Wall clock time and date at job start Tue Mar 31 2020 21:02:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09002 * 109.46813 * 2 1 4 4 C 1.50700 * 109.47160 * 240.00308 * 2 1 3 5 5 O 1.21281 * 119.99564 * 239.99525 * 4 2 1 6 6 N 1.34776 * 120.00366 * 59.99721 * 4 2 1 7 7 C 1.46491 * 120.00063 * 179.97438 * 6 4 2 8 8 H 1.08996 * 109.47499 * 325.00190 * 7 6 4 9 9 C 1.53002 * 109.47422 * 84.99997 * 7 6 4 10 10 C 1.53003 * 109.47327 * 204.99949 * 7 6 4 11 11 C 1.53000 * 109.46788 * 64.99975 * 10 7 6 12 12 N 1.46902 * 109.46851 * 180.02562 * 11 10 7 13 13 C 1.46901 * 111.00056 * 180.02562 * 12 11 10 14 14 C 1.50698 * 109.47338 * 180.02562 * 13 12 11 15 15 O 1.21297 * 119.99950 * 359.97438 * 14 13 12 16 16 N 1.34771 * 120.00148 * 179.97438 * 14 13 12 17 17 C 1.37096 * 120.00151 * 179.97438 * 16 14 13 18 18 H 1.08003 * 119.99926 * 359.97438 * 17 16 14 19 19 C 1.38950 * 119.99955 * 180.02562 * 17 16 14 20 20 N 1.31404 * 120.00173 * 359.97438 * 19 17 16 21 21 Si 1.86805 * 119.99905 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.47253 * 59.99158 * 21 19 17 23 23 H 1.48499 * 109.47349 * 179.97438 * 21 19 17 24 24 H 1.48504 * 109.46597 * 299.99126 * 21 19 17 25 25 N 1.46492 * 109.47264 * 119.99866 * 2 1 3 26 26 C 1.36343 * 125.63672 * 240.00310 * 25 2 1 27 27 C 1.34854 * 108.21624 * 179.76945 * 26 25 2 28 28 C 1.40882 * 107.41837 * 0.22622 * 27 26 25 29 29 C 1.34845 * 107.41854 * 359.97438 * 28 27 26 30 30 H 1.09002 * 109.46813 * 179.97438 * 1 2 3 31 31 H 1.08993 * 109.47112 * 300.00157 * 1 2 3 32 32 H 1.09006 * 109.46945 * 60.00355 * 1 2 3 33 33 H 0.97006 * 119.99592 * 359.97438 * 6 4 2 34 34 H 1.08993 * 109.47697 * 180.02562 * 9 7 6 35 35 H 1.08999 * 109.47044 * 300.00522 * 9 7 6 36 36 H 1.09002 * 109.47223 * 59.99978 * 9 7 6 37 37 H 1.08994 * 109.46960 * 185.00171 * 10 7 6 38 38 H 1.08994 * 109.46749 * 305.00068 * 10 7 6 39 39 H 1.09002 * 109.47249 * 299.99653 * 11 10 7 40 40 H 1.08994 * 109.47400 * 60.00491 * 11 10 7 41 41 H 1.00903 * 111.00243 * 303.95181 * 12 11 10 42 42 H 1.08996 * 109.46696 * 299.99921 * 13 12 11 43 43 H 1.09002 * 109.46858 * 59.99902 * 13 12 11 44 44 H 0.97000 * 120.00341 * 0.02562 * 16 14 13 45 45 H 0.97002 * 120.00448 * 180.02562 * 20 19 17 46 46 H 1.08002 * 125.89310 * 0.03699 * 26 25 2 47 47 H 1.08007 * 126.28715 * 180.22692 * 27 26 25 48 48 H 1.08010 * 126.28983 * 180.02562 * 28 27 26 49 49 H 1.08000 * 125.89155 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 8 2.7297 -1.6964 -1.1192 6 7 1.7068 -0.2499 -2.4546 7 6 2.1956 -0.9401 -3.6507 8 1 3.1949 -1.3319 -3.4613 9 6 1.2522 -2.0945 -3.9949 10 6 2.2468 0.0431 -4.8219 11 6 3.2831 1.1303 -4.5300 12 7 3.3318 2.0746 -5.6542 13 6 4.3188 3.1347 -5.4088 14 6 4.3400 4.0823 -6.5803 15 8 3.6054 3.8930 -7.5269 16 7 5.1750 5.1402 -6.5764 17 6 5.1946 6.0020 -7.6424 18 1 4.5412 5.8330 -8.4856 19 6 6.0560 7.0923 -7.6386 20 7 6.8514 7.2977 -6.6130 21 14 6.0822 8.2670 -9.0908 22 1 4.7372 8.8728 -9.2619 23 1 7.0795 9.3389 -8.8425 24 1 6.4505 7.5233 -10.3223 25 7 2.0184 -0.6905 1.1961 26 6 2.8055 -0.1416 2.1646 27 6 3.0399 -1.0830 3.1012 28 6 2.3775 -2.2576 2.6935 29 6 1.7630 -1.9892 1.5236 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8901 33 1 1.1488 0.5386 -2.5436 34 1 1.6161 -2.6083 -4.8845 35 1 1.2156 -2.7949 -3.1605 36 1 0.2528 -1.7027 -4.1844 37 1 2.5251 -0.4893 -5.7313 38 1 1.2669 0.5014 -4.9545 39 1 3.0048 1.6627 -3.6205 40 1 4.2630 0.6720 -4.3973 41 1 3.5244 1.5954 -6.5210 42 1 4.0484 3.6807 -4.5051 43 1 5.3060 2.6899 -5.2829 44 1 5.7627 5.2914 -5.8197 45 1 7.4524 8.0590 -6.6101 46 1 3.1738 0.8736 2.1812 47 1 3.6275 -0.9592 3.9990 48 1 2.3636 -3.1998 3.2214 49 1 1.1681 -2.6822 0.9473 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001320384747.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:02:29 Heat of formation + Delta-G solvation = -24.342196 kcal Electronic energy + Delta-G solvation = -28187.425175 eV Core-core repulsion = 24150.323068 eV Total energy + Delta-G solvation = -4037.102107 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.64678 -39.98347 -38.36583 -37.07646 -35.10039 -34.70786 -33.86221 -31.84864 -31.24508 -29.61634 -29.28645 -28.85020 -26.30901 -25.19722 -24.14238 -22.52109 -21.76960 -20.96247 -20.64365 -19.91733 -19.27272 -18.06509 -17.88149 -17.42082 -16.46513 -16.15156 -15.70440 -15.56140 -14.93644 -14.63562 -14.41392 -14.34005 -14.02898 -13.87010 -13.83037 -13.72834 -13.63524 -13.20197 -13.00516 -12.86286 -12.59593 -12.47729 -12.36591 -12.30858 -12.25889 -12.04013 -11.71771 -11.54638 -11.36494 -11.32160 -11.08290 -10.99319 -10.46855 -10.27172 -10.24434 -9.53386 -9.49258 -8.79625 -8.51980 -8.26253 -8.13077 -7.99748 -6.44764 -3.85903 1.99154 2.12983 2.46994 2.91259 2.95506 3.17662 3.23670 3.27846 3.86542 3.95617 4.04802 4.20869 4.26640 4.30086 4.69178 4.71005 4.76388 4.84423 4.98557 5.00472 5.05070 5.08465 5.18898 5.24510 5.25360 5.38060 5.41452 5.46123 5.48197 5.50032 5.57236 5.73093 5.80676 5.84811 5.92294 5.98192 6.13615 6.15475 6.16412 6.22351 6.85127 6.97967 7.06705 7.13296 7.19875 7.51879 7.58137 7.75100 8.02571 8.57588 9.14341 9.50581 10.01843 10.72810 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.016254 B = 0.001823 C = 0.001692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1722.252957 B =15355.735582 C =16540.499535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.114 3.886 3 H 0.124 0.876 4 C 0.503 3.497 5 O -0.518 6.518 6 N -0.718 5.718 7 C 0.144 3.856 8 H 0.089 0.911 9 C -0.162 4.162 10 C -0.126 4.126 11 C 0.059 3.941 12 N -0.669 5.669 13 C 0.051 3.949 14 C 0.440 3.560 15 O -0.584 6.584 16 N -0.563 5.563 17 C -0.301 4.301 18 H 0.103 0.897 19 C 0.022 3.978 20 N -0.902 5.902 21 Si 0.932 3.068 22 H -0.273 1.273 23 H -0.284 1.284 24 H -0.274 1.274 25 N -0.433 5.433 26 C -0.019 4.019 27 C -0.197 4.197 28 C -0.209 4.209 29 C 0.016 3.984 30 H 0.070 0.930 31 H 0.078 0.922 32 H 0.082 0.918 33 H 0.403 0.597 34 H 0.068 0.932 35 H 0.059 0.941 36 H 0.059 0.941 37 H 0.081 0.919 38 H 0.081 0.919 39 H 0.068 0.932 40 H 0.027 0.973 41 H 0.349 0.651 42 H 0.084 0.916 43 H 0.043 0.957 44 H 0.392 0.608 45 H 0.272 0.728 46 H 0.159 0.841 47 H 0.134 0.866 48 H 0.133 0.867 49 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.685 -16.623 16.309 26.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.007 3.993 3 H 0.142 0.858 4 C 0.286 3.714 5 O -0.393 6.393 6 N -0.371 5.371 7 C 0.039 3.961 8 H 0.107 0.893 9 C -0.220 4.220 10 C -0.164 4.164 11 C -0.071 4.071 12 N -0.302 5.302 13 C -0.082 4.082 14 C 0.225 3.775 15 O -0.468 6.468 16 N -0.199 5.199 17 C -0.431 4.431 18 H 0.121 0.879 19 C -0.179 4.179 20 N -0.543 5.543 21 Si 0.759 3.241 22 H -0.199 1.199 23 H -0.210 1.210 24 H -0.199 1.199 25 N -0.110 5.110 26 C -0.147 4.147 27 C -0.222 4.222 28 C -0.233 4.233 29 C -0.114 4.114 30 H 0.089 0.911 31 H 0.097 0.903 32 H 0.101 0.899 33 H 0.238 0.762 34 H 0.087 0.913 35 H 0.078 0.922 36 H 0.078 0.922 37 H 0.100 0.900 38 H 0.099 0.901 39 H 0.087 0.913 40 H 0.045 0.955 41 H 0.169 0.831 42 H 0.103 0.897 43 H 0.061 0.939 44 H 0.225 0.775 45 H 0.082 0.918 46 H 0.177 0.823 47 H 0.152 0.848 48 H 0.150 0.850 49 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -12.160 -16.755 15.694 25.979 hybrid contribution 1.149 0.711 -0.382 1.404 sum -11.011 -16.044 15.312 24.761 Atomic orbital electron populations 1.22133 0.91119 1.04116 1.04256 1.21284 0.96868 0.97671 0.83489 0.85805 1.20607 0.80784 0.85217 0.84758 1.90786 1.36638 1.25549 1.86294 1.46091 1.53645 1.32153 1.05185 1.21017 0.98910 0.92464 0.83663 0.89328 1.22152 0.99682 0.98064 1.02098 1.21883 1.01158 0.96002 0.97337 1.21957 0.97102 0.92963 0.95058 1.60104 1.51712 1.13517 1.04824 1.21664 0.93765 0.93838 0.98941 1.19794 0.84511 0.84241 0.88942 1.90521 1.43829 1.75420 1.37062 1.41860 1.35287 1.22812 1.19972 1.19658 1.20995 1.03983 0.98418 0.87949 1.25273 0.95967 0.98289 0.98406 1.69599 1.24009 1.30497 1.30164 0.85906 0.78072 0.79340 0.80831 1.19868 1.20957 1.19897 1.43693 1.40055 1.10457 1.16804 1.21803 1.01440 0.99962 0.91524 1.20859 1.06371 0.93876 1.01076 1.20839 1.05125 0.99279 0.98106 1.21600 1.05840 0.85537 0.98407 0.91118 0.90304 0.89949 0.76214 0.91319 0.92238 0.92210 0.90022 0.90082 0.91319 0.95522 0.83138 0.89735 0.93906 0.77459 0.91777 0.82311 0.84844 0.84961 0.82934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.73 9.13 37.16 0.34 -0.39 16 2 C 0.11 0.79 3.36 -69.08 -0.23 0.56 16 3 H 0.12 0.63 8.06 -51.93 -0.42 0.21 16 4 C 0.50 4.56 7.08 -10.99 -0.08 4.49 16 5 O -0.52 -6.93 15.11 5.56 0.08 -6.84 16 6 N -0.72 -5.06 4.42 -53.81 -0.24 -5.30 16 7 C 0.14 1.17 2.57 -67.93 -0.17 0.99 16 8 H 0.09 0.90 7.58 -51.93 -0.39 0.51 16 9 C -0.16 -1.19 9.48 37.16 0.35 -0.84 16 10 C -0.13 -1.07 5.01 -26.73 -0.13 -1.21 16 11 C 0.06 0.65 5.57 -3.82 -0.02 0.63 16 12 N -0.67 -10.14 6.13 -115.06 -0.70 -10.84 16 13 C 0.05 0.87 6.17 -4.98 -0.03 0.84 16 14 C 0.44 10.24 7.82 -10.99 -0.09 10.16 16 15 O -0.58 -15.64 15.78 5.54 0.09 -15.56 16 16 N -0.56 -14.15 5.29 -10.96 -0.06 -14.21 16 17 C -0.30 -8.34 9.68 -14.93 -0.14 -8.49 16 18 H 0.10 2.97 7.16 -52.48 -0.38 2.59 16 19 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 20 N -0.90 -24.37 13.05 55.50 0.72 -23.64 16 21 Si 0.93 20.88 29.55 -169.99 -5.02 15.86 16 22 H -0.27 -6.09 7.11 56.52 0.40 -5.68 16 23 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 24 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 25 N -0.43 -4.11 2.40 -111.26 -0.27 -4.38 16 26 C -0.02 -0.18 11.39 -16.75 -0.19 -0.37 16 27 C -0.20 -2.01 10.86 -39.78 -0.43 -2.45 16 28 C -0.21 -2.21 10.86 -39.79 -0.43 -2.64 16 29 C 0.02 0.16 9.56 -16.75 -0.16 0.00 16 30 H 0.07 0.37 7.92 -51.93 -0.41 -0.04 16 31 H 0.08 0.35 8.14 -51.93 -0.42 -0.08 16 32 H 0.08 0.23 7.56 -51.93 -0.39 -0.17 16 33 H 0.40 1.97 8.02 -40.82 -0.33 1.64 16 34 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 35 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 36 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 37 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 38 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.07 0.71 7.75 -51.93 -0.40 0.31 16 40 H 0.03 0.30 8.14 -51.93 -0.42 -0.12 16 41 H 0.35 5.50 8.43 -39.29 -0.33 5.17 16 42 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 43 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 44 H 0.39 9.43 7.90 -40.82 -0.32 9.10 16 45 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 46 H 0.16 1.13 8.06 -52.49 -0.42 0.70 16 47 H 0.13 1.14 8.06 -52.48 -0.42 0.71 16 48 H 0.13 1.18 8.06 -52.48 -0.42 0.76 16 49 H 0.15 1.42 8.06 -52.49 -0.42 1.00 16 LS Contribution 411.30 15.07 6.20 6.20 Total: -1.00 -34.65 411.30 -8.72 -43.37 By element: Atomic # 1 Polarization: 21.56 SS G_CDS: -8.01 Total: 13.55 kcal Atomic # 6 Polarization: 3.31 SS G_CDS: -1.52 Total: 1.79 kcal Atomic # 7 Polarization: -57.83 SS G_CDS: -0.54 Total: -58.37 kcal Atomic # 8 Polarization: -22.57 SS G_CDS: 0.17 Total: -22.40 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -34.65 -8.72 -43.37 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320384747.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.029 kcal (2) G-P(sol) polarization free energy of solvation -34.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.371 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds