Wall clock time and date at job start Tue Mar 31 2020 19:19:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34223 * 117.00263 * 2 1 4 4 O 1.20829 * 119.99817 * 359.97438 * 3 2 1 5 5 C 1.50694 * 120.00551 * 179.97438 * 3 2 1 6 6 H 1.09003 * 110.64401 * 61.69681 * 5 3 2 7 7 C 1.54940 * 110.72551 * 298.54908 * 5 3 2 8 8 N 1.48533 * 103.22566 * 204.22280 * 7 5 3 9 9 C 1.38585 * 110.99506 * 159.71796 * 8 7 5 10 10 N 1.31218 * 126.47368 * 323.79387 * 9 8 7 11 11 N 1.28527 * 109.85512 * 179.82030 * 10 9 8 12 12 C 1.30294 * 110.05830 * 0.45816 * 11 10 9 13 13 C 1.50698 * 126.34958 * 179.76369 * 12 11 10 14 14 C 1.53003 * 109.46767 * 269.95556 * 13 12 11 15 15 C 1.53005 * 109.47020 * 180.02562 * 14 13 12 16 16 C 1.50698 * 109.47266 * 179.97438 * 15 14 13 17 17 H 1.08011 * 119.99874 * 359.97438 * 16 15 14 18 18 C 1.37873 * 120.00453 * 180.02562 * 16 15 14 19 19 N 1.31519 * 119.99466 * 359.97438 * 18 16 15 20 20 Si 1.86794 * 120.00345 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.47587 * 59.99613 * 20 18 16 22 22 H 1.48498 * 109.47102 * 179.97438 * 20 18 16 23 23 H 1.48502 * 109.46892 * 299.99448 * 20 18 16 24 24 N 1.36457 * 126.46989 * 144.10723 * 9 8 7 25 25 C 1.46502 * 127.13447 * 359.97438 * 24 9 8 26 26 C 1.47901 * 105.82133 * 39.20817 * 8 7 5 27 27 C 1.53996 * 107.05586 * 334.66445 * 26 8 7 28 28 H 1.09003 * 110.30423 * 120.14418 * 27 26 8 29 29 C 1.52997 * 110.30842 * 242.30993 * 27 26 8 30 30 H 1.08999 * 109.47089 * 60.00484 * 1 2 3 31 31 H 1.09004 * 109.47639 * 300.00411 * 1 2 3 32 32 H 1.09005 * 109.47227 * 180.02562 * 1 2 3 33 33 H 1.08997 * 110.66361 * 322.66109 * 7 5 3 34 34 H 1.08996 * 110.66926 * 85.61786 * 7 5 3 35 35 H 1.08997 * 109.47020 * 29.94912 * 13 12 11 36 36 H 1.08997 * 109.47518 * 149.95517 * 13 12 11 37 37 H 1.09004 * 109.47166 * 299.99527 * 14 13 12 38 38 H 1.08998 * 109.47591 * 59.99461 * 14 13 12 39 39 H 1.08997 * 109.46767 * 299.99357 * 15 14 13 40 40 H 1.09002 * 109.47064 * 59.99853 * 15 14 13 41 41 H 0.96998 * 119.99531 * 180.02562 * 19 18 16 42 42 H 1.08999 * 109.46837 * 95.12705 * 25 24 9 43 43 H 1.08997 * 109.46795 * 215.12341 * 25 24 9 44 44 H 1.08997 * 109.47179 * 335.12427 * 25 24 9 45 45 H 1.08994 * 109.91865 * 94.02180 * 26 8 7 46 46 H 1.09004 * 109.91302 * 215.11645 * 26 8 7 47 47 H 1.09006 * 109.47197 * 175.71711 * 29 27 26 48 48 H 1.09000 * 109.47549 * 295.71676 * 29 27 26 49 49 H 1.08997 * 109.47173 * 55.72004 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 0.0006 6 1 3.9757 0.8118 -0.8973 7 6 4.1496 0.6122 1.2739 8 7 5.4702 1.2746 1.4271 9 6 5.9383 1.1544 2.7259 10 7 5.2163 1.1848 3.8212 11 7 5.9752 1.0401 4.8484 12 6 7.2171 0.9195 4.4731 13 6 8.4094 0.7374 5.3765 14 6 8.9753 2.1072 5.7565 15 6 10.1863 1.9223 6.6732 16 6 10.7440 3.2714 7.0470 17 1 10.2812 4.1709 6.6683 18 6 11.8456 3.3577 7.8716 19 7 12.4094 2.2624 8.3323 20 14 12.5364 5.0300 8.3355 21 1 11.4952 5.8165 9.0445 22 1 13.7119 4.8506 9.2251 23 1 12.9512 5.7526 7.1062 24 7 7.2378 0.9880 3.1076 25 6 8.4115 0.9004 2.2353 26 6 5.2533 2.6936 1.0711 27 6 4.0372 2.7418 0.1275 28 1 3.2475 3.3566 0.5594 29 6 4.4484 3.2880 -1.2412 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 0.5139 0.8899 32 1 -0.3634 -1.0277 0.0005 33 1 3.5156 0.8138 2.1373 34 1 4.2693 -0.4613 1.1285 35 1 8.1041 0.2074 6.2787 36 1 9.1741 0.1599 4.8570 37 1 9.2806 2.6372 4.8543 38 1 8.2107 2.6848 6.2760 39 1 9.8814 1.3922 7.5754 40 1 10.9508 1.3449 6.1532 41 1 13.1842 2.3231 8.9127 42 1 8.8712 1.8846 2.1449 43 1 9.1304 0.2015 2.6627 44 1 8.1061 0.5501 1.2494 45 1 5.0491 3.2750 1.9701 46 1 6.1348 3.0886 0.5660 47 1 3.5967 3.2452 -1.9203 48 1 4.7776 4.3217 -1.1360 49 1 5.2636 2.6861 -1.6426 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001339695852.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:19:53 Heat of formation + Delta-G solvation = -28.711131 kcal Electronic energy + Delta-G solvation = -29048.310156 eV Core-core repulsion = 25011.018598 eV Total energy + Delta-G solvation = -4037.291559 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -44.11503 -41.92237 -40.04570 -37.62246 -36.78843 -35.91419 -34.92490 -34.01187 -31.80347 -31.07234 -28.83511 -28.47112 -28.32763 -26.92834 -25.56704 -24.92275 -22.72619 -22.51054 -21.82056 -21.52276 -20.87731 -19.11752 -18.51867 -18.27775 -17.74904 -17.62331 -17.23400 -16.92544 -16.55253 -16.16621 -15.68992 -15.50531 -15.15002 -14.87718 -14.61654 -14.42864 -14.34743 -14.23483 -14.02073 -13.81740 -13.58365 -13.23460 -13.22689 -13.16491 -12.95693 -12.76114 -12.65907 -12.60164 -12.43704 -12.14358 -12.10267 -11.88809 -11.84602 -11.72097 -11.64429 -11.50493 -11.41566 -11.26320 -11.10588 -10.52612 -10.38768 -9.80263 -8.18452 -6.28370 0.60441 0.96761 1.20798 1.40911 1.43240 1.51020 1.64138 1.65516 2.42087 2.64333 3.14995 3.17552 3.19567 3.35509 3.67671 3.77163 3.89321 3.93733 4.04038 4.09748 4.13918 4.27864 4.29184 4.30951 4.40292 4.41102 4.47038 4.56562 4.62201 4.67449 4.68151 4.69907 4.73498 4.81768 4.94125 4.98243 5.05059 5.05756 5.09444 5.17768 5.28885 5.29464 5.38864 5.43132 5.52709 5.75721 5.86869 6.07445 6.26961 6.59561 6.87212 7.40158 7.60996 8.92582 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.022499 B = 0.002023 C = 0.001962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1244.221071 B =13836.307079 C =14264.785698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.359 6.359 3 C 0.473 3.527 4 O -0.530 6.530 5 C -0.073 4.073 6 H 0.158 0.842 7 C 0.063 3.937 8 N -0.425 5.425 9 C 0.333 3.667 10 N -0.350 5.350 11 N -0.329 5.329 12 C 0.201 3.799 13 C -0.024 4.024 14 C -0.084 4.084 15 C 0.027 3.973 16 C -0.545 4.545 17 H 0.054 0.946 18 C 0.003 3.997 19 N -0.928 5.928 20 Si 0.959 3.041 21 H -0.273 1.273 22 H -0.282 1.282 23 H -0.266 1.266 24 N -0.461 5.461 25 C 0.068 3.932 26 C 0.049 3.951 27 C -0.083 4.083 28 H 0.079 0.921 29 C -0.136 4.136 30 H 0.067 0.933 31 H 0.056 0.944 32 H 0.132 0.868 33 H 0.052 0.948 34 H 0.116 0.884 35 H 0.093 0.907 36 H 0.105 0.895 37 H 0.054 0.946 38 H 0.038 0.962 39 H -0.004 1.004 40 H 0.008 0.992 41 H 0.264 0.736 42 H 0.089 0.911 43 H 0.104 0.896 44 H 0.120 0.880 45 H 0.034 0.966 46 H 0.115 0.885 47 H 0.060 0.940 48 H 0.067 0.933 49 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.173 -5.926 -25.851 31.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.275 6.275 3 C 0.317 3.683 4 O -0.419 6.419 5 C -0.092 4.092 6 H 0.176 0.824 7 C -0.064 4.064 8 N -0.150 5.150 9 C -0.025 4.025 10 N -0.194 5.194 11 N -0.169 5.169 12 C -0.068 4.068 13 C -0.063 4.063 14 C -0.123 4.123 15 C -0.010 4.010 16 C -0.583 4.583 17 H 0.072 0.928 18 C -0.195 4.195 19 N -0.568 5.568 20 Si 0.784 3.216 21 H -0.198 1.198 22 H -0.207 1.207 23 H -0.191 1.191 24 N -0.153 5.153 25 C -0.073 4.073 26 C -0.078 4.078 27 C -0.102 4.102 28 H 0.097 0.903 29 C -0.193 4.193 30 H 0.086 0.914 31 H 0.075 0.925 32 H 0.150 0.850 33 H 0.070 0.930 34 H 0.134 0.866 35 H 0.111 0.889 36 H 0.123 0.877 37 H 0.073 0.927 38 H 0.057 0.943 39 H 0.015 0.985 40 H 0.027 0.973 41 H 0.073 0.927 42 H 0.108 0.892 43 H 0.123 0.877 44 H 0.138 0.862 45 H 0.053 0.947 46 H 0.133 0.867 47 H 0.079 0.921 48 H 0.086 0.914 49 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -18.047 -5.855 -25.208 31.550 hybrid contribution 0.607 1.158 0.627 1.450 sum -17.440 -4.697 -24.581 30.503 Atomic orbital electron populations 1.23572 0.74697 1.05815 1.02522 1.86508 1.25039 1.32527 1.83417 1.23647 0.92079 0.81333 0.71261 1.90671 1.67594 1.37291 1.46359 1.22094 0.86360 0.98650 1.02144 0.82406 1.23145 0.86742 1.00561 0.95962 1.61713 1.27050 1.13719 1.12528 1.22654 0.82876 1.04333 0.92591 1.74419 1.27480 1.22054 0.95411 1.73957 1.00311 1.20172 1.22430 1.25185 0.97014 1.02564 0.82058 1.20169 0.90016 0.99407 0.96742 1.21339 0.97275 0.94564 0.99133 1.18981 0.92463 0.95655 0.93885 1.21624 1.13053 0.93920 1.29666 0.92799 1.25880 0.97253 1.00378 0.95963 1.70063 1.22774 1.29377 1.34583 0.85596 0.77790 0.79777 0.78464 1.19814 1.20709 1.19076 1.46334 1.08667 1.53057 1.07245 1.22463 0.84544 1.05271 0.95012 1.23193 1.00264 0.85833 0.98480 1.21951 0.96168 0.93949 0.98154 0.90271 1.21810 1.02222 1.01926 0.93337 0.91389 0.92503 0.85031 0.92963 0.86596 0.88861 0.87661 0.92721 0.94300 0.98548 0.97348 0.92746 0.89233 0.87741 0.86196 0.94702 0.86729 0.92074 0.91385 0.90018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 10.56 113.37 1.20 1.50 16 2 O -0.36 -5.69 10.55 -51.35 -0.54 -6.23 16 3 C 0.47 8.54 7.26 71.23 0.52 9.06 16 4 O -0.53 -12.58 15.23 21.95 0.33 -12.24 16 5 C -0.07 -1.01 3.10 -10.34 -0.03 -1.04 16 6 H 0.16 1.23 7.87 -2.39 -0.02 1.21 16 7 C 0.06 1.15 5.87 86.65 0.51 1.65 16 8 N -0.42 -8.37 5.28 -693.49 -3.66 -12.04 16 9 C 0.33 9.22 6.55 260.11 1.70 10.92 16 10 N -0.35 -12.40 11.28 -58.00 -0.65 -13.05 16 11 N -0.33 -12.65 12.18 -49.54 -0.60 -13.26 16 12 C 0.20 6.57 7.32 137.64 1.01 7.58 16 13 C -0.02 -0.77 5.59 29.85 0.17 -0.60 16 14 C -0.08 -3.37 5.14 30.60 0.16 -3.21 16 15 C 0.03 1.37 4.97 29.85 0.15 1.52 16 16 C -0.54 -30.52 9.11 25.60 0.23 -30.29 16 17 H 0.05 2.94 7.74 -2.90 -0.02 2.92 16 18 C 0.00 0.20 5.46 84.65 0.46 0.66 16 19 N -0.93 -55.14 13.29 21.45 0.28 -54.85 16 20 Si 0.96 43.89 29.54 68.60 2.03 45.91 16 21 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 22 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 23 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 24 N -0.46 -12.11 3.21 -538.18 -1.73 -13.83 16 25 C 0.07 1.11 11.01 127.77 1.41 2.52 16 26 C 0.05 0.87 6.30 86.45 0.54 1.42 16 27 C -0.08 -1.24 2.96 -9.92 -0.03 -1.27 16 28 H 0.08 1.56 6.93 -2.39 -0.02 1.55 16 29 C -0.14 -1.32 8.89 71.98 0.64 -0.68 16 30 H 0.07 0.70 8.13 -2.39 -0.02 0.68 16 31 H 0.06 0.73 8.13 -2.39 -0.02 0.71 16 32 H 0.13 0.66 8.14 -2.38 -0.02 0.64 16 33 H 0.05 1.26 7.23 -2.39 -0.02 1.24 16 34 H 0.12 1.77 8.14 -2.39 -0.02 1.75 16 35 H 0.09 3.11 8.14 -2.39 -0.02 3.09 16 36 H 0.11 2.83 7.38 -2.39 -0.02 2.81 16 37 H 0.05 2.07 8.14 -2.38 -0.02 2.05 16 38 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 39 H 0.00 -0.21 8.14 -2.39 -0.02 -0.23 16 40 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 41 H 0.26 14.79 8.31 -92.71 -0.77 14.02 16 42 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 43 H 0.10 1.48 7.41 -2.39 -0.02 1.46 16 44 H 0.12 1.38 8.11 -2.39 -0.02 1.36 16 45 H 0.03 0.82 7.75 -2.39 -0.02 0.81 16 46 H 0.11 1.56 7.69 -2.39 -0.02 1.54 16 47 H 0.06 0.62 8.14 -2.38 -0.02 0.60 16 48 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 49 H 0.08 0.53 8.14 -2.39 -0.02 0.51 16 Total: -1.00 -76.43 404.21 5.02 -71.41 By element: Atomic # 1 Polarization: 7.50 SS G_CDS: 0.93 Total: 8.43 kcal Atomic # 6 Polarization: -8.88 SS G_CDS: 8.63 Total: -0.25 kcal Atomic # 7 Polarization: -100.67 SS G_CDS: -6.36 Total: -107.03 kcal Atomic # 8 Polarization: -18.27 SS G_CDS: -0.21 Total: -18.47 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 2.03 Total: 45.91 kcal Total: -76.43 5.02 -71.41 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001339695852.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.695 kcal (2) G-P(sol) polarization free energy of solvation -76.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.406 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds