Wall clock time and date at job start Tue Mar 31 2020 19:25:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50700 * 119.99903 * 2 1 4 4 C 1.50697 * 120.00150 * 180.02562 * 2 1 3 5 5 N 1.46503 * 109.47432 * 94.13483 * 4 2 1 6 6 C 1.36734 * 127.13220 * 87.51994 * 5 4 2 7 7 C 1.50700 * 126.35206 * 359.96100 * 6 5 4 8 8 C 1.53003 * 109.46821 * 96.07389 * 7 6 5 9 9 H 1.09007 * 109.46705 * 54.17322 * 8 7 6 10 10 O 1.42900 * 109.47117 * 294.17897 * 8 7 6 11 11 C 1.50696 * 109.47191 * 174.17525 * 8 7 6 12 12 H 1.08005 * 119.99687 * 0.02562 * 11 8 7 13 13 C 1.37874 * 120.00143 * 180.02562 * 11 8 7 14 14 N 1.31515 * 120.00029 * 359.97438 * 13 11 8 15 15 Si 1.86804 * 120.00054 * 180.02562 * 13 11 8 16 16 H 1.48498 * 109.47407 * 89.99413 * 15 13 11 17 17 H 1.48496 * 109.46889 * 209.99395 * 15 13 11 18 18 H 1.48496 * 109.46935 * 329.99163 * 15 13 11 19 19 N 1.30304 * 107.30227 * 179.83690 * 6 5 4 20 20 N 1.28528 * 110.05210 * 0.44067 * 19 6 5 21 21 C 1.31225 * 109.86075 * 359.72004 * 20 19 6 22 22 N 1.38583 * 126.47138 * 180.02562 * 21 20 19 23 23 C 1.47012 * 110.99555 * 106.19548 * 22 21 20 24 24 C 1.53105 * 109.25539 * 177.60556 * 23 22 21 25 25 O 1.43010 * 109.25777 * 56.84609 * 24 23 22 26 26 C 1.43018 * 113.74067 * 301.33168 * 25 24 23 27 27 H 1.09004 * 109.54091 * 298.71031 * 26 25 24 28 28 C 1.53000 * 109.50840 * 178.60508 * 26 25 24 29 29 C 1.47008 * 111.00254 * 342.55807 * 22 21 20 30 30 H 1.08002 * 119.99945 * 5.05882 * 1 2 3 31 31 H 1.07995 * 120.00080 * 185.05565 * 1 2 3 32 32 H 1.09000 * 109.46920 * 264.93611 * 3 2 1 33 33 H 1.09003 * 109.47508 * 144.93961 * 3 2 1 34 34 H 1.09001 * 109.47630 * 24.93506 * 3 2 1 35 35 H 1.09000 * 109.47392 * 214.13754 * 4 2 1 36 36 H 1.09006 * 109.47067 * 334.13427 * 4 2 1 37 37 H 1.08992 * 109.47258 * 216.07586 * 7 6 5 38 38 H 1.08994 * 109.47132 * 336.07939 * 7 6 5 39 39 H 0.96699 * 113.99822 * 304.40021 * 10 8 7 40 40 H 0.97002 * 120.00167 * 180.02562 * 14 13 11 41 41 H 1.09003 * 109.50956 * 297.53411 * 23 22 21 42 42 H 1.09000 * 109.51005 * 57.67439 * 23 22 21 43 43 H 1.09001 * 109.50595 * 296.91465 * 24 23 22 44 44 H 1.08992 * 109.54192 * 176.80426 * 24 23 22 45 45 H 1.08991 * 109.47245 * 300.21540 * 28 26 25 46 46 H 1.08996 * 109.47037 * 60.21983 * 28 26 25 47 47 H 1.09004 * 109.46818 * 180.21536 * 28 26 25 48 48 H 1.09003 * 109.50677 * 302.32628 * 29 22 21 49 49 H 1.08999 * 109.50749 * 62.41114 * 29 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0636 -1.3051 -0.0006 5 7 2.3940 -1.6776 -1.3784 6 6 3.4997 -1.3053 -2.0915 7 6 4.6213 -0.4241 -1.6053 8 6 5.7701 -1.2960 -1.0946 9 1 6.0627 -2.0028 -1.8712 10 8 5.3445 -2.0129 0.0660 11 6 6.9459 -0.4218 -0.7420 12 1 6.8801 0.6487 -0.8690 13 6 8.1055 -0.9886 -0.2572 14 7 8.1854 -2.2921 -0.1021 15 14 9.5627 0.0952 0.1805 16 1 9.4633 0.5072 1.6037 17 1 10.8230 -0.6618 -0.0288 18 1 9.5602 1.3015 -0.6854 19 7 3.4051 -1.8560 -3.2687 20 7 2.3187 -2.5380 -3.3502 21 6 1.6594 -2.4632 -2.2180 22 7 0.4465 -3.0684 -1.9296 23 6 0.6309 -4.2139 -1.0268 24 6 -0.7359 -4.8145 -0.6875 25 8 -1.4038 -5.1809 -1.8978 26 6 -1.6005 -4.0889 -2.8002 27 1 -2.2238 -3.3313 -2.3253 28 6 -2.2880 -4.5933 -4.0705 29 6 -0.2424 -3.4810 -3.1609 30 1 -0.5400 0.9317 -0.0825 31 1 -0.5400 -0.9316 0.0824 32 1 2.3237 1.5744 -1.0237 33 1 2.9737 1.1993 0.5903 34 1 1.4382 2.0858 0.4332 35 1 2.9819 -1.1947 0.5762 36 1 1.4444 -2.0823 0.4474 37 1 4.9754 0.1994 -2.4261 38 1 4.2599 0.2109 -0.7965 39 1 5.0057 -1.4487 0.7745 40 1 9.0011 -2.6908 0.2393 41 1 1.2481 -4.9674 -1.5162 42 1 1.1195 -3.8809 -0.1112 43 1 -1.3338 -4.0781 -0.1505 44 1 -0.6012 -5.6984 -0.0642 45 1 -1.6650 -5.3519 -4.5441 46 1 -3.2548 -5.0259 -3.8131 47 1 -2.4342 -3.7612 -4.7594 48 1 -0.3913 -2.6129 -3.8031 49 1 0.3612 -4.2221 -3.6849 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001342011055.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:25:58 Heat of formation + Delta-G solvation = 9.528184 kcal Electronic energy + Delta-G solvation = -30888.134735 eV Core-core repulsion = 26852.501358 eV Total energy + Delta-G solvation = -4035.633377 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.65037 -39.85886 -36.92958 -36.34213 -35.74757 -33.34039 -32.96341 -32.21442 -31.39686 -29.31061 -27.74946 -27.52713 -26.89608 -25.94249 -25.30407 -23.27754 -21.86832 -21.25220 -20.56692 -20.03275 -18.76203 -17.42226 -17.02069 -16.68257 -16.24693 -16.11839 -15.47671 -15.29073 -14.85634 -14.70739 -14.63334 -14.46295 -14.36431 -13.94936 -13.80576 -13.25512 -13.14165 -12.93971 -12.72018 -12.57378 -12.26648 -12.07088 -12.01280 -11.75248 -11.62330 -11.44455 -11.30838 -11.15444 -11.07354 -10.92406 -10.84069 -10.79264 -10.33424 -10.15518 -9.91030 -9.80681 -9.52061 -9.33082 -9.12020 -8.63921 -8.45840 -7.94652 -6.06722 -4.26452 1.77927 2.10023 2.68556 3.23741 3.24703 3.32069 3.34712 3.45391 3.71357 4.33450 4.45213 4.54171 4.58484 4.62908 4.73005 4.86528 4.92387 4.98502 5.06224 5.09756 5.19478 5.25751 5.32321 5.37085 5.41681 5.42793 5.47388 5.56735 5.60921 5.61958 5.70424 5.71775 5.81573 5.89615 5.95502 6.08480 6.15122 6.25070 6.30810 6.39420 6.54126 6.61340 6.68414 6.86626 6.90206 7.41135 7.62859 7.76300 8.06223 8.73943 9.18483 9.21038 9.49594 10.97491 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.017031 B = 0.003185 C = 0.002990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1643.653600 B = 8788.336045 C = 9361.135996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.149 4.149 3 C -0.121 4.121 4 C 0.148 3.852 5 N -0.460 5.460 6 C 0.225 3.775 7 C -0.067 4.067 8 C 0.238 3.762 9 H 0.065 0.935 10 O -0.561 6.561 11 C -0.573 4.573 12 H 0.059 0.941 13 C 0.081 3.919 14 N -0.856 5.856 15 Si 0.891 3.109 16 H -0.280 1.280 17 H -0.285 1.285 18 H -0.272 1.272 19 N -0.297 5.297 20 N -0.319 5.319 21 C 0.330 3.670 22 N -0.451 5.451 23 C 0.016 3.984 24 C 0.070 3.930 25 O -0.380 6.380 26 C 0.090 3.910 27 H 0.068 0.932 28 C -0.144 4.144 29 C 0.043 3.957 30 H 0.100 0.900 31 H 0.101 0.899 32 H 0.067 0.933 33 H 0.073 0.927 34 H 0.064 0.936 35 H 0.105 0.895 36 H 0.094 0.906 37 H 0.096 0.904 38 H 0.074 0.926 39 H 0.336 0.664 40 H 0.261 0.739 41 H 0.059 0.941 42 H 0.088 0.912 43 H 0.061 0.939 44 H 0.105 0.895 45 H 0.066 0.934 46 H 0.067 0.933 47 H 0.074 0.926 48 H 0.092 0.908 49 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.440 0.650 1.534 21.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.150 4.150 3 C -0.178 4.178 4 C 0.025 3.975 5 N -0.153 5.153 6 C -0.042 4.042 7 C -0.107 4.107 8 C 0.179 3.821 9 H 0.083 0.917 10 O -0.363 6.363 11 C -0.611 4.611 12 H 0.077 0.923 13 C -0.126 4.126 14 N -0.491 5.491 15 Si 0.718 3.282 16 H -0.206 1.206 17 H -0.211 1.211 18 H -0.197 1.197 19 N -0.136 5.136 20 N -0.163 5.163 21 C -0.026 4.026 22 N -0.175 5.175 23 C -0.111 4.111 24 C -0.007 4.007 25 O -0.299 6.299 26 C 0.032 3.968 27 H 0.086 0.914 28 C -0.201 4.201 29 C -0.085 4.085 30 H 0.118 0.882 31 H 0.120 0.880 32 H 0.086 0.914 33 H 0.091 0.909 34 H 0.083 0.917 35 H 0.124 0.876 36 H 0.113 0.887 37 H 0.114 0.886 38 H 0.092 0.908 39 H 0.179 0.821 40 H 0.071 0.929 41 H 0.077 0.923 42 H 0.106 0.894 43 H 0.079 0.921 44 H 0.123 0.877 45 H 0.085 0.915 46 H 0.086 0.914 47 H 0.093 0.907 48 H 0.110 0.890 49 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -21.143 -0.287 -0.014 21.145 hybrid contribution 0.992 1.175 1.649 2.255 sum -20.151 0.888 1.635 20.237 Atomic orbital electron populations 1.23799 0.95001 1.02197 0.98664 1.21880 0.95658 0.95403 1.02036 1.20930 1.00417 0.93820 1.02627 1.20806 1.01616 0.94954 0.80091 1.46108 1.18216 1.37864 1.13162 1.25270 0.89685 1.00615 0.88637 1.21286 0.91448 0.96436 1.01500 1.19439 0.87171 0.90416 0.85035 0.91719 1.86698 1.84761 1.37690 1.27173 1.21547 0.98667 0.93619 1.47261 0.92283 1.25030 0.98293 0.94780 0.94453 1.70079 1.27027 1.09640 1.42380 0.86643 0.82125 0.80666 0.78777 1.20561 1.21088 1.19696 1.74006 1.11701 1.11185 1.16702 1.74500 1.02339 1.20066 1.19379 1.22223 0.92275 0.98932 0.89197 1.58874 1.14202 1.27591 1.16869 1.23002 0.99174 0.91574 0.97386 1.22631 0.90721 1.00416 0.86938 1.88009 1.78277 1.34263 1.29350 1.22225 0.94479 0.88793 0.91298 0.91439 1.21735 1.00880 1.02248 0.95282 1.22736 0.94606 1.01447 0.89707 0.88152 0.88023 0.91395 0.90859 0.91660 0.87648 0.88738 0.88588 0.90768 0.82061 0.92893 0.92286 0.89357 0.92090 0.87750 0.91512 0.91429 0.90709 0.88952 0.91631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.57 13.88 29.01 0.40 -1.17 16 2 C -0.15 -1.68 5.64 -101.07 -0.57 -2.25 16 3 C -0.12 -1.31 8.96 36.01 0.32 -0.99 16 4 C 0.15 1.90 5.91 -5.19 -0.03 1.87 16 5 N -0.46 -7.60 2.79 -115.36 -0.32 -7.92 16 6 C 0.23 4.43 7.11 -154.01 -1.09 3.34 16 7 C -0.07 -1.30 5.11 -27.88 -0.14 -1.44 16 8 C 0.24 5.78 2.81 -27.88 -0.08 5.70 16 9 H 0.07 1.85 8.14 -51.93 -0.42 1.43 16 10 O -0.56 -13.41 12.22 -35.23 -0.43 -13.84 16 11 C -0.57 -14.95 8.78 -34.44 -0.30 -15.26 16 12 H 0.06 1.47 7.74 -52.48 -0.41 1.07 16 13 C 0.08 2.21 5.40 -17.82 -0.10 2.11 16 14 N -0.86 -24.86 12.84 55.43 0.71 -24.15 16 15 Si 0.89 20.57 29.54 -169.99 -5.02 15.54 16 16 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 17 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 18 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 19 N -0.30 -6.55 12.18 32.99 0.40 -6.15 16 20 N -0.32 -6.47 11.39 30.32 0.35 -6.12 16 21 C 0.33 5.60 6.94 -318.86 -2.21 3.39 16 22 N -0.45 -5.96 4.74 -174.21 -0.83 -6.78 16 23 C 0.02 0.19 5.47 -3.71 -0.02 0.17 16 24 C 0.07 0.65 7.01 37.21 0.26 0.91 16 25 O -0.38 -4.16 10.47 -35.23 -0.37 -4.53 16 26 C 0.09 0.88 3.43 -26.68 -0.09 0.79 16 27 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 28 C -0.14 -1.13 9.57 37.16 0.36 -0.78 16 29 C 0.04 0.52 4.39 -3.72 -0.02 0.50 16 30 H 0.10 0.87 8.02 -52.49 -0.42 0.45 16 31 H 0.10 0.96 7.98 -52.49 -0.42 0.54 16 32 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.07 0.79 7.51 -51.93 -0.39 0.40 16 34 H 0.06 0.59 8.01 -51.93 -0.42 0.17 16 35 H 0.11 1.38 6.30 -51.93 -0.33 1.05 16 36 H 0.09 1.06 6.08 -51.93 -0.32 0.74 16 37 H 0.10 1.88 8.14 -51.93 -0.42 1.46 16 38 H 0.07 1.25 5.85 -51.93 -0.30 0.95 16 39 H 0.34 6.77 7.83 45.56 0.36 7.12 16 40 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 41 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 42 H 0.09 0.99 6.33 -51.93 -0.33 0.66 16 43 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 44 H 0.10 0.78 8.14 -51.93 -0.42 0.35 16 45 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 46 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 47 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 48 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 49 H 0.07 0.92 8.02 -51.93 -0.42 0.50 16 LS Contribution 395.43 15.07 5.96 5.96 Total: -1.00 -33.19 395.43 -10.04 -43.23 By element: Atomic # 1 Polarization: 15.03 SS G_CDS: -7.17 Total: 7.85 kcal Atomic # 6 Polarization: 0.22 SS G_CDS: -3.31 Total: -3.09 kcal Atomic # 7 Polarization: -51.43 SS G_CDS: 0.31 Total: -51.12 kcal Atomic # 8 Polarization: -17.57 SS G_CDS: -0.80 Total: -18.37 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.54 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -33.19 -10.04 -43.23 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001342011055.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.758 kcal (2) G-P(sol) polarization free energy of solvation -33.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.230 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds