Wall clock time and date at job start Tue Mar 31 2020 19:55:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 109.47709 * 2 1 4 4 C 1.53006 * 109.47120 * 239.99891 * 2 1 3 5 5 C 1.50705 * 109.47033 * 65.00296 * 4 2 1 6 6 C 1.38264 * 119.98770 * 89.99697 * 5 4 2 7 7 C 1.38222 * 120.04725 * 179.97438 * 6 5 4 8 8 C 1.38213 * 120.02877 * 0.02562 * 7 6 5 9 9 C 1.38433 * 119.97463 * 359.97438 * 8 7 6 10 10 F 1.35102 * 120.02831 * 180.02562 * 9 8 7 11 11 C 1.38175 * 119.98133 * 269.72666 * 5 4 2 12 12 C 1.50697 * 109.47150 * 120.00168 * 2 1 3 13 13 O 1.21284 * 120.00165 * 119.99655 * 12 2 1 14 14 N 1.34778 * 119.99849 * 299.99955 * 12 2 1 15 15 C 1.46497 * 120.00108 * 359.72519 * 14 12 2 16 16 C 1.46505 * 119.99660 * 179.97438 * 14 12 2 17 17 C 1.53001 * 109.46903 * 90.00626 * 16 14 12 18 18 C 1.52995 * 109.47146 * 179.97438 * 17 16 14 19 19 N 1.46506 * 109.47155 * 179.97438 * 18 17 16 20 20 C 1.46503 * 119.99850 * 90.00046 * 19 18 17 21 21 C 1.36937 * 120.00019 * 269.99746 * 19 18 17 22 22 H 1.08003 * 119.99514 * 23.04217 * 21 19 18 23 23 C 1.38808 * 119.99982 * 203.04905 * 21 19 18 24 24 N 1.31623 * 120.00057 * 12.93448 * 23 21 19 25 25 Si 1.86802 * 120.00059 * 192.93725 * 23 21 19 26 26 H 1.48502 * 109.46742 * 359.97438 * 25 23 21 27 27 H 1.48497 * 109.47167 * 119.99637 * 25 23 21 28 28 H 1.48496 * 109.47369 * 239.99729 * 25 23 21 29 29 H 1.09004 * 109.47088 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.47082 * 299.99680 * 1 2 3 31 31 H 1.08994 * 109.46863 * 60.00205 * 1 2 3 32 32 H 1.08997 * 109.47218 * 185.00046 * 4 2 1 33 33 H 1.08997 * 109.47162 * 304.99881 * 4 2 1 34 34 H 1.08000 * 119.97536 * 0.02562 * 6 5 4 35 35 H 1.08001 * 119.98219 * 180.02562 * 7 6 5 36 36 H 1.08001 * 120.01273 * 179.97438 * 8 7 6 37 37 H 1.07994 * 120.01968 * 359.97438 * 11 5 4 38 38 H 1.08994 * 109.47113 * 89.99672 * 15 14 12 39 39 H 1.08994 * 109.47146 * 210.00128 * 15 14 12 40 40 H 1.08998 * 109.46845 * 329.99610 * 15 14 12 41 41 H 1.09002 * 109.46908 * 209.99943 * 16 14 12 42 42 H 1.08993 * 109.47541 * 330.00225 * 16 14 12 43 43 H 1.09002 * 109.46781 * 299.99396 * 17 16 14 44 44 H 1.09000 * 109.47665 * 59.99226 * 17 16 14 45 45 H 1.09002 * 109.46872 * 299.99444 * 18 17 16 46 46 H 1.08993 * 109.47335 * 59.99577 * 18 17 16 47 47 H 1.08993 * 109.47295 * 95.12067 * 20 19 18 48 48 H 1.09004 * 109.47013 * 215.12380 * 20 19 18 49 49 H 1.08997 * 109.46975 * 335.12028 * 20 19 18 50 50 H 0.96999 * 119.99856 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 1.6414 0.0570 -2.4767 6 6 2.4819 1.0332 -2.9792 7 6 2.1177 1.7474 -4.1051 8 6 0.9126 1.4870 -4.7297 9 6 0.0703 0.5099 -4.2274 10 9 -1.1078 0.2540 -4.8374 11 6 0.4386 -0.2090 -3.1025 12 6 2.0323 -0.7104 1.2304 13 8 2.7296 -1.6966 1.1191 14 7 1.7067 -0.2500 2.4545 15 6 0.8695 0.9446 2.5890 16 6 2.1947 -0.9410 3.6507 17 6 3.5426 -0.3491 4.0674 18 6 4.0519 -1.0702 5.3169 19 7 5.3428 -0.5038 5.7156 20 6 5.3908 0.6259 6.6471 21 6 6.5047 -1.0305 5.2177 22 1 6.4934 -1.5804 4.2882 23 6 7.6967 -0.8576 5.9075 24 7 7.6813 -0.4186 7.1483 25 14 9.3228 -1.2478 5.0749 26 1 9.0688 -1.7220 3.6908 27 1 10.1636 -0.0246 5.0332 28 1 10.0284 -2.3076 5.8391 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 3.1263 -0.7995 -1.2056 33 1 1.6055 -1.7198 -1.2952 34 1 3.4240 1.2371 -2.4920 35 1 2.7752 2.5094 -4.4970 36 1 0.6281 2.0455 -5.6092 37 1 -0.2155 -0.9748 -2.7127 38 1 -0.1798 0.6513 2.6202 39 1 1.1281 1.4678 3.5095 40 1 1.0374 1.6036 1.7372 41 1 1.4766 -0.8154 4.4611 42 1 2.3154 -2.0022 3.4334 43 1 4.2606 -0.4746 3.2570 44 1 3.4219 0.7122 4.2846 45 1 3.3337 -0.9443 6.1272 46 1 4.1725 -2.1315 5.1001 47 1 5.5367 0.2546 7.6614 48 1 6.2175 1.2836 6.3784 49 1 4.4537 1.1802 6.5944 50 1 8.5144 -0.2975 7.6302 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001484769760.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:55:43 Heat of formation + Delta-G solvation = -40.209187 kcal Electronic energy + Delta-G solvation = -28685.579585 eV Core-core repulsion = 24627.869472 eV Total energy + Delta-G solvation = -4057.710113 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -49.21556 -40.43972 -39.34195 -36.36840 -35.39382 -35.17249 -32.43977 -31.26155 -30.89526 -29.94061 -27.42408 -26.77747 -26.00143 -25.55476 -23.62401 -23.04971 -22.18431 -21.06627 -20.16484 -19.01728 -17.71805 -17.05564 -16.68524 -16.60529 -16.46271 -16.20463 -15.89130 -15.47341 -14.86542 -14.62016 -14.37782 -14.20812 -13.99226 -13.67411 -13.48922 -13.32913 -13.05331 -12.93149 -12.72925 -12.64165 -12.48593 -12.41312 -12.13039 -11.96066 -11.71861 -11.37720 -11.31209 -11.20468 -11.17590 -10.91800 -10.77896 -10.67946 -10.40829 -10.10501 -9.81855 -9.69948 -9.64368 -9.30291 -9.00025 -8.65696 -8.43897 -6.66291 -5.65975 -3.12262 0.78862 0.83170 2.66885 2.98497 3.24300 3.41941 3.49115 3.52698 3.86509 4.20454 4.38665 4.50270 4.56257 4.61641 4.68699 4.75911 4.87463 4.91105 4.99864 5.12857 5.18800 5.31672 5.37852 5.39546 5.43789 5.47167 5.52836 5.56455 5.60939 5.70049 5.74755 5.82420 5.87572 5.91923 5.96004 6.06241 6.11707 6.20126 6.20410 6.49678 6.53658 6.66027 6.77824 6.88123 7.07364 7.41000 7.42181 7.77196 7.88505 8.22210 8.47225 9.31112 9.94687 10.43421 11.38959 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.016071 B = 0.002151 C = 0.001986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1741.870692 B =13015.540850 C =14096.853886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.103 4.103 3 H 0.098 0.902 4 C -0.065 4.065 5 C -0.046 4.046 6 C -0.126 4.126 7 C -0.088 4.088 8 C -0.161 4.161 9 C 0.097 3.903 10 F -0.142 7.142 11 C -0.150 4.150 12 C 0.515 3.485 13 O -0.533 6.533 14 N -0.613 5.613 15 C 0.076 3.924 16 C 0.116 3.884 17 C -0.150 4.150 18 C 0.155 3.845 19 N -0.604 5.604 20 C 0.164 3.836 21 C -0.249 4.249 22 H 0.068 0.932 23 C -0.002 4.002 24 N -0.910 5.910 25 Si 0.903 3.097 26 H -0.278 1.278 27 H -0.290 1.290 28 H -0.290 1.290 29 H 0.060 0.940 30 H 0.073 0.927 31 H 0.068 0.932 32 H 0.088 0.912 33 H 0.083 0.917 34 H 0.131 0.869 35 H 0.133 0.867 36 H 0.133 0.867 37 H 0.135 0.865 38 H 0.058 0.942 39 H 0.073 0.927 40 H 0.071 0.929 41 H 0.071 0.929 42 H 0.081 0.919 43 H 0.063 0.937 44 H 0.051 0.949 45 H 0.034 0.966 46 H 0.047 0.953 47 H 0.030 0.970 48 H 0.039 0.961 49 H -0.004 1.004 50 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.403 6.198 -19.763 28.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.124 4.124 3 H 0.116 0.884 4 C -0.103 4.103 5 C -0.047 4.047 6 C -0.144 4.144 7 C -0.106 4.106 8 C -0.180 4.180 9 C 0.078 3.922 10 F -0.120 7.120 11 C -0.168 4.168 12 C 0.302 3.698 13 O -0.409 6.409 14 N -0.346 5.346 15 C -0.067 4.067 16 C -0.007 4.007 17 C -0.191 4.191 18 C 0.027 3.973 19 N -0.326 5.326 20 C 0.019 3.981 21 C -0.379 4.379 22 H 0.086 0.914 23 C -0.199 4.199 24 N -0.556 5.556 25 Si 0.733 3.267 26 H -0.203 1.203 27 H -0.217 1.217 28 H -0.217 1.217 29 H 0.079 0.921 30 H 0.091 0.909 31 H 0.087 0.913 32 H 0.107 0.893 33 H 0.101 0.899 34 H 0.149 0.851 35 H 0.151 0.849 36 H 0.151 0.849 37 H 0.153 0.847 38 H 0.076 0.924 39 H 0.092 0.908 40 H 0.089 0.911 41 H 0.090 0.910 42 H 0.100 0.900 43 H 0.082 0.918 44 H 0.070 0.930 45 H 0.052 0.948 46 H 0.066 0.934 47 H 0.049 0.951 48 H 0.057 0.943 49 H 0.014 0.986 50 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -18.934 5.686 -19.697 27.906 hybrid contribution 0.710 0.026 -0.482 0.858 sum -18.224 5.712 -20.179 27.783 Atomic orbital electron populations 1.22133 0.93002 1.03069 1.03481 1.21229 0.97719 1.00851 0.92611 0.88389 1.20471 1.02851 0.98104 0.88880 1.19766 0.93073 0.95718 0.96096 1.21227 1.00304 0.96138 0.96753 1.21030 0.95481 0.99014 0.95070 1.21146 0.95421 0.99229 1.02183 1.17715 0.82773 0.97935 0.93782 1.91502 1.44827 1.93394 1.82321 1.21086 0.98218 1.01737 0.95797 1.20527 0.80135 0.84698 0.84403 1.90731 1.37439 1.26436 1.86343 1.47907 1.51378 1.29011 1.06331 1.21942 0.94250 0.87342 1.03183 1.21597 0.96219 0.97665 0.85182 1.22596 0.95041 1.00164 1.01327 1.20628 0.87875 0.96007 0.92777 1.43899 1.00772 1.34910 1.53062 1.20764 0.95016 0.88451 0.93838 1.19251 0.85362 1.30750 1.02495 0.91418 1.25023 0.98409 1.01220 0.95288 1.70083 1.25416 1.51257 1.08842 0.86199 0.84078 0.77505 0.78931 1.20259 1.21695 1.21747 0.92061 0.90877 0.91346 0.89309 0.89860 0.85064 0.84943 0.84933 0.84700 0.92386 0.90839 0.91066 0.91021 0.90038 0.91817 0.92988 0.94782 0.93446 0.95146 0.94266 0.98589 0.93922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.17 8.42 37.16 0.31 -0.85 16 2 C -0.10 -0.96 1.91 -91.77 -0.18 -1.14 16 3 H 0.10 0.82 7.39 -51.93 -0.38 0.43 16 4 C -0.07 -0.62 4.19 -27.88 -0.12 -0.74 16 5 C -0.05 -0.39 4.70 -104.63 -0.49 -0.88 16 6 C -0.13 -0.97 9.70 -39.58 -0.38 -1.36 16 7 C -0.09 -0.60 10.04 -39.60 -0.40 -1.00 16 8 C -0.16 -1.20 10.03 -39.52 -0.40 -1.59 16 9 C 0.10 0.85 7.30 -39.42 -0.29 0.56 16 10 F -0.14 -1.37 17.27 2.25 0.04 -1.33 16 11 C -0.15 -1.24 7.96 -39.51 -0.31 -1.56 16 12 C 0.51 6.89 7.07 -10.99 -0.08 6.82 16 13 O -0.53 -9.44 15.50 5.55 0.09 -9.35 16 14 N -0.61 -7.54 2.87 -181.58 -0.52 -8.06 16 15 C 0.08 0.63 8.81 59.85 0.53 1.15 16 16 C 0.12 1.65 5.40 -4.04 -0.02 1.63 16 17 C -0.15 -2.69 5.86 -26.73 -0.16 -2.85 16 18 C 0.16 3.25 5.64 -4.04 -0.02 3.23 16 19 N -0.60 -15.71 2.92 -181.12 -0.53 -16.24 16 20 C 0.16 4.13 8.98 59.85 0.54 4.67 16 21 C -0.25 -7.12 9.65 -15.06 -0.15 -7.27 16 22 H 0.07 1.94 7.86 -52.48 -0.41 1.53 16 23 C 0.00 -0.05 5.10 -17.43 -0.09 -0.14 16 24 N -0.91 -27.29 10.71 55.49 0.59 -26.70 16 25 Si 0.90 22.61 29.57 -169.99 -5.03 17.58 16 26 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 27 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 28 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 29 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.07 0.46 4.54 -51.93 -0.24 0.22 16 31 H 0.07 0.46 6.28 -51.93 -0.33 0.13 16 32 H 0.09 0.96 7.90 -51.93 -0.41 0.55 16 33 H 0.08 0.83 8.08 -51.93 -0.42 0.41 16 34 H 0.13 0.89 8.06 -52.49 -0.42 0.47 16 35 H 0.13 0.62 8.06 -52.49 -0.42 0.19 16 36 H 0.13 0.76 8.06 -52.49 -0.42 0.34 16 37 H 0.14 0.99 8.05 -52.49 -0.42 0.57 16 38 H 0.06 0.38 6.94 -51.93 -0.36 0.02 16 39 H 0.07 0.60 8.07 -51.93 -0.42 0.18 16 40 H 0.07 0.48 6.02 -51.93 -0.31 0.17 16 41 H 0.07 0.86 8.07 -51.93 -0.42 0.44 16 42 H 0.08 1.29 7.42 -51.93 -0.39 0.90 16 43 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 44 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 45 H 0.03 0.65 8.07 -51.93 -0.42 0.23 16 46 H 0.05 1.02 8.04 -51.93 -0.42 0.60 16 47 H 0.03 0.82 7.34 -51.93 -0.38 0.44 16 48 H 0.04 1.06 7.34 -51.93 -0.38 0.67 16 49 H 0.00 -0.10 8.03 -51.93 -0.42 -0.51 16 50 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 LS Contribution 403.31 15.07 6.08 6.08 Total: -1.00 -33.96 403.31 -9.18 -43.13 By element: Atomic # 1 Polarization: 4.40 SS G_CDS: -8.20 Total: -3.80 kcal Atomic # 6 Polarization: 0.38 SS G_CDS: -1.70 Total: -1.32 kcal Atomic # 7 Polarization: -50.54 SS G_CDS: -0.46 Total: -51.00 kcal Atomic # 8 Polarization: -9.44 SS G_CDS: 0.09 Total: -9.35 kcal Atomic # 9 Polarization: -1.37 SS G_CDS: 0.04 Total: -1.33 kcal Atomic # 14 Polarization: 22.61 SS G_CDS: -5.03 Total: 17.58 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -33.96 -9.18 -43.13 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484769760.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.925 kcal (2) G-P(sol) polarization free energy of solvation -33.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.135 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds