Wall clock time and date at job start Tue Mar 31 2020 19:19:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34223 * 117.00263 * 2 1 4 4 O 1.20829 * 119.99817 * 359.97438 * 3 2 1 5 5 C 1.50694 * 120.00551 * 179.97438 * 3 2 1 6 6 H 1.09003 * 110.64401 * 61.69681 * 5 3 2 7 7 C 1.54940 * 110.72551 * 298.54908 * 5 3 2 8 8 N 1.48533 * 103.22566 * 204.22280 * 7 5 3 9 9 C 1.38585 * 110.99506 * 159.71796 * 8 7 5 10 10 N 1.31218 * 126.47368 * 323.79387 * 9 8 7 11 11 N 1.28527 * 109.85512 * 179.82030 * 10 9 8 12 12 C 1.30294 * 110.05830 * 0.45816 * 11 10 9 13 13 C 1.50698 * 126.34958 * 179.76369 * 12 11 10 14 14 C 1.53003 * 109.46767 * 269.95556 * 13 12 11 15 15 C 1.53005 * 109.47020 * 180.02562 * 14 13 12 16 16 C 1.50698 * 109.47266 * 179.97438 * 15 14 13 17 17 H 1.08011 * 119.99874 * 359.97438 * 16 15 14 18 18 C 1.37873 * 120.00453 * 180.02562 * 16 15 14 19 19 N 1.31519 * 119.99466 * 359.97438 * 18 16 15 20 20 Si 1.86794 * 120.00345 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.47587 * 59.99613 * 20 18 16 22 22 H 1.48498 * 109.47102 * 179.97438 * 20 18 16 23 23 H 1.48502 * 109.46892 * 299.99448 * 20 18 16 24 24 N 1.36457 * 126.46989 * 144.10723 * 9 8 7 25 25 C 1.46502 * 127.13447 * 359.97438 * 24 9 8 26 26 C 1.47901 * 105.82133 * 39.20817 * 8 7 5 27 27 C 1.53996 * 107.05586 * 334.66445 * 26 8 7 28 28 H 1.09003 * 110.30423 * 120.14418 * 27 26 8 29 29 C 1.52997 * 110.30842 * 242.30993 * 27 26 8 30 30 H 1.08999 * 109.47089 * 60.00484 * 1 2 3 31 31 H 1.09004 * 109.47639 * 300.00411 * 1 2 3 32 32 H 1.09005 * 109.47227 * 180.02562 * 1 2 3 33 33 H 1.08997 * 110.66361 * 322.66109 * 7 5 3 34 34 H 1.08996 * 110.66926 * 85.61786 * 7 5 3 35 35 H 1.08997 * 109.47020 * 29.94912 * 13 12 11 36 36 H 1.08997 * 109.47518 * 149.95517 * 13 12 11 37 37 H 1.09004 * 109.47166 * 299.99527 * 14 13 12 38 38 H 1.08998 * 109.47591 * 59.99461 * 14 13 12 39 39 H 1.08997 * 109.46767 * 299.99357 * 15 14 13 40 40 H 1.09002 * 109.47064 * 59.99853 * 15 14 13 41 41 H 0.96998 * 119.99531 * 180.02562 * 19 18 16 42 42 H 1.08999 * 109.46837 * 95.12705 * 25 24 9 43 43 H 1.08997 * 109.46795 * 215.12341 * 25 24 9 44 44 H 1.08997 * 109.47179 * 335.12427 * 25 24 9 45 45 H 1.08994 * 109.91865 * 94.02180 * 26 8 7 46 46 H 1.09004 * 109.91302 * 215.11645 * 26 8 7 47 47 H 1.09006 * 109.47197 * 175.71711 * 29 27 26 48 48 H 1.09000 * 109.47549 * 295.71676 * 29 27 26 49 49 H 1.08997 * 109.47173 * 55.72004 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 0.0006 6 1 3.9757 0.8118 -0.8973 7 6 4.1496 0.6122 1.2739 8 7 5.4702 1.2746 1.4271 9 6 5.9383 1.1544 2.7259 10 7 5.2163 1.1848 3.8212 11 7 5.9752 1.0401 4.8484 12 6 7.2171 0.9195 4.4731 13 6 8.4094 0.7374 5.3765 14 6 8.9753 2.1072 5.7565 15 6 10.1863 1.9223 6.6732 16 6 10.7440 3.2714 7.0470 17 1 10.2812 4.1709 6.6683 18 6 11.8456 3.3577 7.8716 19 7 12.4094 2.2624 8.3323 20 14 12.5364 5.0300 8.3355 21 1 11.4952 5.8165 9.0445 22 1 13.7119 4.8506 9.2251 23 1 12.9512 5.7526 7.1062 24 7 7.2378 0.9880 3.1076 25 6 8.4115 0.9004 2.2353 26 6 5.2533 2.6936 1.0711 27 6 4.0372 2.7418 0.1275 28 1 3.2475 3.3566 0.5594 29 6 4.4484 3.2880 -1.2412 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 0.5139 0.8899 32 1 -0.3634 -1.0277 0.0005 33 1 3.5156 0.8138 2.1373 34 1 4.2693 -0.4613 1.1285 35 1 8.1041 0.2074 6.2787 36 1 9.1741 0.1599 4.8570 37 1 9.2806 2.6372 4.8543 38 1 8.2107 2.6848 6.2760 39 1 9.8814 1.3922 7.5754 40 1 10.9508 1.3449 6.1532 41 1 13.1842 2.3231 8.9127 42 1 8.8712 1.8846 2.1449 43 1 9.1304 0.2015 2.6627 44 1 8.1061 0.5501 1.2494 45 1 5.0491 3.2750 1.9701 46 1 6.1348 3.0886 0.5660 47 1 3.5967 3.2452 -1.9203 48 1 4.7776 4.3217 -1.1360 49 1 5.2636 2.6861 -1.6426 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001339695852.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:19:54 Heat of formation + Delta-G solvation = -9.789464 kcal Electronic energy + Delta-G solvation = -29047.489651 eV Core-core repulsion = 25011.018598 eV Total energy + Delta-G solvation = -4036.471054 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.93507 -41.18233 -39.25508 -36.87946 -35.29233 -34.71123 -33.74278 -32.31907 -31.06914 -29.61628 -27.98731 -27.59690 -27.04500 -26.13188 -24.08501 -23.75802 -21.97490 -20.97076 -20.79618 -20.18141 -20.06458 -18.33266 -17.54597 -16.99193 -16.68551 -16.39101 -16.18069 -15.99598 -15.36022 -14.59557 -14.49319 -14.37992 -14.09198 -13.93919 -13.87815 -13.65968 -13.45174 -13.29630 -12.85030 -12.57861 -12.54607 -12.41905 -12.27727 -12.00564 -11.60194 -11.52759 -11.48502 -11.36382 -11.23503 -11.15820 -10.92961 -10.85601 -10.82486 -10.60734 -10.49684 -10.06326 -9.79212 -9.56773 -9.30579 -9.15182 -8.59239 -8.37381 -6.02762 -4.05143 1.70909 1.76708 2.12773 2.35604 2.91637 3.32013 3.36602 3.39352 3.54563 3.88030 3.94729 4.32837 4.43148 4.53886 4.58081 4.69802 4.70852 4.72127 4.77945 4.83142 4.98341 5.07013 5.07372 5.13109 5.14073 5.30123 5.32611 5.33369 5.36823 5.43286 5.54080 5.59443 5.65273 5.80933 5.81852 5.87302 5.95789 6.00533 6.06809 6.15712 6.54794 6.58926 6.72679 7.00038 7.13132 7.30131 7.61994 7.75262 7.96173 8.38527 8.83878 9.01017 9.59041 11.08399 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.022499 B = 0.002023 C = 0.001962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1244.221071 B =13836.307079 C =14264.785698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.356 6.356 3 C 0.473 3.527 4 O -0.500 6.500 5 C -0.084 4.084 6 H 0.127 0.873 7 C 0.064 3.936 8 N -0.439 5.439 9 C 0.318 3.682 10 N -0.312 5.312 11 N -0.290 5.290 12 C 0.208 3.792 13 C -0.036 4.036 14 C -0.102 4.102 15 C 0.023 3.977 16 C -0.522 4.522 17 H 0.054 0.946 18 C 0.057 3.943 19 N -0.895 5.895 20 Si 0.892 3.108 21 H -0.276 1.276 22 H -0.287 1.287 23 H -0.277 1.277 24 N -0.466 5.466 25 C 0.078 3.922 26 C 0.047 3.953 27 C -0.088 4.088 28 H 0.101 0.899 29 C -0.142 4.142 30 H 0.063 0.937 31 H 0.065 0.935 32 H 0.103 0.897 33 H 0.079 0.921 34 H 0.101 0.899 35 H 0.098 0.902 36 H 0.079 0.921 37 H 0.045 0.955 38 H 0.057 0.943 39 H 0.020 0.980 40 H 0.017 0.983 41 H 0.261 0.739 42 H 0.081 0.919 43 H 0.091 0.909 44 H 0.094 0.906 45 H 0.062 0.938 46 H 0.093 0.907 47 H 0.059 0.941 48 H 0.064 0.936 49 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.794 -5.932 -23.235 29.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.272 6.272 3 C 0.315 3.685 4 O -0.387 6.387 5 C -0.104 4.104 6 H 0.145 0.855 7 C -0.063 4.063 8 N -0.164 5.164 9 C -0.039 4.039 10 N -0.157 5.157 11 N -0.130 5.130 12 C -0.059 4.059 13 C -0.076 4.076 14 C -0.141 4.141 15 C -0.014 4.014 16 C -0.560 4.560 17 H 0.072 0.928 18 C -0.144 4.144 19 N -0.534 5.534 20 Si 0.720 3.280 21 H -0.202 1.202 22 H -0.213 1.213 23 H -0.203 1.203 24 N -0.158 5.158 25 C -0.065 4.065 26 C -0.080 4.080 27 C -0.107 4.107 28 H 0.119 0.881 29 C -0.199 4.199 30 H 0.082 0.918 31 H 0.083 0.917 32 H 0.121 0.879 33 H 0.097 0.903 34 H 0.120 0.880 35 H 0.116 0.884 36 H 0.097 0.903 37 H 0.064 0.936 38 H 0.075 0.925 39 H 0.039 0.961 40 H 0.035 0.965 41 H 0.071 0.929 42 H 0.100 0.900 43 H 0.110 0.890 44 H 0.113 0.887 45 H 0.081 0.919 46 H 0.111 0.889 47 H 0.078 0.922 48 H 0.083 0.917 49 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -18.667 -5.850 -22.571 29.868 hybrid contribution 0.871 1.196 -0.143 1.486 sum -17.796 -4.655 -22.714 29.228 Atomic orbital electron populations 1.23316 0.75980 1.03937 1.02689 1.86514 1.23696 1.33108 1.83858 1.23366 0.91500 0.81501 0.72157 1.90679 1.66845 1.36324 1.44860 1.22062 0.87365 0.98993 1.01974 0.85528 1.23122 0.87590 0.99610 0.96009 1.61464 1.26731 1.13016 1.15162 1.22311 0.82814 1.06712 0.92019 1.74492 1.26517 1.20045 0.94618 1.74058 0.99050 1.18922 1.20971 1.25400 0.97763 1.01933 0.80789 1.20390 0.89394 1.01470 0.96359 1.21651 0.99780 0.92496 1.00172 1.19096 0.90982 0.97283 0.94043 1.21176 1.12694 0.92680 1.29447 0.92806 1.25008 0.96837 0.96508 0.96029 1.69948 1.22270 1.27206 1.33960 0.86658 0.78502 0.84434 0.78414 1.20203 1.21258 1.20307 1.46151 1.07747 1.54116 1.07824 1.22077 0.85678 1.04254 0.94512 1.23133 0.98685 0.86994 0.99181 1.22020 0.97506 0.93844 0.97355 0.88123 1.21836 1.01620 1.01489 0.94947 0.91828 0.91666 0.87880 0.90309 0.88029 0.88354 0.90262 0.93580 0.92458 0.96127 0.96463 0.92914 0.90004 0.89011 0.88690 0.91919 0.88872 0.92170 0.91731 0.91812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 10.56 101.05 1.07 1.27 16 2 O -0.36 -3.02 10.55 -39.24 -0.41 -3.44 16 3 C 0.47 4.46 7.26 36.00 0.26 4.72 16 4 O -0.50 -5.94 15.23 -18.75 -0.29 -6.22 16 5 C -0.08 -0.66 3.10 -89.91 -0.28 -0.94 16 6 H 0.13 0.73 7.87 -51.93 -0.41 0.32 16 7 C 0.06 0.62 5.87 -1.90 -0.01 0.61 16 8 N -0.44 -4.70 5.28 -170.55 -0.90 -5.60 16 9 C 0.32 4.53 6.55 -318.86 -2.09 2.44 16 10 N -0.31 -5.44 11.28 30.32 0.34 -5.09 16 11 N -0.29 -5.47 12.18 32.99 0.40 -5.07 16 12 C 0.21 3.45 7.32 -154.02 -1.13 2.32 16 13 C -0.04 -0.60 5.59 -27.88 -0.16 -0.75 16 14 C -0.10 -2.04 5.14 -26.73 -0.14 -2.17 16 15 C 0.02 0.57 4.97 -27.88 -0.14 0.43 16 16 C -0.52 -14.53 9.11 -34.44 -0.31 -14.84 16 17 H 0.05 1.47 7.74 -52.48 -0.41 1.06 16 18 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 19 N -0.89 -26.38 13.29 55.43 0.74 -25.64 16 20 Si 0.89 21.50 29.54 -169.99 -5.02 16.47 16 21 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 22 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 23 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 24 N -0.47 -6.46 3.21 -121.46 -0.39 -6.85 16 25 C 0.08 0.75 11.01 59.85 0.66 1.41 16 26 C 0.05 0.45 6.30 -2.75 -0.02 0.43 16 27 C -0.09 -0.72 2.96 -89.27 -0.26 -0.98 16 28 H 0.10 0.98 6.93 -51.93 -0.36 0.62 16 29 C -0.14 -0.87 8.89 37.16 0.33 -0.54 16 30 H 0.06 0.36 8.13 -51.93 -0.42 -0.07 16 31 H 0.06 0.42 8.13 -51.93 -0.42 0.00 16 32 H 0.10 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.08 0.93 7.23 -51.93 -0.38 0.56 16 34 H 0.10 0.88 8.14 -51.93 -0.42 0.45 16 35 H 0.10 1.62 8.14 -51.93 -0.42 1.20 16 36 H 0.08 1.13 7.38 -51.93 -0.38 0.75 16 37 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 39 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 40 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 41 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 42 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 43 H 0.09 0.80 7.41 -51.93 -0.38 0.41 16 44 H 0.09 0.73 8.11 -51.93 -0.42 0.31 16 45 H 0.06 0.74 7.75 -51.93 -0.40 0.33 16 46 H 0.09 0.76 7.69 -51.93 -0.40 0.36 16 47 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 48 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 49 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 LS Contribution 404.21 15.07 6.09 6.09 Total: -1.00 -34.52 404.21 -9.93 -44.45 By element: Atomic # 1 Polarization: 4.13 SS G_CDS: -8.17 Total: -4.04 kcal Atomic # 6 Polarization: -2.74 SS G_CDS: -2.31 Total: -5.05 kcal Atomic # 7 Polarization: -48.45 SS G_CDS: 0.19 Total: -48.26 kcal Atomic # 8 Polarization: -8.96 SS G_CDS: -0.70 Total: -9.66 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -34.52 -9.93 -44.45 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001339695852.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.657 kcal (2) G-P(sol) polarization free energy of solvation -34.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.447 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds