Wall clock time and date at job start Tue Mar 31 2020 19:11:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34233 * 117.00015 * 2 1 4 4 O 1.20828 * 119.99611 * 359.97438 * 3 2 1 5 5 C 1.50699 * 120.00265 * 180.02562 * 3 2 1 6 6 H 1.08994 * 109.52296 * 59.86798 * 5 3 2 7 7 C 1.53120 * 109.57126 * 299.70889 * 5 3 2 8 8 C 1.53041 * 109.27581 * 182.40696 * 7 5 3 9 9 N 1.46852 * 109.52069 * 59.18185 * 8 7 5 10 10 C 1.38582 * 110.99703 * 174.16052 * 9 8 7 11 11 N 1.31214 * 126.47945 * 62.28260 * 10 9 8 12 12 N 1.28522 * 109.86312 * 179.73210 * 11 10 9 13 13 C 1.30293 * 110.05069 * 0.44765 * 12 11 10 14 14 C 1.50709 * 126.34368 * 179.82217 * 13 12 11 15 15 C 1.52988 * 109.47296 * 269.69299 * 14 13 12 16 16 C 1.50701 * 109.47335 * 179.97438 * 15 14 13 17 17 H 1.08001 * 119.99851 * 0.02562 * 16 15 14 18 18 C 1.37880 * 120.00449 * 179.97438 * 16 15 14 19 19 N 1.31502 * 120.00323 * 180.02562 * 18 16 15 20 20 Si 1.86807 * 119.99578 * 0.02562 * 18 16 15 21 21 H 1.48499 * 109.47135 * 269.99436 * 20 18 16 22 22 H 1.48499 * 109.47076 * 30.00097 * 20 18 16 23 23 H 1.48499 * 109.46762 * 149.99780 * 20 18 16 24 24 N 1.36458 * 126.46800 * 242.28599 * 10 9 8 25 25 C 1.46503 * 127.14020 * 359.97438 * 24 10 9 26 26 C 1.46837 * 111.19802 * 298.25530 * 9 8 7 27 27 C 1.53037 * 109.52487 * 61.74473 * 26 9 8 28 28 H 1.09010 * 109.50562 * 180.84146 * 27 26 9 29 29 C 1.53003 * 109.50535 * 60.75964 * 27 26 9 30 30 H 1.09003 * 109.47149 * 60.00611 * 1 2 3 31 31 H 1.09005 * 109.47051 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47412 * 300.00279 * 1 2 3 33 33 H 1.08992 * 109.50348 * 302.35162 * 7 5 3 34 34 H 1.09006 * 109.50188 * 62.43461 * 7 5 3 35 35 H 1.08995 * 109.46742 * 299.16505 * 8 7 5 36 36 H 1.08999 * 109.45970 * 179.19457 * 8 7 5 37 37 H 1.09006 * 109.46797 * 149.68874 * 14 13 12 38 38 H 1.09000 * 109.46872 * 29.69768 * 14 13 12 39 39 H 1.09006 * 109.47544 * 60.00033 * 15 14 13 40 40 H 1.09000 * 109.47542 * 300.00058 * 15 14 13 41 41 H 0.97003 * 120.00656 * 180.02562 * 19 18 16 42 42 H 1.09006 * 109.46860 * 265.43396 * 25 24 10 43 43 H 1.08999 * 109.46632 * 25.42833 * 25 24 10 44 44 H 1.08994 * 109.47180 * 145.43381 * 25 24 10 45 45 H 1.09000 * 109.46553 * 181.75548 * 26 9 8 46 46 H 1.08999 * 109.46544 * 301.73930 * 26 9 8 47 47 H 1.09000 * 109.46805 * 59.99879 * 29 27 26 48 48 H 1.09001 * 109.47314 * 180.02562 * 29 27 26 49 49 H 1.09001 * 109.46994 * 300.00258 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4032 2.2093 -0.0005 5 6 3.5663 1.2750 -0.0006 6 1 3.9567 0.7792 -0.8893 7 6 4.1164 0.5875 1.2522 8 6 5.6406 0.7240 1.2752 9 7 6.0060 2.1463 1.2750 10 6 7.3740 2.3075 1.4271 11 7 8.3056 1.8837 0.6060 12 7 9.4647 2.2112 1.0543 13 6 9.3430 2.8497 2.1834 14 6 10.4666 3.3962 3.0261 15 6 10.9138 2.3333 4.0313 16 6 12.0378 2.8795 4.8735 17 1 12.3970 3.8846 4.7085 18 6 12.6071 2.0967 5.8554 19 7 13.5875 2.5735 6.5906 20 14 11.9854 0.3584 6.1413 21 1 10.8900 0.3830 7.1437 22 1 11.4752 -0.2012 4.8639 23 1 13.0970 -0.4884 6.6437 24 7 8.0066 2.9371 2.4594 25 6 7.3833 3.5749 3.6217 26 6 5.5291 2.8169 0.0589 27 6 4.0017 2.7430 -0.0005 28 1 3.6490 3.2278 -0.9109 29 6 3.4082 3.4518 1.2186 30 1 -0.3633 0.5137 -0.8901 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5139 0.8900 33 1 3.6954 1.0586 2.1403 34 1 3.8452 -0.4681 1.2368 35 1 6.0619 0.2407 0.3937 36 1 6.0343 0.2479 2.1732 37 1 10.1219 4.2808 3.5617 38 1 11.3052 3.6645 2.3836 39 1 11.2585 1.4487 3.4957 40 1 10.0752 2.0650 4.6739 41 1 13.9883 2.0227 7.2812 42 1 7.2555 4.6397 3.4268 43 1 6.4103 3.1201 3.8073 44 1 8.0204 3.4394 4.4956 45 1 5.8418 3.8610 0.0734 46 1 5.9507 2.3237 -0.8170 47 1 3.7214 4.4958 1.2200 48 1 2.3203 3.3984 1.1760 49 1 3.7601 2.9657 2.1285 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001351095100.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:11:00 Heat of formation + Delta-G solvation = -22.253382 kcal Electronic energy + Delta-G solvation = -29813.128471 eV Core-core repulsion = 25776.116941 eV Total energy + Delta-G solvation = -4037.011530 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -44.03599 -41.97435 -40.10319 -37.62991 -36.41967 -35.86960 -35.14709 -33.65729 -32.89821 -30.51597 -29.20183 -28.42808 -27.77439 -27.32255 -26.19983 -23.97831 -23.39234 -22.70170 -21.89016 -21.54636 -19.79535 -19.06645 -18.65575 -18.45926 -17.63970 -17.54344 -17.34640 -17.00077 -16.34544 -15.81197 -15.66196 -15.47978 -15.12446 -15.08175 -14.87432 -14.73727 -14.62774 -14.27261 -14.08012 -13.71902 -13.66698 -13.34770 -13.09332 -12.97228 -12.83845 -12.76939 -12.62827 -12.57750 -12.26382 -12.13624 -12.02653 -11.88279 -11.77456 -11.66964 -11.54482 -11.46791 -11.40129 -11.05885 -11.03654 -10.77476 -9.99985 -9.88390 -8.29745 -6.33765 0.68689 1.14311 1.24714 1.32401 1.37557 1.47975 1.73038 1.73520 2.34384 2.62376 3.05474 3.37212 3.43409 3.56072 3.71457 3.80885 3.95929 4.00795 4.10115 4.14973 4.22001 4.32061 4.35189 4.37187 4.39751 4.49483 4.52984 4.59165 4.62661 4.65193 4.69334 4.72766 4.74448 4.78132 4.80967 4.89779 5.04890 5.08169 5.13112 5.22491 5.28325 5.38912 5.41979 5.50513 5.60226 5.63720 5.68625 6.19865 6.24639 6.73393 6.73495 7.30812 7.67379 8.86135 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.021871 B = 0.002386 C = 0.002294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1279.904630 B =11733.126990 C =12200.685558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.362 6.362 3 C 0.472 3.528 4 O -0.523 6.523 5 C -0.077 4.077 6 H 0.125 0.875 7 C -0.095 4.095 8 C 0.068 3.932 9 N -0.450 5.450 10 C 0.339 3.661 11 N -0.342 5.342 12 N -0.330 5.330 13 C 0.199 3.801 14 C -0.011 4.011 15 C 0.005 3.995 16 C -0.526 4.526 17 H 0.047 0.953 18 C 0.013 3.987 19 N -0.943 5.943 20 Si 0.941 3.059 21 H -0.261 1.261 22 H -0.261 1.261 23 H -0.284 1.284 24 N -0.463 5.463 25 C 0.071 3.929 26 C 0.077 3.923 27 C -0.061 4.061 28 H 0.092 0.908 29 C -0.151 4.151 30 H 0.061 0.939 31 H 0.127 0.873 32 H 0.061 0.939 33 H 0.084 0.916 34 H 0.105 0.895 35 H 0.053 0.947 36 H 0.078 0.922 37 H 0.096 0.904 38 H 0.087 0.913 39 H 0.009 0.991 40 H 0.020 0.980 41 H 0.267 0.733 42 H 0.099 0.901 43 H 0.113 0.887 44 H 0.092 0.908 45 H 0.078 0.922 46 H 0.051 0.949 47 H 0.053 0.947 48 H 0.067 0.933 49 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.314 -3.580 -11.816 32.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.279 6.279 3 C 0.316 3.684 4 O -0.412 6.412 5 C -0.096 4.096 6 H 0.143 0.857 7 C -0.133 4.133 8 C -0.059 4.059 9 N -0.177 5.177 10 C -0.018 4.018 11 N -0.186 5.186 12 N -0.171 5.171 13 C -0.069 4.069 14 C -0.051 4.051 15 C -0.033 4.033 16 C -0.564 4.564 17 H 0.065 0.935 18 C -0.185 4.185 19 N -0.584 5.584 20 Si 0.765 3.235 21 H -0.185 1.185 22 H -0.186 1.186 23 H -0.210 1.210 24 N -0.155 5.155 25 C -0.070 4.070 26 C -0.050 4.050 27 C -0.080 4.080 28 H 0.110 0.890 29 C -0.208 4.208 30 H 0.080 0.920 31 H 0.146 0.854 32 H 0.080 0.920 33 H 0.102 0.898 34 H 0.123 0.877 35 H 0.071 0.929 36 H 0.097 0.903 37 H 0.114 0.886 38 H 0.105 0.895 39 H 0.028 0.972 40 H 0.039 0.961 41 H 0.076 0.924 42 H 0.117 0.883 43 H 0.131 0.869 44 H 0.110 0.890 45 H 0.096 0.904 46 H 0.070 0.930 47 H 0.072 0.928 48 H 0.086 0.914 49 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -30.062 -3.749 -12.450 32.753 hybrid contribution 0.025 -0.205 0.780 0.807 sum -30.037 -3.953 -11.670 32.466 Atomic orbital electron populations 1.23521 0.74970 1.05536 1.02480 1.86511 1.24787 1.32957 1.83599 1.23831 0.92108 0.81156 0.71327 1.90606 1.67769 1.36798 1.46069 1.21238 0.86593 0.98924 1.02894 0.85729 1.21584 0.92592 1.02483 0.96638 1.22184 0.96526 0.84665 1.02546 1.58766 1.02477 1.16060 1.40377 1.22462 0.92146 0.98957 0.88220 1.74419 0.95545 1.22817 1.25829 1.73965 1.17214 1.15998 1.09881 1.25270 0.84798 1.00981 0.95879 1.19965 0.91473 0.98695 0.94945 1.19370 0.95408 0.94853 0.93706 1.21300 1.17410 1.01041 1.16666 0.93461 1.25832 0.94815 1.02404 0.95432 1.70025 1.26419 1.39062 1.22870 0.85801 0.78526 0.80001 0.79178 1.18534 1.18551 1.20978 1.46408 1.06243 1.42482 1.20336 1.22366 1.00328 0.99461 0.84827 1.22168 0.94948 0.99135 0.88734 1.21000 0.92301 0.93416 1.01313 0.88978 1.22006 1.01606 0.99970 0.97177 0.91986 0.85439 0.91977 0.89792 0.87651 0.92907 0.90339 0.88561 0.89456 0.97243 0.96131 0.92390 0.88292 0.86865 0.88968 0.90381 0.93031 0.92823 0.91389 0.91777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 10.56 113.37 1.20 1.44 16 2 O -0.36 -4.81 10.50 -51.45 -0.54 -5.35 16 3 C 0.47 7.17 6.96 71.24 0.50 7.67 16 4 O -0.52 -10.45 13.27 21.96 0.29 -10.16 16 5 C -0.08 -0.97 2.48 -11.46 -0.03 -1.00 16 6 H 0.12 1.26 8.14 -2.39 -0.02 1.24 16 7 C -0.10 -1.14 4.96 30.65 0.15 -0.99 16 8 C 0.07 1.18 5.38 86.33 0.46 1.65 16 9 N -0.45 -9.25 3.94 -706.16 -2.78 -12.03 16 10 C 0.34 9.79 6.41 260.11 1.67 11.46 16 11 N -0.34 -12.33 12.19 -58.00 -0.71 -13.04 16 12 N -0.33 -13.39 12.18 -49.53 -0.60 -13.99 16 13 C 0.20 7.23 7.32 137.64 1.01 8.24 16 14 C -0.01 -0.42 5.45 29.85 0.16 -0.25 16 15 C 0.01 0.24 4.02 29.84 0.12 0.36 16 16 C -0.53 -28.98 9.66 25.60 0.25 -28.73 16 17 H 0.05 2.80 7.99 -2.91 -0.02 2.78 16 18 C 0.01 0.74 5.47 84.66 0.46 1.20 16 19 N -0.94 -57.52 13.96 21.45 0.30 -57.22 16 20 Si 0.94 43.84 27.47 68.60 1.88 45.73 16 21 H -0.26 -11.38 7.11 99.48 0.71 -10.67 16 22 H -0.26 -11.93 6.54 99.48 0.65 -11.28 16 23 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 24 N -0.46 -13.51 3.21 -538.17 -1.73 -15.24 16 25 C 0.07 1.45 10.88 127.77 1.39 2.84 16 26 C 0.08 1.39 4.82 86.33 0.42 1.80 16 27 C -0.06 -0.89 2.42 -10.74 -0.03 -0.91 16 28 H 0.09 1.29 8.14 -2.38 -0.02 1.27 16 29 C -0.15 -2.35 8.40 71.98 0.60 -1.74 16 30 H 0.06 0.55 8.13 -2.39 -0.02 0.53 16 31 H 0.13 0.39 8.14 -2.38 -0.02 0.37 16 32 H 0.06 0.56 8.13 -2.39 -0.02 0.54 16 33 H 0.08 1.03 6.58 -2.39 -0.02 1.02 16 34 H 0.11 0.97 8.14 -2.38 -0.02 0.95 16 35 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 36 H 0.08 1.49 8.10 -2.39 -0.02 1.47 16 37 H 0.10 3.21 7.97 -2.38 -0.02 3.19 16 38 H 0.09 3.42 8.14 -2.39 -0.02 3.40 16 39 H 0.01 0.45 7.20 -2.38 -0.02 0.44 16 40 H 0.02 0.89 7.57 -2.39 -0.02 0.87 16 41 H 0.27 15.23 8.31 -92.71 -0.77 14.46 16 42 H 0.10 1.61 8.14 -2.38 -0.02 1.59 16 43 H 0.11 1.82 8.12 -2.39 -0.02 1.80 16 44 H 0.09 1.96 8.05 -2.39 -0.02 1.95 16 45 H 0.08 1.50 8.10 -2.39 -0.02 1.48 16 46 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 47 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 48 H 0.07 1.24 5.34 -2.39 -0.01 1.23 16 49 H 0.06 0.99 6.01 -2.39 -0.01 0.98 16 Total: -1.00 -73.58 391.54 5.34 -68.24 By element: Atomic # 1 Polarization: 9.15 SS G_CDS: 0.88 Total: 10.03 kcal Atomic # 6 Polarization: -5.31 SS G_CDS: 8.33 Total: 3.02 kcal Atomic # 7 Polarization: -105.99 SS G_CDS: -5.52 Total: -111.51 kcal Atomic # 8 Polarization: -15.26 SS G_CDS: -0.25 Total: -15.51 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 1.88 Total: 45.73 kcal Total: -73.58 5.34 -68.24 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001351095100.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.987 kcal (2) G-P(sol) polarization free energy of solvation -73.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.240 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds