Wall clock time and date at job start Tue Mar 31 2020 20:02:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.47051 * 2 1 4 4 C 1.53007 * 109.47000 * 240.00680 * 2 1 3 5 5 C 1.50697 * 109.47392 * 64.99756 * 4 2 1 6 6 C 1.39870 * 126.03900 * 269.69515 * 5 4 2 7 7 N 1.30837 * 108.20097 * 179.81554 * 6 5 4 8 8 N 1.40086 * 108.20574 * 0.43885 * 7 6 5 9 9 C 1.46500 * 126.04028 * 179.70072 * 8 7 6 10 10 C 1.34951 * 107.92493 * 359.71605 * 8 7 6 11 11 C 1.50696 * 109.47545 * 120.00716 * 2 1 3 12 12 O 1.21280 * 120.00466 * 119.99984 * 11 2 1 13 13 N 1.34778 * 119.99928 * 300.00002 * 11 2 1 14 14 C 1.46498 * 120.00405 * 180.02562 * 13 11 2 15 15 C 1.53001 * 109.47139 * 180.02562 * 14 13 11 16 16 O 1.42898 * 110.88633 * 303.87721 * 15 14 13 17 17 C 1.55152 * 111.00408 * 179.97438 * 15 14 13 18 18 C 1.54318 * 102.94511 * 206.38522 * 17 15 14 19 19 N 1.47022 * 107.27253 * 22.18990 * 18 17 15 20 20 C 1.36933 * 125.65341 * 181.02674 * 19 18 17 21 21 H 1.08006 * 120.00444 * 153.90406 * 20 19 18 22 22 C 1.38817 * 119.99751 * 333.90252 * 20 19 18 23 23 N 1.31616 * 120.00100 * 145.63931 * 22 20 19 24 24 Si 1.86797 * 119.99742 * 325.63468 * 22 20 19 25 25 H 1.48495 * 109.47312 * 0.02562 * 24 22 20 26 26 H 1.48500 * 109.46991 * 120.00404 * 24 22 20 27 27 H 1.48502 * 109.47132 * 239.99993 * 24 22 20 28 28 C 1.47424 * 108.69946 * 1.29134 * 19 18 17 29 29 H 1.08997 * 109.47382 * 299.99301 * 1 2 3 30 30 H 1.08999 * 109.47642 * 59.99824 * 1 2 3 31 31 H 1.09001 * 109.47257 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.46960 * 185.00170 * 4 2 1 33 33 H 1.09007 * 109.46980 * 304.99644 * 4 2 1 34 34 H 1.08002 * 125.90084 * 359.97438 * 6 5 4 35 35 H 1.09002 * 109.46968 * 270.02309 * 9 8 7 36 36 H 1.09003 * 109.46803 * 30.01630 * 9 8 7 37 37 H 1.08990 * 109.47522 * 150.02352 * 9 8 7 38 38 H 1.07998 * 126.12477 * 179.97438 * 10 8 7 39 39 H 0.97005 * 119.99678 * 0.02562 * 13 11 2 40 40 H 1.08996 * 109.47372 * 59.99647 * 14 13 11 41 41 H 1.09001 * 109.46705 * 299.99729 * 14 13 11 42 42 H 0.96701 * 113.99994 * 56.12246 * 16 15 14 43 43 H 1.09001 * 110.72609 * 88.01809 * 17 15 14 44 44 H 1.09005 * 110.72274 * 324.74668 * 17 15 14 45 45 H 1.09006 * 109.88476 * 262.77823 * 18 17 15 46 46 H 1.08998 * 109.88900 * 141.61115 * 18 17 15 47 47 H 0.97006 * 120.00091 * 5.05677 * 23 22 20 48 48 H 1.09000 * 110.36988 * 94.48149 * 28 19 18 49 49 H 1.09005 * 110.36594 * 216.80532 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7211 -1.2494 5 6 1.6412 0.0572 -2.4766 6 6 0.4598 -0.1067 -3.2072 7 7 0.4700 0.7480 -4.1978 8 7 1.6646 1.4770 -4.1347 9 6 2.0798 2.5331 -5.0611 10 6 2.3655 1.0342 -3.0699 11 6 2.0324 -0.7105 1.2303 12 8 2.7297 -1.6966 1.1190 13 7 1.7068 -0.2502 2.4545 14 6 2.1957 -0.9405 3.6506 15 6 1.6850 -0.2198 4.8999 16 8 2.0683 1.1567 4.8864 17 6 2.1824 -0.9234 6.1902 18 6 1.1002 -0.5519 7.2256 19 7 -0.1176 -0.2043 6.4788 20 6 -1.3033 0.2021 7.0301 21 1 -1.9809 0.8195 6.4590 22 6 -1.6344 -0.1795 8.3230 23 7 -2.3151 0.6391 9.0969 24 14 -1.1141 -1.8549 8.9645 25 1 -0.3649 -2.5792 7.9066 26 1 -0.2442 -1.6807 10.1554 27 1 -2.3190 -2.6366 9.3419 28 6 0.1474 -0.3720 5.0383 29 1 -0.3634 0.5137 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3634 -1.0277 -0.0005 32 1 3.1263 -0.7994 -1.2057 33 1 1.6053 -1.7198 -1.2954 34 1 -0.3263 -0.8145 -2.9896 35 1 2.6420 2.0934 -5.8850 36 1 1.1980 3.0402 -5.4528 37 1 2.7084 3.2515 -4.5350 38 1 3.3317 1.3947 -2.7491 39 1 1.1488 0.5382 2.5436 40 1 3.2856 -0.9401 3.6504 41 1 1.8327 -1.9683 3.6507 42 1 1.7791 1.6378 4.0989 43 1 3.1547 -0.5336 6.4918 44 1 2.2259 -2.0033 6.0484 45 1 1.4298 0.3033 7.8158 46 1 0.9045 -1.4023 7.8788 47 1 -2.6486 1.4778 8.7413 48 1 -0.1696 -1.3608 4.7068 49 1 -0.3630 0.4027 4.4660 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001484241811.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:02:17 Heat of formation + Delta-G solvation = 16.189155 kcal Electronic energy + Delta-G solvation = -29133.829872 eV Core-core repulsion = 25098.485336 eV Total energy + Delta-G solvation = -4035.344536 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.57708 -40.13524 -38.69490 -35.50934 -35.26480 -34.20078 -33.25286 -32.37403 -30.82806 -29.89984 -28.54977 -27.79015 -26.22282 -25.82999 -23.75744 -22.61338 -21.39647 -20.84346 -20.40824 -20.13869 -19.76008 -17.73593 -17.49664 -17.13172 -16.32105 -15.95762 -15.67854 -15.63072 -15.02981 -14.81125 -14.68279 -14.26722 -14.13382 -13.78146 -13.52834 -13.47915 -13.25100 -13.12416 -12.99617 -12.92110 -12.75872 -12.35804 -12.34313 -12.12721 -11.80606 -11.47466 -11.32231 -11.30457 -11.15436 -10.83435 -10.78810 -10.61200 -10.47060 -9.83704 -9.76902 -9.71484 -9.56189 -9.27995 -9.14270 -8.66826 -8.25094 -7.06540 -6.31752 -3.25920 1.54885 2.17969 2.44852 2.57472 3.09664 3.46469 3.52948 3.67439 4.14249 4.31267 4.47450 4.49601 4.59504 4.64884 4.68902 4.71586 4.73487 4.84523 4.95487 4.96755 5.11849 5.14845 5.20102 5.25142 5.28573 5.45045 5.51963 5.58258 5.62026 5.68762 5.76253 5.87969 5.90161 5.95925 6.05040 6.09803 6.17035 6.28271 6.34142 6.39900 6.42740 6.65705 6.72513 6.88364 7.35806 7.36758 7.79588 7.89865 8.13187 8.36865 9.00402 9.60151 10.33515 11.05272 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.021894 B = 0.002133 C = 0.002068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1278.596761 B =13121.016098 C =13538.009667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.104 4.104 3 H 0.095 0.905 4 C -0.020 4.020 5 C -0.231 4.231 6 C 0.055 3.945 7 N -0.299 5.299 8 N -0.379 5.379 9 C 0.102 3.898 10 C 0.055 3.945 11 C 0.518 3.482 12 O -0.541 6.541 13 N -0.727 5.727 14 C 0.104 3.896 15 C 0.102 3.898 16 O -0.537 6.537 17 C -0.114 4.114 18 C 0.127 3.873 19 N -0.595 5.595 20 C -0.343 4.343 21 H 0.065 0.935 22 C -0.005 4.005 23 N -0.901 5.901 24 Si 1.049 2.951 25 H -0.279 1.279 26 H -0.292 1.292 27 H -0.297 1.297 28 C 0.110 3.890 29 H 0.059 0.941 30 H 0.069 0.931 31 H 0.062 0.938 32 H 0.076 0.924 33 H 0.078 0.922 34 H 0.182 0.818 35 H 0.073 0.927 36 H 0.088 0.912 37 H 0.087 0.913 38 H 0.173 0.827 39 H 0.398 0.602 40 H 0.074 0.926 41 H 0.079 0.921 42 H 0.364 0.636 43 H 0.079 0.921 44 H 0.080 0.920 45 H 0.039 0.961 46 H 0.031 0.969 47 H 0.266 0.734 48 H 0.029 0.971 49 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.419 1.901 -25.952 28.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.125 4.125 3 H 0.113 0.887 4 C -0.059 4.059 5 C -0.242 4.242 6 C -0.131 4.131 7 N -0.121 5.121 8 N -0.161 5.161 9 C -0.040 4.040 10 C -0.091 4.091 11 C 0.304 3.696 12 O -0.418 6.418 13 N -0.379 5.379 14 C -0.021 4.021 15 C 0.060 3.940 16 O -0.341 6.341 17 C -0.153 4.153 18 C 0.002 3.998 19 N -0.322 5.322 20 C -0.470 4.470 21 H 0.083 0.917 22 C -0.209 4.209 23 N -0.539 5.539 24 Si 0.880 3.120 25 H -0.206 1.206 26 H -0.219 1.219 27 H -0.225 1.225 28 C -0.016 4.016 29 H 0.078 0.922 30 H 0.088 0.912 31 H 0.081 0.919 32 H 0.094 0.906 33 H 0.096 0.904 34 H 0.199 0.801 35 H 0.092 0.908 36 H 0.107 0.893 37 H 0.105 0.895 38 H 0.190 0.810 39 H 0.233 0.767 40 H 0.092 0.908 41 H 0.097 0.903 42 H 0.211 0.789 43 H 0.097 0.903 44 H 0.099 0.901 45 H 0.057 0.943 46 H 0.048 0.952 47 H 0.076 0.924 48 H 0.046 0.954 49 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 11.499 0.688 -25.181 27.691 hybrid contribution -0.144 1.242 -1.122 1.680 sum 11.355 1.929 -26.303 28.714 Atomic orbital electron populations 1.21817 0.92689 1.02957 1.02794 1.21319 0.97910 1.00671 0.92614 0.88712 1.19660 1.01320 0.97323 0.87628 1.20068 0.97307 1.04059 1.02786 1.23846 0.98276 0.98132 0.92875 1.77374 1.02214 1.09305 1.23167 1.48458 1.14713 1.30193 1.22759 1.21846 1.01609 0.88030 0.92472 1.22362 0.98841 0.97730 0.90124 1.20686 0.79827 0.84540 0.84511 1.90697 1.37975 1.26301 1.86845 1.45996 1.53787 1.32299 1.05868 1.21983 0.99729 0.97057 0.83283 1.22715 0.95837 0.81935 0.93483 1.86624 1.80034 1.21293 1.46144 1.22568 0.99764 0.99270 0.93656 1.21586 0.86145 0.98147 0.93873 1.44527 1.08468 1.79921 0.99318 1.19732 0.97050 1.29043 1.01153 0.91739 1.26068 0.98463 1.03191 0.93176 1.70920 1.38770 1.10446 1.33770 0.84030 0.75501 0.77321 0.75133 1.20572 1.21874 1.22541 1.22279 0.91457 0.98327 0.89518 0.92185 0.91171 0.91867 0.90576 0.90372 0.80082 0.90820 0.89318 0.89477 0.81026 0.76739 0.90764 0.90321 0.78936 0.90279 0.90134 0.94266 0.95167 0.92380 0.95351 0.94041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.15 8.82 37.16 0.33 -0.82 16 2 C -0.10 -0.87 2.71 -91.77 -0.25 -1.12 16 3 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 4 C -0.02 -0.17 4.52 -27.88 -0.13 -0.30 16 5 C -0.23 -1.91 4.77 -105.05 -0.50 -2.41 16 6 C 0.05 0.49 10.65 -17.36 -0.18 0.31 16 7 N -0.30 -3.09 12.58 30.63 0.39 -2.71 16 8 N -0.38 -3.04 4.01 -68.16 -0.27 -3.31 16 9 C 0.10 0.41 11.47 59.85 0.69 1.09 16 10 C 0.06 0.40 11.40 -17.22 -0.20 0.21 16 11 C 0.52 5.97 7.15 -10.99 -0.08 5.89 16 12 O -0.54 -8.20 15.92 5.56 0.09 -8.11 16 13 N -0.73 -8.00 5.09 -60.30 -0.31 -8.31 16 14 C 0.10 1.37 4.88 -4.04 -0.02 1.35 16 15 C 0.10 1.61 0.97 -88.35 -0.09 1.52 16 16 O -0.54 -8.46 13.21 -35.23 -0.47 -8.93 16 17 C -0.11 -1.93 6.15 -24.90 -0.15 -2.08 16 18 C 0.13 2.81 6.04 -3.07 -0.02 2.79 16 19 N -0.60 -14.54 3.05 -169.93 -0.52 -15.06 16 20 C -0.34 -9.77 10.24 -15.06 -0.15 -9.92 16 21 H 0.06 1.95 8.06 -52.48 -0.42 1.52 16 22 C -0.01 -0.15 5.29 -17.43 -0.09 -0.24 16 23 N -0.90 -27.90 13.70 55.49 0.76 -27.14 16 24 Si 1.05 26.28 26.22 -169.99 -4.46 21.82 16 25 H -0.28 -6.57 6.18 56.52 0.35 -6.22 16 26 H -0.29 -7.18 7.11 56.52 0.40 -6.77 16 27 H -0.30 -7.40 7.11 56.52 0.40 -6.99 16 28 C 0.11 2.13 6.22 -2.41 -0.02 2.11 16 29 H 0.06 0.46 7.56 -51.93 -0.39 0.07 16 30 H 0.07 0.53 6.43 -51.93 -0.33 0.20 16 31 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.08 0.69 7.96 -51.93 -0.41 0.28 16 33 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 34 H 0.18 1.26 8.06 -52.49 -0.42 0.84 16 35 H 0.07 0.22 8.14 -51.93 -0.42 -0.20 16 36 H 0.09 0.34 8.14 -51.93 -0.42 -0.09 16 37 H 0.09 0.15 8.14 -51.93 -0.42 -0.27 16 38 H 0.17 0.76 8.06 -52.49 -0.42 0.34 16 39 H 0.40 3.65 6.70 -40.82 -0.27 3.38 16 40 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 41 H 0.08 1.10 8.07 -51.93 -0.42 0.68 16 42 H 0.36 4.27 7.69 45.56 0.35 4.62 16 43 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 44 H 0.08 1.21 8.04 -51.93 -0.42 0.80 16 45 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 46 H 0.03 0.69 3.85 -51.93 -0.20 0.49 16 47 H 0.27 8.14 8.73 -40.82 -0.36 7.78 16 48 H 0.03 0.56 7.99 -51.93 -0.41 0.14 16 49 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 394.10 15.07 5.94 5.94 Total: -1.00 -37.03 394.10 -6.93 -43.96 By element: Atomic # 1 Polarization: 10.67 SS G_CDS: -7.22 Total: 3.46 kcal Atomic # 6 Polarization: -0.76 SS G_CDS: -0.86 Total: -1.62 kcal Atomic # 7 Polarization: -56.56 SS G_CDS: 0.05 Total: -56.52 kcal Atomic # 8 Polarization: -16.66 SS G_CDS: -0.38 Total: -17.04 kcal Atomic # 14 Polarization: 26.28 SS G_CDS: -4.46 Total: 21.82 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -37.03 -6.93 -43.96 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484241811.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.146 kcal (2) G-P(sol) polarization free energy of solvation -37.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.957 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds