16 17 H -0.28 -10.92 7.11 99.48 0.71 -10.22 16 18 H -0.23 -7.74 6.52 99.48 0.65 -7.09 16 19 N -0.70 -6.95 4.42 -442.54 -1.96 -8.91 16 20 C 0.50 7.56 7.08 87.66 0.62 8.18 16 21 O -0.57 -14.29 15.10 -3.04 -0.05 -14.33 16 22 C 0.11 1.13 3.36 44.25 0.15 1.28 16 23 H 0.15 0.69 8.06 -2.39 -0.02 0.67 16 24 C -0.15 -0.80 9.14 71.98 0.66 -0.14 16 25 N -0.44 -7.20 2.40 -505.90 -1.22 -8.42 16 26 C 0.00 0.02 9.56 83.22 0.80 0.82 16 27 C -0.23 -4.72 10.86 22.15 0.24 -4.48 16 28 C -0.22 -4.17 10.86 22.14 0.24 -3.93 16 29 C -0.02 -0.37 11.39 83.21 0.95 0.57 16 30 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.07 0.70 8.14 -2.39 -0.02 0.69 16 32 H 0.04 0.70 8.14 -2.39 -0.02 0.69 16 33 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 34 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 35 H 0.05 0.61 7.75 -2.39 -0.02 0.59 16 36 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 37 H 0.35 9.28 8.43 -89.69 -0.76 8.52 16 38 H 0.11 2.68 8.14 -2.39 -0.02 2.66 16 39 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 40 H 0.39 14.76 5.76 -92.71 -0.53 14.22 16 41 H 0.28 15.21 8.31 -92.71 -0.77 14.44 16 42 H 0.42 1.59 8.02 -92.71 -0.74 0.85 16 43 H 0.06 0.47 7.93 -2.38 -0.02 0.46 16 44 H 0.11 0.01 7.56 -2.39 -0.02 -0.01 16 45 H 0.08 0.40 8.14 -2.39 -0.02 0.38 16 46 H 0.15 2.84 8.06 -2.91 -0.02 2.82 16 47 H 0.14 2.46 8.06 -2.91 -0.02 2.44 16 48 H 0.14 2.24 8.06 -2.92 -0.02 2.22 16 49 H 0.19 1.87 8.06 -2.91 -0.02 1.85 16 Total: -1.00 -84.92 408.18 0.70 -84.22 By element: Atomic # 1 Polarization: 39.65 SS G_CDS: -1.13 Total: 38.52 kcal Atomic # 6 Polarization: -0.35 SS G_CDS: 7.62 Total: 7.27 kcal Atomic # 7 Polarization: -114.94 SS G_CDS: -7.60 Total: -122.54 kcal Atomic # 8 Polarization: -47.36 SS G_CDS: -0.09 Total: -47.45 kcal Atomic # 14 Polarization: 38.07 SS G_CDS: 1.90 Total: 39.98 kcal Total: -84.92 0.70 -84.22 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320384745.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.207 kcal (2) G-P(sol) polarization free energy of solvation -84.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.224 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds