Wall clock time and date at job start Tue Mar 31 2020 20:02:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.47051 * 2 1 4 4 C 1.53007 * 109.47000 * 240.00680 * 2 1 3 5 5 C 1.50697 * 109.47392 * 64.99756 * 4 2 1 6 6 C 1.39870 * 126.03900 * 269.69515 * 5 4 2 7 7 N 1.30837 * 108.20097 * 179.81554 * 6 5 4 8 8 N 1.40086 * 108.20574 * 0.43885 * 7 6 5 9 9 C 1.46500 * 126.04028 * 179.70072 * 8 7 6 10 10 C 1.34951 * 107.92493 * 359.71605 * 8 7 6 11 11 C 1.50696 * 109.47545 * 120.00716 * 2 1 3 12 12 O 1.21280 * 120.00466 * 119.99984 * 11 2 1 13 13 N 1.34778 * 119.99928 * 300.00002 * 11 2 1 14 14 C 1.46498 * 120.00405 * 180.02562 * 13 11 2 15 15 C 1.53001 * 109.47139 * 180.02562 * 14 13 11 16 16 O 1.42898 * 110.88633 * 303.87721 * 15 14 13 17 17 C 1.55152 * 111.00408 * 179.97438 * 15 14 13 18 18 C 1.54318 * 102.94511 * 206.38522 * 17 15 14 19 19 N 1.47022 * 107.27253 * 22.18990 * 18 17 15 20 20 C 1.36933 * 125.65341 * 181.02674 * 19 18 17 21 21 H 1.08006 * 120.00444 * 153.90406 * 20 19 18 22 22 C 1.38817 * 119.99751 * 333.90252 * 20 19 18 23 23 N 1.31616 * 120.00100 * 145.63931 * 22 20 19 24 24 Si 1.86797 * 119.99742 * 325.63468 * 22 20 19 25 25 H 1.48495 * 109.47312 * 0.02562 * 24 22 20 26 26 H 1.48500 * 109.46991 * 120.00404 * 24 22 20 27 27 H 1.48502 * 109.47132 * 239.99993 * 24 22 20 28 28 C 1.47424 * 108.69946 * 1.29134 * 19 18 17 29 29 H 1.08997 * 109.47382 * 299.99301 * 1 2 3 30 30 H 1.08999 * 109.47642 * 59.99824 * 1 2 3 31 31 H 1.09001 * 109.47257 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.46960 * 185.00170 * 4 2 1 33 33 H 1.09007 * 109.46980 * 304.99644 * 4 2 1 34 34 H 1.08002 * 125.90084 * 359.97438 * 6 5 4 35 35 H 1.09002 * 109.46968 * 270.02309 * 9 8 7 36 36 H 1.09003 * 109.46803 * 30.01630 * 9 8 7 37 37 H 1.08990 * 109.47522 * 150.02352 * 9 8 7 38 38 H 1.07998 * 126.12477 * 179.97438 * 10 8 7 39 39 H 0.97005 * 119.99678 * 0.02562 * 13 11 2 40 40 H 1.08996 * 109.47372 * 59.99647 * 14 13 11 41 41 H 1.09001 * 109.46705 * 299.99729 * 14 13 11 42 42 H 0.96701 * 113.99994 * 56.12246 * 16 15 14 43 43 H 1.09001 * 110.72609 * 88.01809 * 17 15 14 44 44 H 1.09005 * 110.72274 * 324.74668 * 17 15 14 45 45 H 1.09006 * 109.88476 * 262.77823 * 18 17 15 46 46 H 1.08998 * 109.88900 * 141.61115 * 18 17 15 47 47 H 0.97006 * 120.00091 * 5.05677 * 23 22 20 48 48 H 1.09000 * 110.36988 * 94.48149 * 28 19 18 49 49 H 1.09005 * 110.36594 * 216.80532 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7211 -1.2494 5 6 1.6412 0.0572 -2.4766 6 6 0.4598 -0.1067 -3.2072 7 7 0.4700 0.7480 -4.1978 8 7 1.6646 1.4770 -4.1347 9 6 2.0798 2.5331 -5.0611 10 6 2.3655 1.0342 -3.0699 11 6 2.0324 -0.7105 1.2303 12 8 2.7297 -1.6966 1.1190 13 7 1.7068 -0.2502 2.4545 14 6 2.1957 -0.9405 3.6506 15 6 1.6850 -0.2198 4.8999 16 8 2.0683 1.1567 4.8864 17 6 2.1824 -0.9234 6.1902 18 6 1.1002 -0.5519 7.2256 19 7 -0.1176 -0.2043 6.4788 20 6 -1.3033 0.2021 7.0301 21 1 -1.9809 0.8195 6.4590 22 6 -1.6344 -0.1795 8.3230 23 7 -2.3151 0.6391 9.0969 24 14 -1.1141 -1.8549 8.9645 25 1 -0.3649 -2.5792 7.9066 26 1 -0.2442 -1.6807 10.1554 27 1 -2.3190 -2.6366 9.3419 28 6 0.1474 -0.3720 5.0383 29 1 -0.3634 0.5137 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3634 -1.0277 -0.0005 32 1 3.1263 -0.7994 -1.2057 33 1 1.6053 -1.7198 -1.2954 34 1 -0.3263 -0.8145 -2.9896 35 1 2.6420 2.0934 -5.8850 36 1 1.1980 3.0402 -5.4528 37 1 2.7084 3.2515 -4.5350 38 1 3.3317 1.3947 -2.7491 39 1 1.1488 0.5382 2.5436 40 1 3.2856 -0.9401 3.6504 41 1 1.8327 -1.9683 3.6507 42 1 1.7791 1.6378 4.0989 43 1 3.1547 -0.5336 6.4918 44 1 2.2259 -2.0033 6.0484 45 1 1.4298 0.3033 7.8158 46 1 0.9045 -1.4023 7.8788 47 1 -2.6486 1.4778 8.7413 48 1 -0.1696 -1.3608 4.7068 49 1 -0.3630 0.4027 4.4660 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001484241811.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:02:16 Heat of formation + Delta-G solvation = -12.629875 kcal Electronic energy + Delta-G solvation = -29135.079559 eV Core-core repulsion = 25098.485336 eV Total energy + Delta-G solvation = -4036.594223 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.16442 -41.15471 -39.99554 -36.93027 -36.11007 -35.26321 -34.38598 -33.77899 -31.81211 -31.23641 -29.92247 -28.36464 -27.42862 -26.70777 -25.17010 -23.68123 -22.45961 -21.95791 -21.44898 -21.31571 -20.59406 -19.55232 -18.65053 -17.88152 -17.35763 -17.02893 -16.66359 -16.52303 -16.23817 -16.18766 -15.50209 -15.37602 -15.23636 -15.07493 -14.89160 -14.54028 -14.36729 -14.24884 -13.76119 -13.68319 -13.50354 -13.40614 -13.27867 -13.02853 -12.99043 -12.86052 -12.82677 -12.50581 -12.34100 -12.12381 -11.98043 -11.82210 -11.66248 -11.42269 -11.29011 -11.01811 -10.72751 -10.41675 -10.32323 -10.11898 -9.25394 -9.15708 -8.54756 -5.47906 0.99030 1.44011 1.52980 1.67415 1.71541 1.73161 1.81512 2.20939 2.52436 2.94234 3.12419 3.35593 3.55574 3.66610 3.78434 3.81486 3.87413 3.97650 4.10394 4.14670 4.35970 4.37395 4.42990 4.45708 4.50569 4.57051 4.64791 4.71527 4.73523 4.78637 4.80907 4.86828 4.92207 4.94810 4.97118 4.99667 5.11058 5.23392 5.24960 5.30416 5.37709 5.42686 5.72117 5.74092 6.16381 6.18728 6.48590 6.73925 6.77637 6.83165 7.24125 7.51136 8.21510 8.77181 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.021894 B = 0.002133 C = 0.002068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1278.596761 B =13121.016098 C =13538.009667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.093 4.093 3 H 0.116 0.884 4 C -0.011 4.011 5 C -0.243 4.243 6 C 0.046 3.954 7 N -0.339 5.339 8 N -0.383 5.383 9 C 0.093 3.907 10 C 0.061 3.939 11 C 0.520 3.480 12 O -0.577 6.577 13 N -0.721 5.721 14 C 0.117 3.883 15 C 0.122 3.878 16 O -0.551 6.551 17 C -0.109 4.109 18 C 0.118 3.882 19 N -0.616 5.616 20 C -0.335 4.335 21 H 0.032 0.968 22 C -0.061 4.061 23 N -0.936 5.936 24 Si 1.093 2.907 25 H -0.254 1.254 26 H -0.285 1.285 27 H -0.295 1.295 28 C 0.105 3.895 29 H 0.063 0.937 30 H 0.074 0.926 31 H 0.055 0.945 32 H 0.071 0.929 33 H 0.065 0.935 34 H 0.190 0.810 35 H 0.083 0.917 36 H 0.086 0.914 37 H 0.114 0.886 38 H 0.203 0.797 39 H 0.408 0.592 40 H 0.081 0.919 41 H 0.076 0.924 42 H 0.382 0.618 43 H 0.098 0.902 44 H 0.105 0.895 45 H 0.016 0.984 46 H 0.027 0.973 47 H 0.251 0.749 48 H 0.035 0.965 49 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.700 1.496 -27.504 30.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.114 4.114 3 H 0.133 0.867 4 C -0.051 4.051 5 C -0.255 4.255 6 C -0.139 4.139 7 N -0.161 5.161 8 N -0.165 5.165 9 C -0.047 4.047 10 C -0.086 4.086 11 C 0.308 3.692 12 O -0.457 6.457 13 N -0.374 5.374 14 C -0.008 4.008 15 C 0.079 3.921 16 O -0.358 6.358 17 C -0.147 4.147 18 C -0.007 4.007 19 N -0.343 5.343 20 C -0.463 4.463 21 H 0.050 0.950 22 C -0.258 4.258 23 N -0.577 5.577 24 Si 0.918 3.082 25 H -0.179 1.179 26 H -0.212 1.212 27 H -0.223 1.223 28 C -0.020 4.020 29 H 0.082 0.918 30 H 0.093 0.907 31 H 0.074 0.926 32 H 0.090 0.910 33 H 0.084 0.916 34 H 0.207 0.793 35 H 0.102 0.898 36 H 0.105 0.895 37 H 0.132 0.868 38 H 0.220 0.780 39 H 0.244 0.756 40 H 0.100 0.900 41 H 0.094 0.906 42 H 0.231 0.769 43 H 0.117 0.883 44 H 0.123 0.877 45 H 0.034 0.966 46 H 0.045 0.955 47 H 0.061 0.939 48 H 0.053 0.947 49 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 13.784 0.313 -26.792 30.132 hybrid contribution -0.851 1.501 -0.758 1.884 sum 12.933 1.814 -27.550 30.489 Atomic orbital electron populations 1.21786 0.92287 1.02632 1.03172 1.21293 0.97999 1.01220 0.90915 0.86652 1.19522 1.00847 0.96797 0.87887 1.20060 0.97503 1.04893 1.03031 1.24083 0.98913 0.98115 0.92783 1.77313 1.04015 1.10543 1.24240 1.48789 1.14065 1.30353 1.23275 1.22157 1.02100 0.87745 0.92700 1.22854 0.99483 0.96879 0.89334 1.21166 0.78970 0.83988 0.85117 1.90688 1.39705 1.27975 1.87310 1.45927 1.53688 1.32442 1.05305 1.21729 0.99967 0.96498 0.82593 1.22442 0.92866 0.82364 0.94393 1.86597 1.79956 1.21475 1.47736 1.22603 0.98663 1.01086 0.92333 1.21716 0.86765 0.97033 0.95191 1.44611 1.07862 1.79955 1.01899 1.19619 0.98029 1.27685 1.00998 0.94995 1.27240 0.98867 1.05572 0.94150 1.71040 1.41421 1.10698 1.34535 0.83468 0.75665 0.73462 0.75593 1.17860 1.21208 1.22328 1.22485 0.94492 0.98629 0.86382 0.91812 0.90745 0.92592 0.90992 0.91631 0.79277 0.89808 0.89477 0.86773 0.78035 0.75551 0.90034 0.90622 0.76886 0.88317 0.87661 0.96611 0.95508 0.93917 0.94704 0.93771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.98 8.82 71.98 0.63 -1.34 16 2 C -0.09 -1.35 2.71 -11.54 -0.03 -1.38 16 3 H 0.12 1.25 8.14 -2.39 -0.02 1.23 16 4 C -0.01 -0.18 4.52 29.85 0.13 -0.04 16 5 C -0.24 -3.65 4.77 -20.14 -0.10 -3.75 16 6 C 0.05 0.80 10.65 85.24 0.91 1.71 16 7 N -0.34 -6.76 12.58 -57.02 -0.72 -7.48 16 8 N -0.38 -5.45 4.01 -369.57 -1.48 -6.94 16 9 C 0.09 0.55 11.47 127.77 1.47 2.01 16 10 C 0.06 0.75 11.40 83.54 0.95 1.70 16 11 C 0.52 10.76 7.15 87.66 0.63 11.39 16 12 O -0.58 -16.41 15.92 -3.03 -0.05 -16.46 16 13 N -0.72 -13.80 5.09 -463.07 -2.36 -16.16 16 14 C 0.12 2.70 4.88 86.38 0.42 3.12 16 15 C 0.12 3.47 0.97 -9.33 -0.01 3.46 16 16 O -0.55 -15.85 13.21 -148.98 -1.97 -17.81 16 17 C -0.11 -3.33 6.15 31.78 0.20 -3.13 16 18 C 0.12 5.01 6.04 86.73 0.52 5.54 16 19 N -0.62 -29.66 3.05 -691.54 -2.11 -31.77 16 20 C -0.33 -19.42 10.24 84.04 0.86 -18.56 16 21 H 0.03 2.02 8.06 -2.91 -0.02 1.99 16 22 C -0.06 -3.62 5.29 84.86 0.45 -3.17 16 23 N -0.94 -59.74 13.70 21.65 0.30 -59.45 16 24 Si 1.09 53.02 26.22 68.60 1.80 54.82 16 25 H -0.25 -11.12 6.18 99.48 0.61 -10.50 16 26 H -0.29 -13.47 7.11 99.48 0.71 -12.77 16 27 H -0.30 -14.13 7.11 99.48 0.71 -13.42 16 28 C 0.11 3.87 6.22 86.93 0.54 4.41 16 29 H 0.06 0.84 7.56 -2.39 -0.02 0.82 16 30 H 0.07 1.01 6.43 -2.39 -0.02 1.00 16 31 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 32 H 0.07 1.18 7.96 -2.39 -0.02 1.16 16 33 H 0.06 1.18 8.14 -2.38 -0.02 1.16 16 34 H 0.19 2.61 8.06 -2.91 -0.02 2.58 16 35 H 0.08 0.33 8.14 -2.39 -0.02 0.31 16 36 H 0.09 0.54 8.14 -2.39 -0.02 0.52 16 37 H 0.11 0.04 8.14 -2.39 -0.02 0.02 16 38 H 0.20 1.05 8.06 -2.91 -0.02 1.02 16 39 H 0.41 6.26 6.70 -92.70 -0.62 5.64 16 40 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 41 H 0.08 1.86 8.07 -2.39 -0.02 1.84 16 42 H 0.38 7.82 7.69 -74.06 -0.57 7.25 16 43 H 0.10 2.67 8.14 -2.39 -0.02 2.65 16 44 H 0.11 2.73 8.04 -2.38 -0.02 2.71 16 45 H 0.02 0.74 8.14 -2.38 -0.02 0.72 16 46 H 0.03 1.18 3.85 -2.39 -0.01 1.17 16 47 H 0.25 16.13 8.73 -92.70 -0.81 15.32 16 48 H 0.04 1.27 7.99 -2.39 -0.02 1.25 16 49 H 0.04 1.58 8.14 -2.38 -0.02 1.56 16 Total: -1.00 -82.01 394.10 0.63 -81.37 By element: Atomic # 1 Polarization: 18.28 SS G_CDS: -0.36 Total: 17.93 kcal Atomic # 6 Polarization: -5.62 SS G_CDS: 7.58 Total: 1.95 kcal Atomic # 7 Polarization: -115.42 SS G_CDS: -6.37 Total: -121.80 kcal Atomic # 8 Polarization: -32.26 SS G_CDS: -2.02 Total: -34.27 kcal Atomic # 14 Polarization: 53.02 SS G_CDS: 1.80 Total: 54.82 kcal Total: -82.01 0.63 -81.37 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484241811.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.745 kcal (2) G-P(sol) polarization free energy of solvation -82.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.375 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds