Wall clock time and date at job start Tue Mar 31 2020 19:11:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34233 * 117.00015 * 2 1 4 4 O 1.20828 * 119.99611 * 359.97438 * 3 2 1 5 5 C 1.50699 * 120.00265 * 180.02562 * 3 2 1 6 6 H 1.08994 * 109.52296 * 59.86798 * 5 3 2 7 7 C 1.53120 * 109.57126 * 299.70889 * 5 3 2 8 8 C 1.53041 * 109.27581 * 182.40696 * 7 5 3 9 9 N 1.46852 * 109.52069 * 59.18185 * 8 7 5 10 10 C 1.38582 * 110.99703 * 174.16052 * 9 8 7 11 11 N 1.31214 * 126.47945 * 62.28260 * 10 9 8 12 12 N 1.28522 * 109.86312 * 179.73210 * 11 10 9 13 13 C 1.30293 * 110.05069 * 0.44765 * 12 11 10 14 14 C 1.50709 * 126.34368 * 179.82217 * 13 12 11 15 15 C 1.52988 * 109.47296 * 269.69299 * 14 13 12 16 16 C 1.50701 * 109.47335 * 179.97438 * 15 14 13 17 17 H 1.08001 * 119.99851 * 0.02562 * 16 15 14 18 18 C 1.37880 * 120.00449 * 179.97438 * 16 15 14 19 19 N 1.31502 * 120.00323 * 180.02562 * 18 16 15 20 20 Si 1.86807 * 119.99578 * 0.02562 * 18 16 15 21 21 H 1.48499 * 109.47135 * 269.99436 * 20 18 16 22 22 H 1.48499 * 109.47076 * 30.00097 * 20 18 16 23 23 H 1.48499 * 109.46762 * 149.99780 * 20 18 16 24 24 N 1.36458 * 126.46800 * 242.28599 * 10 9 8 25 25 C 1.46503 * 127.14020 * 359.97438 * 24 10 9 26 26 C 1.46837 * 111.19802 * 298.25530 * 9 8 7 27 27 C 1.53037 * 109.52487 * 61.74473 * 26 9 8 28 28 H 1.09010 * 109.50562 * 180.84146 * 27 26 9 29 29 C 1.53003 * 109.50535 * 60.75964 * 27 26 9 30 30 H 1.09003 * 109.47149 * 60.00611 * 1 2 3 31 31 H 1.09005 * 109.47051 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47412 * 300.00279 * 1 2 3 33 33 H 1.08992 * 109.50348 * 302.35162 * 7 5 3 34 34 H 1.09006 * 109.50188 * 62.43461 * 7 5 3 35 35 H 1.08995 * 109.46742 * 299.16505 * 8 7 5 36 36 H 1.08999 * 109.45970 * 179.19457 * 8 7 5 37 37 H 1.09006 * 109.46797 * 149.68874 * 14 13 12 38 38 H 1.09000 * 109.46872 * 29.69768 * 14 13 12 39 39 H 1.09006 * 109.47544 * 60.00033 * 15 14 13 40 40 H 1.09000 * 109.47542 * 300.00058 * 15 14 13 41 41 H 0.97003 * 120.00656 * 180.02562 * 19 18 16 42 42 H 1.09006 * 109.46860 * 265.43396 * 25 24 10 43 43 H 1.08999 * 109.46632 * 25.42833 * 25 24 10 44 44 H 1.08994 * 109.47180 * 145.43381 * 25 24 10 45 45 H 1.09000 * 109.46553 * 181.75548 * 26 9 8 46 46 H 1.08999 * 109.46544 * 301.73930 * 26 9 8 47 47 H 1.09000 * 109.46805 * 59.99879 * 29 27 26 48 48 H 1.09001 * 109.47314 * 180.02562 * 29 27 26 49 49 H 1.09001 * 109.46994 * 300.00258 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4032 2.2093 -0.0005 5 6 3.5663 1.2750 -0.0006 6 1 3.9567 0.7792 -0.8893 7 6 4.1164 0.5875 1.2522 8 6 5.6406 0.7240 1.2752 9 7 6.0060 2.1463 1.2750 10 6 7.3740 2.3075 1.4271 11 7 8.3056 1.8837 0.6060 12 7 9.4647 2.2112 1.0543 13 6 9.3430 2.8497 2.1834 14 6 10.4666 3.3962 3.0261 15 6 10.9138 2.3333 4.0313 16 6 12.0378 2.8795 4.8735 17 1 12.3970 3.8846 4.7085 18 6 12.6071 2.0967 5.8554 19 7 13.5875 2.5735 6.5906 20 14 11.9854 0.3584 6.1413 21 1 10.8900 0.3830 7.1437 22 1 11.4752 -0.2012 4.8639 23 1 13.0970 -0.4884 6.6437 24 7 8.0066 2.9371 2.4594 25 6 7.3833 3.5749 3.6217 26 6 5.5291 2.8169 0.0589 27 6 4.0017 2.7430 -0.0005 28 1 3.6490 3.2278 -0.9109 29 6 3.4082 3.4518 1.2186 30 1 -0.3633 0.5137 -0.8901 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5139 0.8900 33 1 3.6954 1.0586 2.1403 34 1 3.8452 -0.4681 1.2368 35 1 6.0619 0.2407 0.3937 36 1 6.0343 0.2479 2.1732 37 1 10.1219 4.2808 3.5617 38 1 11.3052 3.6645 2.3836 39 1 11.2585 1.4487 3.4957 40 1 10.0752 2.0650 4.6739 41 1 13.9883 2.0227 7.2812 42 1 7.2555 4.6397 3.4268 43 1 6.4103 3.1201 3.8073 44 1 8.0204 3.4394 4.4956 45 1 5.8418 3.8610 0.0734 46 1 5.9507 2.3237 -0.8170 47 1 3.7214 4.4958 1.2200 48 1 2.3203 3.3984 1.1760 49 1 3.7601 2.9657 2.1285 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001351095100.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:11:01 Heat of formation + Delta-G solvation = -3.828349 kcal Electronic energy + Delta-G solvation = -29812.329501 eV Core-core repulsion = 25776.116941 eV Total energy + Delta-G solvation = -4036.212560 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.75110 -41.30039 -39.32850 -36.96779 -34.95507 -34.79945 -33.68472 -32.21022 -31.79611 -29.17503 -28.42683 -27.39879 -27.14733 -25.78119 -25.16548 -23.24679 -21.97245 -21.56322 -20.91158 -20.07710 -19.06079 -17.99582 -17.65947 -16.97910 -16.88848 -16.69594 -16.19859 -16.00211 -15.01633 -14.73548 -14.72197 -14.33426 -14.25554 -14.08023 -13.75708 -13.43168 -13.37216 -13.17076 -12.98476 -12.73306 -12.60297 -12.52149 -12.17194 -11.98502 -11.85213 -11.62430 -11.47730 -11.34000 -11.20058 -11.11305 -11.02712 -10.84087 -10.55400 -10.34104 -10.29853 -10.12251 -9.87540 -9.84020 -9.32221 -8.89457 -8.62459 -8.59663 -6.12021 -4.11695 1.78510 1.93746 2.28268 2.38324 3.10776 3.25200 3.34664 3.40058 3.60195 4.03381 4.22777 4.34032 4.39034 4.66310 4.68411 4.71367 4.75259 4.78005 4.87912 4.90686 4.96223 5.08456 5.18631 5.21012 5.21580 5.23587 5.31432 5.34016 5.42900 5.45365 5.53727 5.56333 5.61572 5.75345 5.82129 5.88740 6.03957 6.16425 6.19978 6.26480 6.29311 6.46935 6.51335 6.78828 7.08564 7.24672 7.33410 7.35909 7.66637 8.41891 8.91117 9.01211 9.49496 11.00777 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.021871 B = 0.002386 C = 0.002294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1279.904630 B =11733.126990 C =12200.685558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.358 6.358 3 C 0.468 3.532 4 O -0.499 6.499 5 C -0.079 4.079 6 H 0.111 0.889 7 C -0.107 4.107 8 C 0.068 3.932 9 N -0.458 5.458 10 C 0.319 3.681 11 N -0.311 5.311 12 N -0.296 5.296 13 C 0.212 3.788 14 C -0.023 4.023 15 C -0.004 4.004 16 C -0.523 4.523 17 H 0.076 0.924 18 C 0.071 3.929 19 N -0.898 5.898 20 Si 0.876 3.124 21 H -0.278 1.278 22 H -0.265 1.265 23 H -0.286 1.286 24 N -0.466 5.466 25 C 0.079 3.921 26 C 0.074 3.926 27 C -0.069 4.069 28 H 0.087 0.913 29 C -0.157 4.157 30 H 0.062 0.938 31 H 0.101 0.899 32 H 0.063 0.937 33 H 0.082 0.918 34 H 0.088 0.912 35 H 0.058 0.942 36 H 0.084 0.916 37 H 0.076 0.924 38 H 0.096 0.904 39 H 0.025 0.975 40 H 0.009 0.991 41 H 0.264 0.736 42 H 0.077 0.923 43 H 0.092 0.908 44 H 0.095 0.905 45 H 0.083 0.917 46 H 0.056 0.944 47 H 0.053 0.947 48 H 0.077 0.923 49 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.464 -2.431 -11.741 29.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.275 6.275 3 C 0.311 3.689 4 O -0.386 6.386 5 C -0.098 4.098 6 H 0.129 0.871 7 C -0.145 4.145 8 C -0.059 4.059 9 N -0.184 5.184 10 C -0.037 4.037 11 N -0.156 5.156 12 N -0.136 5.136 13 C -0.055 4.055 14 C -0.063 4.063 15 C -0.042 4.042 16 C -0.561 4.561 17 H 0.094 0.906 18 C -0.131 4.131 19 N -0.537 5.537 20 Si 0.703 3.297 21 H -0.203 1.203 22 H -0.189 1.189 23 H -0.212 1.212 24 N -0.158 5.158 25 C -0.064 4.064 26 C -0.054 4.054 27 C -0.088 4.088 28 H 0.105 0.895 29 C -0.214 4.214 30 H 0.081 0.919 31 H 0.119 0.881 32 H 0.082 0.918 33 H 0.101 0.899 34 H 0.106 0.894 35 H 0.077 0.923 36 H 0.102 0.898 37 H 0.095 0.905 38 H 0.114 0.886 39 H 0.044 0.956 40 H 0.027 0.973 41 H 0.074 0.926 42 H 0.096 0.904 43 H 0.110 0.890 44 H 0.113 0.887 45 H 0.101 0.899 46 H 0.074 0.926 47 H 0.072 0.928 48 H 0.095 0.905 49 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -27.184 -2.600 -12.375 29.981 hybrid contribution -0.774 -0.615 0.802 1.273 sum -27.958 -3.215 -11.573 30.429 Atomic orbital electron populations 1.23277 0.76302 1.03765 1.02563 1.86522 1.23442 1.33546 1.83981 1.23743 0.91885 0.81253 0.72042 1.90606 1.67193 1.35999 1.44820 1.21236 0.87034 0.99421 1.02145 0.87148 1.21658 0.94776 1.01358 0.96710 1.22124 0.94842 0.85917 1.03059 1.58481 1.05198 1.14940 1.39755 1.22076 0.91065 1.01280 0.89304 1.74488 0.95484 1.21129 1.24458 1.74064 1.15711 1.15063 1.08767 1.25666 0.83743 1.00179 0.95948 1.20252 0.91082 0.99262 0.95708 1.19543 0.96609 0.94568 0.93491 1.21003 1.16552 1.02123 1.16443 0.90581 1.24967 0.94556 0.98095 0.95478 1.69890 1.24739 1.37257 1.21793 0.86831 0.78676 0.85232 0.78937 1.20342 1.18937 1.21155 1.46237 1.07184 1.42890 1.19512 1.22046 0.99798 0.98197 0.86399 1.22162 0.93899 0.99670 0.89621 1.21080 0.93848 0.92670 1.01223 0.89477 1.22082 1.02295 0.99907 0.97083 0.91897 0.88067 0.91843 0.89945 0.89394 0.92350 0.89787 0.90508 0.88605 0.95638 0.97319 0.92570 0.90409 0.88961 0.88672 0.89897 0.92582 0.92805 0.90451 0.91755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 10.56 101.05 1.07 1.25 16 2 O -0.36 -2.81 10.50 -39.27 -0.41 -3.22 16 3 C 0.47 4.05 6.96 36.00 0.25 4.30 16 4 O -0.50 -5.38 13.27 -18.75 -0.25 -5.63 16 5 C -0.08 -0.59 2.48 -91.65 -0.23 -0.82 16 6 H 0.11 0.71 8.14 -51.93 -0.42 0.29 16 7 C -0.11 -0.79 4.96 -26.65 -0.13 -0.92 16 8 C 0.07 0.67 5.38 -3.83 -0.02 0.65 16 9 N -0.46 -5.17 3.94 -174.55 -0.69 -5.85 16 10 C 0.32 4.84 6.41 -318.87 -2.04 2.79 16 11 N -0.31 -5.70 12.19 30.32 0.37 -5.33 16 12 N -0.30 -6.01 12.18 32.99 0.40 -5.61 16 13 C 0.21 3.92 7.32 -154.02 -1.13 2.79 16 14 C -0.02 -0.44 5.45 -27.88 -0.15 -0.60 16 15 C 0.00 -0.08 4.02 -27.89 -0.11 -0.19 16 16 C -0.52 -14.25 9.66 -34.44 -0.33 -14.58 16 17 H 0.08 2.19 7.99 -52.49 -0.42 1.77 16 18 C 0.07 2.01 5.47 -17.82 -0.10 1.92 16 19 N -0.90 -26.96 13.96 55.43 0.77 -26.18 16 20 Si 0.88 21.40 27.47 -169.99 -4.67 16.73 16 21 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 22 H -0.26 -6.40 6.54 56.52 0.37 -6.03 16 23 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 24 N -0.47 -7.20 3.21 -121.45 -0.39 -7.59 16 25 C 0.08 0.90 10.88 59.85 0.65 1.55 16 26 C 0.07 0.73 4.82 -3.84 -0.02 0.71 16 27 C -0.07 -0.57 2.42 -90.54 -0.22 -0.79 16 28 H 0.09 0.70 8.14 -51.92 -0.42 0.27 16 29 C -0.16 -1.38 8.40 37.16 0.31 -1.07 16 30 H 0.06 0.33 8.13 -51.93 -0.42 -0.09 16 31 H 0.10 0.30 8.14 -51.93 -0.42 -0.13 16 32 H 0.06 0.34 8.13 -51.93 -0.42 -0.08 16 33 H 0.08 0.63 6.58 -51.93 -0.34 0.29 16 34 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.08 0.89 8.10 -51.93 -0.42 0.47 16 37 H 0.08 1.32 7.97 -51.93 -0.41 0.90 16 38 H 0.10 1.85 8.14 -51.93 -0.42 1.43 16 39 H 0.03 0.63 7.20 -51.93 -0.37 0.25 16 40 H 0.01 0.19 7.57 -51.93 -0.39 -0.20 16 41 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 42 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 43 H 0.09 0.89 8.12 -51.93 -0.42 0.47 16 44 H 0.09 1.13 8.05 -51.93 -0.42 0.71 16 45 H 0.08 0.86 8.10 -51.93 -0.42 0.44 16 46 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 47 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 48 H 0.08 0.77 5.34 -51.93 -0.28 0.49 16 49 H 0.06 0.58 6.01 -51.93 -0.31 0.27 16 LS Contribution 391.54 15.07 5.90 5.90 Total: -1.00 -33.83 391.54 -9.19 -43.02 By element: Atomic # 1 Polarization: 4.79 SS G_CDS: -8.03 Total: -3.23 kcal Atomic # 6 Polarization: -0.80 SS G_CDS: -2.20 Total: -3.00 kcal Atomic # 7 Polarization: -51.03 SS G_CDS: 0.47 Total: -50.56 kcal Atomic # 8 Polarization: -8.19 SS G_CDS: -0.66 Total: -8.85 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -4.67 Total: 16.73 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -33.83 -9.19 -43.02 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001351095100.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.192 kcal (2) G-P(sol) polarization free energy of solvation -33.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.020 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds