Wall clock time and date at job start Tue Mar 31 2020 20:02:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.47031 * 2 1 4 4 C 1.52995 * 109.47416 * 120.00299 * 2 1 3 5 5 C 1.50702 * 109.46923 * 295.00068 * 4 2 1 6 6 C 1.39876 * 126.03941 * 90.02729 * 5 4 2 7 7 N 1.30834 * 108.20073 * 180.24343 * 6 5 4 8 8 N 1.40084 * 108.20770 * 359.58566 * 7 6 5 9 9 C 1.46500 * 126.03708 * 180.17238 * 8 7 6 10 10 C 1.34947 * 107.92204 * 0.41501 * 8 7 6 11 11 C 1.50701 * 109.47123 * 240.00509 * 2 1 3 12 12 O 1.21290 * 119.99700 * 239.99756 * 11 2 1 13 13 N 1.34776 * 120.00174 * 59.99821 * 11 2 1 14 14 C 1.46500 * 119.99707 * 180.02562 * 13 11 2 15 15 C 1.53007 * 109.46830 * 180.02562 * 14 13 11 16 16 O 1.42898 * 110.63705 * 303.13795 * 15 14 13 17 17 C 1.55150 * 110.71797 * 179.97438 * 15 14 13 18 18 C 1.54911 * 101.58166 * 206.13023 * 17 15 14 19 19 N 1.47425 * 104.82928 * 37.00898 * 18 17 15 20 20 C 1.36937 * 125.64639 * 155.92036 * 19 18 17 21 21 H 1.08006 * 119.99840 * 179.97438 * 20 19 18 22 22 C 1.38810 * 120.00178 * 359.96851 * 20 19 18 23 23 N 1.31616 * 119.99960 * 0.02562 * 22 20 19 24 24 Si 1.86802 * 120.00153 * 180.02562 * 22 20 19 25 25 H 1.48493 * 109.47201 * 90.00343 * 24 22 20 26 26 H 1.48505 * 109.47098 * 210.00627 * 24 22 20 27 27 H 1.48504 * 109.47044 * 330.00355 * 24 22 20 28 28 C 1.47015 * 108.70450 * 335.87292 * 19 18 17 29 29 H 1.09003 * 109.47089 * 60.00018 * 1 2 3 30 30 H 1.09006 * 109.46718 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47060 * 299.99785 * 1 2 3 32 32 H 1.08997 * 109.47755 * 175.00100 * 4 2 1 33 33 H 1.08997 * 109.47309 * 54.99977 * 4 2 1 34 34 H 1.08002 * 125.89548 * 359.97072 * 6 5 4 35 35 H 1.08995 * 109.47266 * 270.28769 * 9 8 7 36 36 H 1.08996 * 109.47009 * 30.29267 * 9 8 7 37 37 H 1.09011 * 109.46832 * 150.28859 * 9 8 7 38 38 H 1.08009 * 126.12562 * 179.72063 * 10 8 7 39 39 H 0.97002 * 119.99947 * 359.97438 * 13 11 2 40 40 H 1.08999 * 109.47003 * 299.99599 * 14 13 11 41 41 H 1.08992 * 109.47780 * 59.99983 * 14 13 11 42 42 H 0.96698 * 114.00165 * 59.30380 * 16 15 14 43 43 H 1.08995 * 111.00709 * 324.20536 * 17 15 14 44 44 H 1.09001 * 111.00655 * 88.02255 * 17 15 14 45 45 H 1.08998 * 110.36961 * 155.84824 * 18 17 15 46 46 H 1.09001 * 110.36816 * 278.06146 * 18 17 15 47 47 H 0.97003 * 120.00241 * 179.97438 * 23 22 20 48 48 H 1.09001 * 109.88394 * 241.64254 * 28 19 18 49 49 H 1.09000 * 109.88767 * 120.47391 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 1.2491 5 6 1.6414 0.0570 2.4765 6 6 0.4575 -0.1032 3.2040 7 7 0.4680 0.7509 4.1950 8 7 1.6650 1.4762 4.1350 9 6 2.0800 2.5324 5.0615 10 6 2.3657 1.0338 3.0699 11 6 2.0324 -0.7103 -1.2305 12 8 2.7297 -1.6964 -1.1193 13 7 1.7068 -0.2498 -2.4546 14 6 2.1947 -0.9407 -3.6508 15 6 1.6853 -0.2189 -4.9000 16 8 0.2585 -0.1396 -4.8893 17 6 2.1865 -0.9275 -6.1860 18 6 2.1814 0.2386 -7.2058 19 7 2.6137 1.4174 -6.4331 20 6 3.1979 2.5417 -6.9526 21 1 3.4793 3.3548 -6.2998 22 6 3.4286 2.6363 -8.3181 23 7 3.0853 1.6456 -9.1137 24 14 4.2261 4.1697 -9.0267 25 1 5.7011 3.9989 -9.0410 26 1 3.7392 4.3855 -10.4129 27 1 3.8719 5.3439 -8.1893 28 6 2.3128 1.1864 -5.0128 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 3.1264 -0.7995 1.2055 33 1 1.6055 -1.7198 1.2951 34 1 -0.3312 -0.8072 2.9829 35 1 1.7233 3.4959 4.6975 36 1 1.6580 2.3375 6.0473 37 1 3.1679 2.5497 5.1289 38 1 3.3313 1.3952 2.7483 39 1 1.1487 0.5387 -2.5436 40 1 3.2847 -0.9410 -3.6509 41 1 1.8310 -1.9682 -3.6507 42 1 -0.1036 0.3281 -4.1243 43 1 3.1934 -1.3214 -6.0480 44 1 1.4989 -1.7166 -6.4907 45 1 2.8828 0.0376 -8.0155 46 1 1.1778 0.3907 -7.6032 47 1 3.2461 1.7118 -10.0680 48 1 1.6073 1.9371 -4.6564 49 1 3.2311 1.2303 -4.4273 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001484241812.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:02:21 Heat of formation + Delta-G solvation = -11.271444 kcal Electronic energy + Delta-G solvation = -29052.166462 eV Core-core repulsion = 25015.631145 eV Total energy + Delta-G solvation = -4036.535317 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.15521 -41.13609 -39.92132 -36.85333 -36.09680 -35.27007 -34.01667 -33.74328 -31.60258 -31.14907 -29.68862 -28.31253 -27.45369 -26.71510 -25.50185 -23.75885 -22.26802 -21.93787 -21.34873 -21.27280 -20.58000 -18.92532 -18.63385 -17.87662 -17.23699 -16.89060 -16.74190 -16.41703 -16.20888 -15.87455 -15.59271 -15.35298 -15.13537 -15.02413 -14.51829 -14.43224 -14.27299 -13.91384 -13.76217 -13.72294 -13.49988 -13.27969 -13.23836 -12.99045 -12.93376 -12.82077 -12.75450 -12.36745 -12.09595 -12.05374 -12.03002 -11.96454 -11.75609 -11.57621 -11.41632 -10.95272 -10.74515 -10.68680 -10.31243 -10.11342 -9.24493 -8.90310 -7.77423 -5.22491 0.99587 1.47184 1.49271 1.57698 1.69454 1.73586 1.82708 2.22412 2.49143 3.16466 3.32537 3.45825 3.64856 3.73051 3.82102 3.93551 3.97733 4.00312 4.12309 4.16806 4.37147 4.46076 4.51094 4.51778 4.59084 4.61467 4.71659 4.72143 4.75113 4.81923 4.94990 4.95744 4.99764 5.00253 5.03324 5.10731 5.26468 5.33143 5.38885 5.44657 5.46314 5.61691 5.76029 5.80072 6.18425 6.29383 6.51808 6.78685 6.79866 7.09464 7.26474 7.76785 8.40562 9.24585 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.016606 B = 0.002168 C = 0.002002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1685.762995 B =12914.449677 C =13984.586759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.094 4.094 3 H 0.110 0.890 4 C -0.012 4.012 5 C -0.242 4.242 6 C 0.049 3.951 7 N -0.337 5.337 8 N -0.383 5.383 9 C 0.093 3.907 10 C 0.058 3.942 11 C 0.518 3.482 12 O -0.580 6.580 13 N -0.718 5.718 14 C 0.119 3.881 15 C 0.126 3.874 16 O -0.553 6.553 17 C -0.121 4.121 18 C 0.160 3.840 19 N -0.623 5.623 20 C -0.239 4.239 21 H 0.083 0.917 22 C -0.069 4.069 23 N -0.949 5.949 24 Si 0.982 3.018 25 H -0.284 1.284 26 H -0.295 1.295 27 H -0.269 1.269 28 C 0.113 3.887 29 H 0.070 0.930 30 H 0.059 0.941 31 H 0.074 0.926 32 H 0.066 0.934 33 H 0.068 0.932 34 H 0.194 0.806 35 H 0.083 0.917 36 H 0.088 0.912 37 H 0.112 0.888 38 H 0.199 0.801 39 H 0.409 0.591 40 H 0.069 0.931 41 H 0.076 0.924 42 H 0.384 0.616 43 H 0.086 0.914 44 H 0.085 0.915 45 H 0.075 0.925 46 H -0.016 1.016 47 H 0.247 0.753 48 H 0.035 0.965 49 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.893 -0.975 27.014 27.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.116 4.116 3 H 0.128 0.872 4 C -0.051 4.051 5 C -0.254 4.254 6 C -0.136 4.136 7 N -0.160 5.160 8 N -0.165 5.165 9 C -0.047 4.047 10 C -0.088 4.088 11 C 0.306 3.694 12 O -0.460 6.460 13 N -0.371 5.371 14 C -0.006 4.006 15 C 0.085 3.915 16 O -0.360 6.360 17 C -0.160 4.160 18 C 0.034 3.966 19 N -0.349 5.349 20 C -0.368 4.368 21 H 0.101 0.899 22 C -0.262 4.262 23 N -0.599 5.599 24 Si 0.810 3.190 25 H -0.211 1.211 26 H -0.222 1.222 27 H -0.194 1.194 28 C -0.012 4.012 29 H 0.089 0.911 30 H 0.078 0.922 31 H 0.092 0.908 32 H 0.085 0.915 33 H 0.087 0.913 34 H 0.211 0.789 35 H 0.102 0.898 36 H 0.107 0.893 37 H 0.130 0.870 38 H 0.216 0.784 39 H 0.246 0.754 40 H 0.087 0.913 41 H 0.094 0.906 42 H 0.233 0.767 43 H 0.104 0.896 44 H 0.103 0.897 45 H 0.092 0.908 46 H 0.002 0.998 47 H 0.057 0.943 48 H 0.052 0.948 49 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -3.863 -1.315 27.495 27.796 hybrid contribution 0.480 1.082 -1.115 1.627 sum -3.383 -0.232 26.380 26.597 Atomic orbital electron populations 1.21792 0.91544 1.02885 1.03477 1.21307 0.98686 1.00890 0.90687 0.87159 1.19520 1.00668 0.96947 0.87988 1.20053 0.97582 1.04748 1.03016 1.24100 0.98780 0.98026 0.92724 1.77301 1.03759 1.10590 1.24300 1.48773 1.14048 1.30423 1.23254 1.22150 1.02568 0.87496 0.92481 1.22833 0.99611 0.96910 0.89470 1.21243 0.78987 0.83970 0.85192 1.90692 1.39698 1.28262 1.87346 1.45894 1.53815 1.32224 1.05140 1.21716 0.99433 0.96526 0.82887 1.22197 0.80902 0.94079 0.94371 1.86609 1.18913 1.80025 1.50472 1.22897 1.01130 0.98094 0.93850 1.21648 0.96423 0.84412 0.94072 1.44708 1.70726 1.17025 1.02461 1.19454 1.31251 0.94441 0.91642 0.89898 1.25675 1.02608 1.01408 0.96476 1.70053 1.53930 1.32654 1.03235 0.85027 0.77885 0.78914 0.77174 1.21136 1.22203 1.19388 1.22128 0.97545 0.95076 0.86461 0.91145 0.92208 0.90753 0.91504 0.91321 0.78891 0.89806 0.89344 0.86990 0.78435 0.75379 0.91296 0.90604 0.76702 0.89587 0.89655 0.90755 0.99754 0.94320 0.94762 0.94542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.70 8.81 71.98 0.63 -1.07 16 2 C -0.09 -1.44 2.71 -11.54 -0.03 -1.47 16 3 H 0.11 1.41 8.14 -2.38 -0.02 1.39 16 4 C -0.01 -0.20 4.52 29.85 0.13 -0.06 16 5 C -0.24 -3.75 4.78 -20.14 -0.10 -3.85 16 6 C 0.05 0.82 10.63 85.24 0.91 1.73 16 7 N -0.34 -6.65 12.58 -57.02 -0.72 -7.37 16 8 N -0.38 -5.67 4.01 -369.56 -1.48 -7.15 16 9 C 0.09 0.62 11.47 127.77 1.47 2.08 16 10 C 0.06 0.78 11.40 83.54 0.95 1.73 16 11 C 0.52 11.55 7.15 87.66 0.63 12.18 16 12 O -0.58 -17.78 15.92 -3.06 -0.05 -17.83 16 13 N -0.72 -14.98 5.09 -463.05 -2.36 -17.34 16 14 C 0.12 3.18 4.74 86.38 0.41 3.59 16 15 C 0.13 4.03 0.92 -9.61 -0.01 4.02 16 16 O -0.55 -16.72 13.09 -148.98 -1.95 -18.67 16 17 C -0.12 -4.54 6.26 31.98 0.20 -4.34 16 18 C 0.16 7.99 5.88 86.86 0.51 8.50 16 19 N -0.62 -31.70 3.39 -692.00 -2.35 -34.05 16 20 C -0.24 -13.25 10.27 84.03 0.86 -12.39 16 21 H 0.08 4.35 7.83 -2.91 -0.02 4.33 16 22 C -0.07 -3.91 5.49 84.86 0.47 -3.45 16 23 N -0.95 -56.79 10.09 21.65 0.22 -56.57 16 24 Si 0.98 45.32 29.55 68.60 2.03 47.35 16 25 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 26 H -0.30 -13.79 7.11 99.48 0.71 -13.08 16 27 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 28 C 0.11 4.35 6.29 86.73 0.55 4.89 16 29 H 0.07 0.70 7.56 -2.39 -0.02 0.68 16 30 H 0.06 0.78 8.14 -2.38 -0.02 0.76 16 31 H 0.07 0.89 6.42 -2.39 -0.02 0.87 16 32 H 0.07 1.23 7.95 -2.39 -0.02 1.21 16 33 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 34 H 0.19 2.41 8.06 -2.91 -0.02 2.39 16 35 H 0.08 0.41 8.14 -2.39 -0.02 0.39 16 36 H 0.09 0.58 8.14 -2.39 -0.02 0.56 16 37 H 0.11 0.16 8.14 -2.38 -0.02 0.14 16 38 H 0.20 1.43 8.06 -2.91 -0.02 1.41 16 39 H 0.41 6.54 6.68 -92.71 -0.62 5.92 16 40 H 0.07 2.02 8.06 -2.39 -0.02 2.00 16 41 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 42 H 0.38 7.90 7.78 -74.06 -0.58 7.32 16 43 H 0.09 3.05 8.05 -2.39 -0.02 3.03 16 44 H 0.08 2.95 8.14 -2.39 -0.02 2.93 16 45 H 0.07 4.22 5.88 -2.39 -0.01 4.21 16 46 H -0.02 -0.86 8.14 -2.39 -0.02 -0.88 16 47 H 0.25 14.36 8.31 -92.71 -0.77 13.59 16 48 H 0.03 1.24 8.07 -2.39 -0.02 1.23 16 49 H 0.04 1.37 7.76 -2.39 -0.02 1.35 16 Total: -1.00 -78.39 396.15 0.69 -77.70 By element: Atomic # 1 Polarization: 22.06 SS G_CDS: -0.23 Total: 21.83 kcal Atomic # 6 Polarization: 4.53 SS G_CDS: 7.58 Total: 12.11 kcal Atomic # 7 Polarization: -115.80 SS G_CDS: -6.69 Total: -122.49 kcal Atomic # 8 Polarization: -34.49 SS G_CDS: -2.00 Total: -36.49 kcal Atomic # 14 Polarization: 45.32 SS G_CDS: 2.03 Total: 47.35 kcal Total: -78.39 0.69 -77.70 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484241812.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.427 kcal (2) G-P(sol) polarization free energy of solvation -78.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.699 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds