Wall clock time and date at job start Tue Mar 31 2020 19:55:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 109.47709 * 2 1 4 4 C 1.53006 * 109.47120 * 239.99891 * 2 1 3 5 5 C 1.50705 * 109.47033 * 65.00296 * 4 2 1 6 6 C 1.38264 * 119.98770 * 89.99697 * 5 4 2 7 7 C 1.38222 * 120.04725 * 179.97438 * 6 5 4 8 8 C 1.38213 * 120.02877 * 0.02562 * 7 6 5 9 9 C 1.38433 * 119.97463 * 359.97438 * 8 7 6 10 10 F 1.35102 * 120.02831 * 180.02562 * 9 8 7 11 11 C 1.38175 * 119.98133 * 269.72666 * 5 4 2 12 12 C 1.50697 * 109.47150 * 120.00168 * 2 1 3 13 13 O 1.21284 * 120.00165 * 119.99655 * 12 2 1 14 14 N 1.34778 * 119.99849 * 299.99955 * 12 2 1 15 15 C 1.46497 * 120.00108 * 359.72519 * 14 12 2 16 16 C 1.46505 * 119.99660 * 179.97438 * 14 12 2 17 17 C 1.53001 * 109.46903 * 90.00626 * 16 14 12 18 18 C 1.52995 * 109.47146 * 179.97438 * 17 16 14 19 19 N 1.46506 * 109.47155 * 179.97438 * 18 17 16 20 20 C 1.46503 * 119.99850 * 90.00046 * 19 18 17 21 21 C 1.36937 * 120.00019 * 269.99746 * 19 18 17 22 22 H 1.08003 * 119.99514 * 23.04217 * 21 19 18 23 23 C 1.38808 * 119.99982 * 203.04905 * 21 19 18 24 24 N 1.31623 * 120.00057 * 12.93448 * 23 21 19 25 25 Si 1.86802 * 120.00059 * 192.93725 * 23 21 19 26 26 H 1.48502 * 109.46742 * 359.97438 * 25 23 21 27 27 H 1.48497 * 109.47167 * 119.99637 * 25 23 21 28 28 H 1.48496 * 109.47369 * 239.99729 * 25 23 21 29 29 H 1.09004 * 109.47088 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.47082 * 299.99680 * 1 2 3 31 31 H 1.08994 * 109.46863 * 60.00205 * 1 2 3 32 32 H 1.08997 * 109.47218 * 185.00046 * 4 2 1 33 33 H 1.08997 * 109.47162 * 304.99881 * 4 2 1 34 34 H 1.08000 * 119.97536 * 0.02562 * 6 5 4 35 35 H 1.08001 * 119.98219 * 180.02562 * 7 6 5 36 36 H 1.08001 * 120.01273 * 179.97438 * 8 7 6 37 37 H 1.07994 * 120.01968 * 359.97438 * 11 5 4 38 38 H 1.08994 * 109.47113 * 89.99672 * 15 14 12 39 39 H 1.08994 * 109.47146 * 210.00128 * 15 14 12 40 40 H 1.08998 * 109.46845 * 329.99610 * 15 14 12 41 41 H 1.09002 * 109.46908 * 209.99943 * 16 14 12 42 42 H 1.08993 * 109.47541 * 330.00225 * 16 14 12 43 43 H 1.09002 * 109.46781 * 299.99396 * 17 16 14 44 44 H 1.09000 * 109.47665 * 59.99226 * 17 16 14 45 45 H 1.09002 * 109.46872 * 299.99444 * 18 17 16 46 46 H 1.08993 * 109.47335 * 59.99577 * 18 17 16 47 47 H 1.08993 * 109.47295 * 95.12067 * 20 19 18 48 48 H 1.09004 * 109.47013 * 215.12380 * 20 19 18 49 49 H 1.08997 * 109.46975 * 335.12028 * 20 19 18 50 50 H 0.96999 * 119.99856 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 1.6414 0.0570 -2.4767 6 6 2.4819 1.0332 -2.9792 7 6 2.1177 1.7474 -4.1051 8 6 0.9126 1.4870 -4.7297 9 6 0.0703 0.5099 -4.2274 10 9 -1.1078 0.2540 -4.8374 11 6 0.4386 -0.2090 -3.1025 12 6 2.0323 -0.7104 1.2304 13 8 2.7296 -1.6966 1.1191 14 7 1.7067 -0.2500 2.4545 15 6 0.8695 0.9446 2.5890 16 6 2.1947 -0.9410 3.6507 17 6 3.5426 -0.3491 4.0674 18 6 4.0519 -1.0702 5.3169 19 7 5.3428 -0.5038 5.7156 20 6 5.3908 0.6259 6.6471 21 6 6.5047 -1.0305 5.2177 22 1 6.4934 -1.5804 4.2882 23 6 7.6967 -0.8576 5.9075 24 7 7.6813 -0.4186 7.1483 25 14 9.3228 -1.2478 5.0749 26 1 9.0688 -1.7220 3.6908 27 1 10.1636 -0.0246 5.0332 28 1 10.0284 -2.3076 5.8391 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 3.1263 -0.7995 -1.2056 33 1 1.6055 -1.7198 -1.2952 34 1 3.4240 1.2371 -2.4920 35 1 2.7752 2.5094 -4.4970 36 1 0.6281 2.0455 -5.6092 37 1 -0.2155 -0.9748 -2.7127 38 1 -0.1798 0.6513 2.6202 39 1 1.1281 1.4678 3.5095 40 1 1.0374 1.6036 1.7372 41 1 1.4766 -0.8154 4.4611 42 1 2.3154 -2.0022 3.4334 43 1 4.2606 -0.4746 3.2570 44 1 3.4219 0.7122 4.2846 45 1 3.3337 -0.9443 6.1272 46 1 4.1725 -2.1315 5.1001 47 1 5.5367 0.2546 7.6614 48 1 6.2175 1.2836 6.3784 49 1 4.4537 1.1802 6.5944 50 1 8.5144 -0.2975 7.6302 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001484769760.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:55:42 Heat of formation + Delta-G solvation = -58.288490 kcal Electronic energy + Delta-G solvation = -28686.363563 eV Core-core repulsion = 24627.869472 eV Total energy + Delta-G solvation = -4058.494091 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -49.88707 -41.36515 -40.04898 -37.97480 -36.73198 -36.06412 -34.07562 -32.41899 -31.54445 -31.30018 -28.28929 -27.94179 -27.52194 -27.05736 -24.78271 -23.64117 -23.42775 -22.11964 -21.73293 -19.97013 -18.76649 -18.42816 -17.81527 -17.35665 -17.28463 -17.07984 -16.83367 -16.58365 -16.36700 -15.85680 -15.52269 -15.35229 -14.91174 -14.80843 -14.62617 -14.42028 -14.35207 -14.11160 -13.79719 -13.53948 -13.44364 -13.29280 -13.09574 -12.94872 -12.78960 -12.73876 -12.60966 -12.53029 -12.50257 -12.25288 -12.08594 -12.03089 -11.98778 -11.87792 -11.82688 -11.42070 -10.73832 -10.64246 -9.89577 -9.65480 -9.62189 -8.76176 -7.84975 -5.34007 0.17743 0.24937 1.42068 1.43032 1.54567 1.64770 2.06188 2.48828 2.62534 3.22741 3.27065 3.45346 3.69921 3.77687 3.82615 3.92860 4.03093 4.08851 4.19551 4.24474 4.28870 4.37393 4.41588 4.45819 4.54550 4.62282 4.66525 4.71291 4.76336 4.80810 4.85204 4.86853 4.93249 4.97795 4.99798 5.10960 5.15051 5.19025 5.25468 5.27920 5.30979 5.38889 5.50131 5.57990 5.60141 5.62591 5.70356 5.94948 6.31971 6.44465 7.14328 7.20864 7.87354 8.28953 9.17568 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.016071 B = 0.002151 C = 0.001986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1741.870692 B =13015.540850 C =14096.853886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.093 4.093 3 H 0.114 0.886 4 C -0.061 4.061 5 C -0.051 4.051 6 C -0.131 4.131 7 C -0.085 4.085 8 C -0.160 4.160 9 C 0.080 3.920 10 F -0.150 7.150 11 C -0.152 4.152 12 C 0.506 3.494 13 O -0.588 6.588 14 N -0.613 5.613 15 C 0.067 3.933 16 C 0.124 3.876 17 C -0.128 4.128 18 C 0.152 3.848 19 N -0.623 5.623 20 C 0.178 3.822 21 C -0.260 4.260 22 H 0.058 0.942 23 C -0.054 4.054 24 N -0.937 5.937 25 Si 0.966 3.034 26 H -0.273 1.273 27 H -0.286 1.286 28 H -0.288 1.288 29 H 0.054 0.946 30 H 0.089 0.911 31 H 0.078 0.922 32 H 0.069 0.931 33 H 0.072 0.928 34 H 0.138 0.862 35 H 0.158 0.842 36 H 0.150 0.850 37 H 0.139 0.861 38 H 0.083 0.917 39 H 0.079 0.921 40 H 0.088 0.912 41 H 0.105 0.895 42 H 0.060 0.940 43 H 0.023 0.977 44 H 0.059 0.941 45 H 0.061 0.939 46 H 0.033 0.967 47 H 0.006 0.994 48 H 0.011 0.989 49 H 0.036 0.964 50 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.030 7.895 -20.860 30.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.114 4.114 3 H 0.132 0.868 4 C -0.098 4.098 5 C -0.051 4.051 6 C -0.150 4.150 7 C -0.103 4.103 8 C -0.179 4.179 9 C 0.061 3.939 10 F -0.129 7.129 11 C -0.171 4.171 12 C 0.296 3.704 13 O -0.468 6.468 14 N -0.345 5.345 15 C -0.074 4.074 16 C 0.000 4.000 17 C -0.169 4.169 18 C 0.025 3.975 19 N -0.347 5.347 20 C 0.033 3.967 21 C -0.390 4.390 22 H 0.076 0.924 23 C -0.249 4.249 24 N -0.585 5.585 25 Si 0.794 3.206 26 H -0.198 1.198 27 H -0.213 1.213 28 H -0.215 1.215 29 H 0.073 0.927 30 H 0.108 0.892 31 H 0.097 0.903 32 H 0.088 0.912 33 H 0.091 0.909 34 H 0.156 0.844 35 H 0.175 0.825 36 H 0.168 0.832 37 H 0.157 0.843 38 H 0.102 0.898 39 H 0.098 0.902 40 H 0.107 0.893 41 H 0.124 0.876 42 H 0.079 0.921 43 H 0.042 0.958 44 H 0.078 0.922 45 H 0.079 0.921 46 H 0.052 0.948 47 H 0.024 0.976 48 H 0.030 0.970 49 H 0.054 0.946 50 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -20.620 7.410 -20.805 30.215 hybrid contribution 1.164 -0.498 -0.152 1.275 sum -19.456 6.912 -20.957 29.419 Atomic orbital electron populations 1.22113 0.91000 1.03121 1.04777 1.21218 0.99163 1.00756 0.90260 0.86803 1.20350 1.01539 0.98028 0.89919 1.19622 0.93483 0.96171 0.95863 1.21412 1.00429 0.95960 0.97154 1.21307 0.95495 0.99078 0.94384 1.21414 0.95230 0.98683 1.02540 1.17915 0.82936 0.98819 0.94232 1.91479 1.45367 1.93565 1.82493 1.21122 0.98280 1.01851 0.95842 1.21300 0.79224 0.84171 0.85746 1.90705 1.39930 1.28968 1.87178 1.48003 1.51226 1.29925 1.05307 1.22273 0.94843 0.85940 1.04380 1.21376 0.95057 0.96444 0.87085 1.22266 0.96060 1.00334 0.98278 1.20810 0.86498 0.95387 0.94771 1.44175 1.01813 1.35461 1.53205 1.20533 0.95930 0.88025 0.92226 1.19430 0.86882 1.30467 1.02227 0.92399 1.25765 1.01486 1.01707 0.95956 1.70226 1.25949 1.52375 1.09906 0.85219 0.80064 0.77247 0.78055 1.19776 1.21277 1.21499 0.92689 0.89224 0.90320 0.91235 0.90913 0.84402 0.82451 0.83211 0.84286 0.89833 0.90209 0.89298 0.87642 0.92125 0.95786 0.92183 0.92109 0.94843 0.97599 0.96969 0.94574 0.94167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.89 8.42 71.98 0.61 -1.28 16 2 C -0.09 -1.63 1.91 -11.54 -0.02 -1.65 16 3 H 0.11 1.65 7.39 -2.39 -0.02 1.63 16 4 C -0.06 -1.16 4.19 29.85 0.13 -1.04 16 5 C -0.05 -0.81 4.70 -19.87 -0.09 -0.91 16 6 C -0.13 -1.83 9.70 22.27 0.22 -1.61 16 7 C -0.08 -0.96 10.04 22.26 0.22 -0.74 16 8 C -0.16 -2.05 10.03 22.31 0.22 -1.82 16 9 C 0.08 1.29 7.30 22.38 0.16 1.46 16 10 F -0.15 -2.75 17.27 44.97 0.78 -1.98 16 11 C -0.15 -2.39 7.96 22.31 0.18 -2.21 16 12 C 0.51 13.39 7.07 87.66 0.62 14.01 16 13 O -0.59 -21.66 15.50 -3.04 -0.05 -21.70 16 14 N -0.61 -14.03 2.87 -846.78 -2.43 -16.47 16 15 C 0.07 0.87 8.81 127.77 1.13 1.99 16 16 C 0.12 3.37 5.40 86.38 0.47 3.83 16 17 C -0.13 -4.53 5.86 30.59 0.18 -4.35 16 18 C 0.15 6.30 5.64 86.38 0.49 6.79 16 19 N -0.62 -32.63 2.92 -726.94 -2.12 -34.75 16 20 C 0.18 8.93 8.98 127.77 1.15 10.08 16 21 C -0.26 -15.14 9.65 84.03 0.81 -14.33 16 22 H 0.06 3.42 7.86 -2.91 -0.02 3.39 16 23 C -0.05 -3.18 5.10 84.86 0.43 -2.75 16 24 N -0.94 -57.11 10.71 21.65 0.23 -56.88 16 25 Si 0.97 47.19 29.57 68.60 2.03 49.22 16 26 H -0.27 -12.98 7.11 99.48 0.71 -12.28 16 27 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 28 H -0.29 -13.90 7.11 99.48 0.71 -13.19 16 29 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 30 H 0.09 0.80 4.54 -2.39 -0.01 0.79 16 31 H 0.08 0.85 6.28 -2.39 -0.02 0.84 16 32 H 0.07 1.58 7.90 -2.39 -0.02 1.57 16 33 H 0.07 1.52 8.08 -2.39 -0.02 1.50 16 34 H 0.14 1.69 8.06 -2.91 -0.02 1.67 16 35 H 0.16 0.96 8.06 -2.91 -0.02 0.93 16 36 H 0.15 1.34 8.06 -2.91 -0.02 1.31 16 37 H 0.14 1.96 8.05 -2.91 -0.02 1.94 16 38 H 0.08 0.71 6.94 -2.39 -0.02 0.69 16 39 H 0.08 0.99 8.07 -2.39 -0.02 0.97 16 40 H 0.09 0.86 6.02 -2.39 -0.01 0.85 16 41 H 0.11 2.18 8.07 -2.39 -0.02 2.16 16 42 H 0.06 1.93 7.42 -2.39 -0.02 1.91 16 43 H 0.02 1.02 8.14 -2.39 -0.02 1.00 16 44 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 45 H 0.06 2.20 8.07 -2.39 -0.02 2.18 16 46 H 0.03 1.46 8.04 -2.39 -0.02 1.44 16 47 H 0.01 0.32 7.34 -2.39 -0.02 0.30 16 48 H 0.01 0.64 7.34 -2.38 -0.02 0.62 16 49 H 0.04 1.49 8.03 -2.39 -0.02 1.47 16 50 H 0.25 14.61 8.31 -92.71 -0.77 13.84 16 Total: -1.00 -76.06 403.31 6.24 -69.82 By element: Atomic # 1 Polarization: 6.33 SS G_CDS: 0.91 Total: 7.25 kcal Atomic # 6 Polarization: -1.40 SS G_CDS: 6.89 Total: 5.49 kcal Atomic # 7 Polarization: -103.77 SS G_CDS: -4.33 Total: -108.10 kcal Atomic # 8 Polarization: -21.66 SS G_CDS: -0.05 Total: -21.70 kcal Atomic # 9 Polarization: -2.75 SS G_CDS: 0.78 Total: -1.98 kcal Atomic # 14 Polarization: 47.19 SS G_CDS: 2.03 Total: 49.22 kcal Total: -76.06 6.24 -69.82 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484769760.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.536 kcal (2) G-P(sol) polarization free energy of solvation -76.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.824 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds