Wall clock time and date at job start Tue Mar 31 2020 19:25:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50700 * 119.99903 * 2 1 4 4 C 1.50697 * 120.00150 * 180.02562 * 2 1 3 5 5 N 1.46503 * 109.47432 * 94.13483 * 4 2 1 6 6 C 1.36734 * 127.13220 * 87.51994 * 5 4 2 7 7 C 1.50700 * 126.35206 * 359.96100 * 6 5 4 8 8 C 1.53003 * 109.46821 * 96.07389 * 7 6 5 9 9 H 1.09007 * 109.46705 * 54.17322 * 8 7 6 10 10 O 1.42900 * 109.47117 * 294.17897 * 8 7 6 11 11 C 1.50696 * 109.47191 * 174.17525 * 8 7 6 12 12 H 1.08005 * 119.99687 * 0.02562 * 11 8 7 13 13 C 1.37874 * 120.00143 * 180.02562 * 11 8 7 14 14 N 1.31515 * 120.00029 * 359.97438 * 13 11 8 15 15 Si 1.86804 * 120.00054 * 180.02562 * 13 11 8 16 16 H 1.48498 * 109.47407 * 89.99413 * 15 13 11 17 17 H 1.48496 * 109.46889 * 209.99395 * 15 13 11 18 18 H 1.48496 * 109.46935 * 329.99163 * 15 13 11 19 19 N 1.30304 * 107.30227 * 179.83690 * 6 5 4 20 20 N 1.28528 * 110.05210 * 0.44067 * 19 6 5 21 21 C 1.31225 * 109.86075 * 359.72004 * 20 19 6 22 22 N 1.38583 * 126.47138 * 180.02562 * 21 20 19 23 23 C 1.47012 * 110.99555 * 106.19548 * 22 21 20 24 24 C 1.53105 * 109.25539 * 177.60556 * 23 22 21 25 25 O 1.43010 * 109.25777 * 56.84609 * 24 23 22 26 26 C 1.43018 * 113.74067 * 301.33168 * 25 24 23 27 27 H 1.09004 * 109.54091 * 298.71031 * 26 25 24 28 28 C 1.53000 * 109.50840 * 178.60508 * 26 25 24 29 29 C 1.47008 * 111.00254 * 342.55807 * 22 21 20 30 30 H 1.08002 * 119.99945 * 5.05882 * 1 2 3 31 31 H 1.07995 * 120.00080 * 185.05565 * 1 2 3 32 32 H 1.09000 * 109.46920 * 264.93611 * 3 2 1 33 33 H 1.09003 * 109.47508 * 144.93961 * 3 2 1 34 34 H 1.09001 * 109.47630 * 24.93506 * 3 2 1 35 35 H 1.09000 * 109.47392 * 214.13754 * 4 2 1 36 36 H 1.09006 * 109.47067 * 334.13427 * 4 2 1 37 37 H 1.08992 * 109.47258 * 216.07586 * 7 6 5 38 38 H 1.08994 * 109.47132 * 336.07939 * 7 6 5 39 39 H 0.96699 * 113.99822 * 304.40021 * 10 8 7 40 40 H 0.97002 * 120.00167 * 180.02562 * 14 13 11 41 41 H 1.09003 * 109.50956 * 297.53411 * 23 22 21 42 42 H 1.09000 * 109.51005 * 57.67439 * 23 22 21 43 43 H 1.09001 * 109.50595 * 296.91465 * 24 23 22 44 44 H 1.08992 * 109.54192 * 176.80426 * 24 23 22 45 45 H 1.08991 * 109.47245 * 300.21540 * 28 26 25 46 46 H 1.08996 * 109.47037 * 60.21983 * 28 26 25 47 47 H 1.09004 * 109.46818 * 180.21536 * 28 26 25 48 48 H 1.09003 * 109.50677 * 302.32628 * 29 22 21 49 49 H 1.08999 * 109.50749 * 62.41114 * 29 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0636 -1.3051 -0.0006 5 7 2.3940 -1.6776 -1.3784 6 6 3.4997 -1.3053 -2.0915 7 6 4.6213 -0.4241 -1.6053 8 6 5.7701 -1.2960 -1.0946 9 1 6.0627 -2.0028 -1.8712 10 8 5.3445 -2.0129 0.0660 11 6 6.9459 -0.4218 -0.7420 12 1 6.8801 0.6487 -0.8690 13 6 8.1055 -0.9886 -0.2572 14 7 8.1854 -2.2921 -0.1021 15 14 9.5627 0.0952 0.1805 16 1 9.4633 0.5072 1.6037 17 1 10.8230 -0.6618 -0.0288 18 1 9.5602 1.3015 -0.6854 19 7 3.4051 -1.8560 -3.2687 20 7 2.3187 -2.5380 -3.3502 21 6 1.6594 -2.4632 -2.2180 22 7 0.4465 -3.0684 -1.9296 23 6 0.6309 -4.2139 -1.0268 24 6 -0.7359 -4.8145 -0.6875 25 8 -1.4038 -5.1809 -1.8978 26 6 -1.6005 -4.0889 -2.8002 27 1 -2.2238 -3.3313 -2.3253 28 6 -2.2880 -4.5933 -4.0705 29 6 -0.2424 -3.4810 -3.1609 30 1 -0.5400 0.9317 -0.0825 31 1 -0.5400 -0.9316 0.0824 32 1 2.3237 1.5744 -1.0237 33 1 2.9737 1.1993 0.5903 34 1 1.4382 2.0858 0.4332 35 1 2.9819 -1.1947 0.5762 36 1 1.4444 -2.0823 0.4474 37 1 4.9754 0.1994 -2.4261 38 1 4.2599 0.2109 -0.7965 39 1 5.0057 -1.4487 0.7745 40 1 9.0011 -2.6908 0.2393 41 1 1.2481 -4.9674 -1.5162 42 1 1.1195 -3.8809 -0.1112 43 1 -1.3338 -4.0781 -0.1505 44 1 -0.6012 -5.6984 -0.0642 45 1 -1.6650 -5.3519 -4.5441 46 1 -3.2548 -5.0259 -3.8131 47 1 -2.4342 -3.7612 -4.7594 48 1 -0.3913 -2.6129 -3.8031 49 1 0.3612 -4.2221 -3.6849 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001342011055.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:25:57 Heat of formation + Delta-G solvation = -12.187885 kcal Electronic energy + Delta-G solvation = -30889.076415 eV Core-core repulsion = 26852.501358 eV Total energy + Delta-G solvation = -4036.575057 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -44.06569 -40.78973 -38.28213 -37.73881 -36.94205 -34.47968 -34.26482 -33.82998 -32.97501 -30.51099 -29.13021 -28.44128 -27.90274 -27.19717 -26.86187 -24.20562 -23.59697 -22.39022 -21.88294 -21.25245 -19.79096 -19.12511 -18.36303 -17.66080 -17.42903 -17.26906 -16.66979 -16.59029 -16.38000 -16.01350 -15.82473 -15.64382 -15.45247 -15.41298 -15.04464 -14.74637 -14.42495 -14.10929 -13.75161 -13.29442 -13.24496 -13.18087 -13.10326 -12.93394 -12.85553 -12.79693 -12.66797 -12.60654 -12.50420 -12.28268 -12.20316 -12.03774 -11.78912 -11.56135 -11.33966 -11.08387 -10.85518 -10.71325 -10.60130 -10.22831 -10.15991 -9.44337 -8.13350 -6.39803 0.69106 0.84093 1.42324 1.44478 1.54614 1.56257 1.75465 2.40176 2.54212 2.73387 3.13180 3.38505 3.55479 3.63863 3.67978 3.72608 3.83803 3.92824 4.02634 4.10935 4.13278 4.21194 4.23051 4.39803 4.44273 4.48754 4.51280 4.59672 4.65706 4.66790 4.73834 4.77140 4.83294 4.87941 4.91984 4.94702 5.02577 5.04646 5.14009 5.27914 5.39335 5.50153 5.58400 5.60943 5.69720 5.80996 6.02075 6.12894 6.13419 6.71166 7.31847 7.49888 7.71418 8.91446 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.017031 B = 0.003185 C = 0.002990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1643.653600 B = 8788.336045 C = 9361.135996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.169 4.169 3 C -0.120 4.120 4 C 0.141 3.859 5 N -0.453 5.453 6 C 0.214 3.786 7 C -0.047 4.047 8 C 0.245 3.755 9 H 0.010 0.990 10 O -0.574 6.574 11 C -0.580 4.580 12 H 0.071 0.929 13 C 0.026 3.974 14 N -0.901 5.901 15 Si 0.961 3.039 16 H -0.269 1.269 17 H -0.290 1.290 18 H -0.262 1.262 19 N -0.339 5.339 20 N -0.357 5.357 21 C 0.344 3.656 22 N -0.437 5.437 23 C 0.015 3.985 24 C 0.075 3.925 25 O -0.394 6.394 26 C 0.097 3.903 27 H 0.086 0.914 28 C -0.142 4.142 29 C 0.043 3.957 30 H 0.117 0.883 31 H 0.110 0.890 32 H 0.051 0.949 33 H 0.069 0.931 34 H 0.085 0.915 35 H 0.102 0.898 36 H 0.113 0.887 37 H 0.092 0.908 38 H 0.103 0.897 39 H 0.354 0.646 40 H 0.260 0.740 41 H 0.032 0.968 42 H 0.096 0.904 43 H 0.084 0.916 44 H 0.125 0.875 45 H 0.054 0.946 46 H 0.080 0.920 47 H 0.088 0.912 48 H 0.089 0.911 49 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.854 2.109 3.374 24.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.170 4.170 3 C -0.177 4.177 4 C 0.020 3.980 5 N -0.145 5.145 6 C -0.055 4.055 7 C -0.087 4.087 8 C 0.187 3.813 9 H 0.028 0.972 10 O -0.378 6.378 11 C -0.618 4.618 12 H 0.089 0.911 13 C -0.177 4.177 14 N -0.538 5.538 15 Si 0.786 3.214 16 H -0.194 1.194 17 H -0.216 1.216 18 H -0.186 1.186 19 N -0.178 5.178 20 N -0.201 5.201 21 C -0.014 4.014 22 N -0.162 5.162 23 C -0.112 4.112 24 C -0.002 4.002 25 O -0.313 6.313 26 C 0.039 3.961 27 H 0.103 0.897 28 C -0.199 4.199 29 C -0.085 4.085 30 H 0.135 0.865 31 H 0.128 0.872 32 H 0.070 0.930 33 H 0.088 0.912 34 H 0.103 0.897 35 H 0.120 0.880 36 H 0.131 0.869 37 H 0.110 0.890 38 H 0.122 0.878 39 H 0.200 0.800 40 H 0.069 0.931 41 H 0.050 0.950 42 H 0.114 0.886 43 H 0.102 0.898 44 H 0.143 0.857 45 H 0.074 0.926 46 H 0.099 0.901 47 H 0.106 0.894 48 H 0.107 0.893 49 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -23.583 1.195 1.847 23.686 hybrid contribution 1.612 0.663 1.095 2.058 sum -21.971 1.857 2.942 22.245 Atomic orbital electron populations 1.24034 0.94436 1.03422 0.95671 1.21795 0.96149 0.94542 1.04500 1.20919 1.00766 0.94266 1.01716 1.21114 1.02168 0.96761 0.77934 1.46263 1.17054 1.37002 1.14172 1.25094 0.90709 1.00956 0.88770 1.20954 0.90018 0.95680 1.02089 1.19066 0.88889 0.89343 0.84049 0.97247 1.86619 1.84941 1.38507 1.27777 1.21964 0.99264 0.94359 1.46194 0.91055 1.25919 1.01353 0.95925 0.94462 1.70238 1.27820 1.11711 1.44062 0.85531 0.78063 0.78822 0.79000 1.19383 1.21584 1.18650 1.73891 1.13001 1.12395 1.18537 1.74397 1.02748 1.21369 1.21599 1.22652 0.92608 0.97761 0.88348 1.59121 1.11786 1.27966 1.17321 1.23130 1.00987 0.90279 0.96827 1.22783 0.88921 1.01781 0.86692 1.88009 1.78217 1.35043 1.30040 1.22302 0.92814 0.88923 0.92100 0.89653 1.21761 1.01002 1.02525 0.94642 1.22820 0.95643 1.00767 0.89226 0.86453 0.87195 0.93014 0.91177 0.89657 0.88029 0.86853 0.88952 0.87833 0.80043 0.93111 0.94992 0.88562 0.89786 0.85719 0.92637 0.90076 0.89356 0.89264 0.94149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.24 13.88 67.78 0.94 -1.30 16 2 C -0.17 -3.41 5.64 -16.49 -0.09 -3.50 16 3 C -0.12 -2.34 8.96 71.24 0.64 -1.70 16 4 C 0.14 3.41 5.91 85.63 0.51 3.91 16 5 N -0.45 -14.87 2.79 -518.89 -1.45 -16.32 16 6 C 0.21 8.64 7.11 137.64 0.98 9.61 16 7 C -0.05 -1.89 5.11 29.85 0.15 -1.73 16 8 C 0.25 12.29 2.81 29.85 0.08 12.37 16 9 H 0.01 0.58 8.14 -2.38 -0.02 0.56 16 10 O -0.57 -27.96 12.22 -148.98 -1.82 -29.78 16 11 C -0.58 -30.47 8.78 25.60 0.22 -30.25 16 12 H 0.07 3.50 7.74 -2.91 -0.02 3.48 16 13 C 0.03 1.41 5.40 84.65 0.46 1.87 16 14 N -0.90 -53.67 12.84 21.45 0.28 -53.39 16 15 Si 0.96 42.24 29.54 68.60 2.03 44.27 16 16 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 17 H -0.29 -12.86 7.11 99.48 0.71 -12.15 16 18 H -0.26 -11.01 7.11 99.48 0.71 -10.30 16 19 N -0.34 -15.66 12.18 -49.54 -0.60 -16.27 16 20 N -0.36 -15.09 11.39 -58.00 -0.66 -15.75 16 21 C 0.34 11.74 6.94 260.11 1.81 13.55 16 22 N -0.44 -11.14 4.74 -705.06 -3.34 -14.48 16 23 C 0.02 0.34 5.47 86.32 0.47 0.81 16 24 C 0.08 1.18 7.01 72.02 0.50 1.68 16 25 O -0.39 -7.76 10.47 -148.98 -1.56 -9.32 16 26 C 0.10 1.69 3.43 30.63 0.10 1.79 16 27 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 28 C -0.14 -1.99 9.57 71.98 0.69 -1.30 16 29 C 0.04 1.03 4.39 86.31 0.38 1.41 16 30 H 0.12 1.55 8.02 -2.91 -0.02 1.53 16 31 H 0.11 1.61 7.98 -2.91 -0.02 1.59 16 32 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 33 H 0.07 1.38 7.51 -2.39 -0.02 1.36 16 34 H 0.08 1.29 8.01 -2.39 -0.02 1.27 16 35 H 0.10 2.53 6.30 -2.39 -0.02 2.52 16 36 H 0.11 2.27 6.08 -2.38 -0.01 2.25 16 37 H 0.09 3.70 8.14 -2.39 -0.02 3.68 16 38 H 0.10 3.43 5.85 -2.39 -0.01 3.42 16 39 H 0.35 14.18 7.83 -74.06 -0.58 13.60 16 40 H 0.26 14.72 8.31 -92.71 -0.77 13.95 16 41 H 0.03 0.89 8.14 -2.39 -0.02 0.87 16 42 H 0.10 1.99 6.33 -2.39 -0.02 1.97 16 43 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 44 H 0.12 1.48 8.14 -2.39 -0.02 1.46 16 45 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 46 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 47 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 48 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 49 H 0.04 1.18 8.02 -2.39 -0.02 1.16 16 Total: -1.00 -74.94 395.43 1.08 -73.86 By element: Atomic # 1 Polarization: 29.57 SS G_CDS: 0.37 Total: 29.94 kcal Atomic # 6 Polarization: -0.60 SS G_CDS: 7.84 Total: 7.25 kcal Atomic # 7 Polarization: -110.43 SS G_CDS: -5.78 Total: -116.21 kcal Atomic # 8 Polarization: -35.73 SS G_CDS: -3.38 Total: -39.11 kcal Atomic # 14 Polarization: 42.24 SS G_CDS: 2.03 Total: 44.27 kcal Total: -74.94 1.08 -73.86 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001342011055.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.672 kcal (2) G-P(sol) polarization free energy of solvation -74.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.860 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds