Wall clock time and date at job start Tue Mar 31 2020 19:34:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08999 * 109.47410 * 2 1 4 4 C 1.50700 * 109.47385 * 120.00023 * 2 1 3 5 5 O 1.21288 * 119.99810 * 100.37125 * 4 2 1 6 6 N 1.34780 * 120.00020 * 280.37776 * 4 2 1 7 7 C 1.46921 * 120.62893 * 355.81730 * 6 4 2 8 8 C 1.53187 * 108.77707 * 233.58840 * 7 6 4 9 9 C 1.53042 * 109.31376 * 305.36893 * 8 7 6 10 10 O 1.42904 * 109.45837 * 301.35844 * 9 8 7 11 11 C 1.53001 * 109.46308 * 181.38636 * 9 8 7 12 12 N 1.46502 * 109.47261 * 185.00072 * 11 9 8 13 13 C 1.36935 * 119.99678 * 179.97438 * 12 11 9 14 14 H 1.07995 * 119.99998 * 0.02562 * 13 12 11 15 15 C 1.38807 * 119.99568 * 179.97438 * 13 12 11 16 16 N 1.31620 * 120.00259 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 119.99871 * 180.02562 * 15 13 12 18 18 H 1.48495 * 109.47188 * 359.97438 * 17 15 13 19 19 H 1.48507 * 109.47224 * 119.99954 * 17 15 13 20 20 H 1.48509 * 109.47318 * 239.99788 * 17 15 13 21 21 C 1.53038 * 109.53915 * 61.36194 * 9 8 7 22 22 C 1.46923 * 120.62810 * 175.79761 * 6 4 2 23 23 C 1.50704 * 109.46974 * 240.00022 * 2 1 3 24 24 C 1.39867 * 126.04116 * 300.02192 * 23 2 1 25 25 N 1.30841 * 108.20158 * 179.97438 * 24 23 2 26 26 N 1.40084 * 108.20483 * 359.97438 * 25 24 23 27 27 C 1.46504 * 126.03522 * 179.97438 * 26 25 24 28 28 C 1.34945 * 107.92539 * 359.76254 * 26 25 24 29 29 H 1.09002 * 109.47285 * 303.26944 * 1 2 3 30 30 H 1.08998 * 109.47223 * 63.27227 * 1 2 3 31 31 H 1.09004 * 109.47052 * 183.26935 * 1 2 3 32 32 H 1.09003 * 109.58232 * 113.80094 * 7 6 4 33 33 H 1.08998 * 109.59049 * 353.37878 * 7 6 4 34 34 H 1.09005 * 109.49990 * 185.41621 * 8 7 6 35 35 H 1.09004 * 109.49552 * 65.32073 * 8 7 6 36 36 H 0.96700 * 113.99453 * 180.02562 * 10 9 8 37 37 H 1.09003 * 109.46472 * 305.00095 * 11 9 8 38 38 H 1.08997 * 109.47197 * 64.99228 * 11 9 8 39 39 H 0.97001 * 119.99553 * 359.97438 * 12 11 9 40 40 H 0.96997 * 120.00305 * 180.02562 * 16 15 13 41 41 H 1.09005 * 109.49715 * 58.58627 * 21 9 8 42 42 H 1.09003 * 109.50071 * 178.68315 * 21 9 8 43 43 H 1.08998 * 109.58761 * 246.19415 * 22 6 4 44 44 H 1.09001 * 109.58944 * 6.62739 * 22 6 4 45 45 H 1.08000 * 125.89656 * 0.02562 * 24 23 2 46 46 H 1.09001 * 109.46715 * 89.97866 * 27 26 25 47 47 H 1.08995 * 109.47065 * 209.97966 * 27 26 25 48 48 H 1.08999 * 109.47020 * 329.97984 * 27 26 25 49 49 H 1.08003 * 126.12527 * 180.23981 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 8 2.4128 -1.8595 1.1543 6 7 2.0588 -0.0688 2.4154 7 6 1.6879 1.3499 2.5070 8 6 2.8231 2.1128 3.1969 9 6 3.1293 1.4549 4.5443 10 8 1.9525 1.4602 5.3551 11 6 4.2392 2.2349 5.2519 12 7 4.6155 1.5390 6.4849 13 6 5.5965 2.0539 7.2896 14 1 6.0925 2.9733 7.0155 15 6 5.9527 1.3948 8.4581 16 7 5.3471 0.2751 8.7929 17 14 7.2904 2.0975 9.5563 18 1 7.8094 3.3552 8.9613 19 1 6.7286 2.3808 10.9015 20 1 8.3972 1.1150 9.6790 21 6 3.5853 0.0118 4.3175 22 6 2.4586 -0.7750 3.6402 23 6 2.0323 -0.7104 -1.2305 24 6 1.7731 -2.0407 -1.5762 25 7 2.3768 -2.2937 -2.7090 26 7 3.0398 -1.1304 -3.1209 27 6 3.8392 -0.9796 -4.3393 28 6 2.8082 -0.1720 -2.1996 29 1 -0.3634 0.5638 0.8592 30 1 -0.3633 0.4622 -0.9178 31 1 -0.3633 -1.0260 0.0586 32 1 0.7724 1.4512 3.0898 33 1 1.5326 1.7523 1.5060 34 1 2.5208 3.1477 3.3576 35 1 3.7134 2.0867 2.5685 36 1 2.0733 1.0581 6.2262 37 1 5.1070 2.3074 4.5962 38 1 3.8823 3.2359 5.4940 39 1 4.1697 0.7134 6.7312 40 1 5.5957 -0.1853 9.6097 41 1 4.4684 0.0054 3.6786 42 1 3.8256 -0.4488 5.2757 43 1 1.6061 -0.8468 4.3155 44 1 2.8121 -1.7745 3.3869 45 1 1.1768 -2.7383 -1.0067 46 1 3.1982 -0.6462 -5.1555 47 1 4.6244 -0.2429 -4.1698 48 1 4.2898 -1.9375 -4.5992 49 1 3.1783 0.8422 -2.2290 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001484971638.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:34:55 Heat of formation + Delta-G solvation = 9.617478 kcal Electronic energy + Delta-G solvation = -29847.656783 eV Core-core repulsion = 25812.027278 eV Total energy + Delta-G solvation = -4035.629505 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.49243 -40.22067 -38.45495 -35.47804 -34.64501 -34.02792 -32.85616 -31.81838 -31.03292 -30.38543 -29.53211 -26.77015 -26.71319 -24.70085 -23.89489 -22.92167 -21.93158 -21.27250 -20.82536 -19.86639 -18.78531 -17.52873 -17.14416 -16.92967 -15.81397 -15.78741 -15.55662 -15.20629 -14.91333 -14.57110 -14.46970 -14.14524 -14.00110 -13.75799 -13.62524 -13.31826 -13.12873 -13.05369 -12.86661 -12.80909 -12.62100 -12.27044 -12.20156 -11.89995 -11.85078 -11.66640 -11.47702 -11.11046 -11.02469 -10.92067 -10.85747 -10.63569 -10.32678 -10.10282 -9.76761 -9.60928 -9.45276 -9.37477 -8.95930 -8.54870 -8.46456 -7.01522 -5.84186 -3.13352 1.71573 2.34430 2.60139 2.76254 3.15933 3.39687 3.45595 3.47668 4.25527 4.46262 4.52192 4.55749 4.58158 4.76007 4.76936 4.82372 4.97282 4.98313 5.05536 5.08275 5.19485 5.21672 5.28468 5.46235 5.48501 5.50391 5.51958 5.55329 5.67284 5.69793 5.82492 5.83875 5.94024 6.02897 6.05227 6.06904 6.14391 6.36258 6.45493 6.52639 6.60644 6.67683 6.76187 6.80934 7.51742 7.57178 7.64699 8.07471 8.28430 8.34549 9.45513 9.99552 10.33554 11.38622 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.020084 B = 0.002339 C = 0.002258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1393.814464 B =11966.275076 C =12395.693202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.030 4.030 3 H 0.096 0.904 4 C 0.518 3.482 5 O -0.538 6.538 6 N -0.607 5.607 7 C 0.112 3.888 8 C -0.118 4.118 9 C 0.130 3.870 10 O -0.562 6.562 11 C 0.128 3.872 12 N -0.730 5.730 13 C -0.240 4.240 14 H 0.071 0.929 15 C -0.012 4.012 16 N -0.933 5.933 17 Si 0.908 3.092 18 H -0.281 1.281 19 H -0.291 1.291 20 H -0.291 1.291 21 C -0.155 4.155 22 C 0.117 3.883 23 C -0.220 4.220 24 C 0.087 3.913 25 N -0.305 5.305 26 N -0.381 5.381 27 C 0.104 3.896 28 C 0.058 3.942 29 H 0.064 0.936 30 H 0.067 0.933 31 H 0.062 0.938 32 H 0.079 0.921 33 H 0.081 0.919 34 H 0.082 0.918 35 H 0.076 0.924 36 H 0.383 0.617 37 H 0.024 0.976 38 H 0.028 0.972 39 H 0.381 0.619 40 H 0.256 0.744 41 H 0.071 0.929 42 H 0.090 0.910 43 H 0.071 0.929 44 H 0.088 0.912 45 H 0.181 0.819 46 H 0.072 0.928 47 H 0.085 0.915 48 H 0.088 0.912 49 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.863 2.113 -23.966 26.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.052 4.052 3 H 0.114 0.886 4 C 0.306 3.694 5 O -0.414 6.414 6 N -0.340 5.340 7 C -0.011 4.011 8 C -0.157 4.157 9 C 0.089 3.911 10 O -0.369 6.369 11 C 0.000 4.000 12 N -0.376 5.376 13 C -0.371 4.371 14 H 0.089 0.911 15 C -0.209 4.209 16 N -0.582 5.582 17 Si 0.739 3.261 18 H -0.206 1.206 19 H -0.218 1.218 20 H -0.218 1.218 21 C -0.194 4.194 22 C -0.005 4.005 23 C -0.232 4.232 24 C -0.100 4.100 25 N -0.126 5.126 26 N -0.163 5.163 27 C -0.038 4.038 28 C -0.088 4.088 29 H 0.083 0.917 30 H 0.086 0.914 31 H 0.081 0.919 32 H 0.097 0.903 33 H 0.100 0.900 34 H 0.100 0.900 35 H 0.095 0.905 36 H 0.232 0.768 37 H 0.042 0.958 38 H 0.046 0.954 39 H 0.216 0.784 40 H 0.066 0.934 41 H 0.090 0.910 42 H 0.108 0.892 43 H 0.089 0.911 44 H 0.106 0.894 45 H 0.198 0.802 46 H 0.091 0.909 47 H 0.104 0.896 48 H 0.106 0.894 49 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -9.431 1.029 -25.514 27.221 hybrid contribution 0.977 0.595 2.003 2.307 sum -8.454 1.625 -23.512 25.038 Atomic orbital electron populations 1.21724 0.92148 1.03005 1.02540 1.19521 0.97173 0.99035 0.89502 0.88573 1.20548 0.77825 0.86984 0.84049 1.90677 1.47581 1.17990 1.85167 1.48125 1.66907 1.11361 1.07608 1.21735 0.98411 0.80040 1.00914 1.21857 0.99098 0.99870 0.94875 1.21270 0.85651 0.93881 0.90256 1.86341 1.34980 1.84448 1.31155 1.21324 0.94282 0.95122 0.89230 1.42345 1.44985 1.28179 1.22098 1.19238 1.11398 1.05501 1.01000 0.91125 1.24738 1.00174 0.97446 0.98493 1.69640 1.44633 1.17991 1.25893 0.86106 0.81365 0.78045 0.80580 1.20579 1.21800 1.21839 1.22520 0.98150 0.96318 1.02386 1.21561 0.97663 0.96451 0.84797 1.19498 1.09064 0.95639 0.99032 1.23673 0.98012 0.95632 0.92646 1.77386 1.13841 1.05693 1.15671 1.48391 1.40431 1.08262 1.19178 1.21815 0.94317 1.04078 0.83571 1.22243 0.99960 0.95646 0.90939 0.91739 0.91436 0.91934 0.90309 0.90044 0.89964 0.90491 0.76771 0.95788 0.95370 0.78395 0.93444 0.91031 0.89166 0.91094 0.89387 0.80239 0.90922 0.89595 0.89372 0.81070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.07 8.91 37.16 0.33 -0.74 16 2 C -0.03 -0.29 2.24 -92.92 -0.21 -0.49 16 3 H 0.10 0.72 6.34 -51.93 -0.33 0.39 16 4 C 0.52 6.82 6.85 -10.98 -0.08 6.75 16 5 O -0.54 -9.08 14.61 5.55 0.08 -9.00 16 6 N -0.61 -7.63 2.97 -172.77 -0.51 -8.14 16 7 C 0.11 1.16 5.47 -3.72 -0.02 1.14 16 8 C -0.12 -1.42 5.11 -26.61 -0.14 -1.56 16 9 C 0.13 2.00 0.71 -90.58 -0.06 1.93 16 10 O -0.56 -8.83 11.70 -35.23 -0.41 -9.24 16 11 C 0.13 2.47 5.43 -4.04 -0.02 2.44 16 12 N -0.73 -17.43 5.07 -59.91 -0.30 -17.73 16 13 C -0.24 -6.54 9.99 -15.06 -0.15 -6.69 16 14 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 15 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 16 N -0.93 -27.36 13.06 55.49 0.72 -26.63 16 17 Si 0.91 22.10 29.55 -169.99 -5.02 17.08 16 18 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 19 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 20 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 21 C -0.16 -2.44 4.88 -26.61 -0.13 -2.57 16 22 C 0.12 1.68 6.20 -3.71 -0.02 1.66 16 23 C -0.22 -2.41 4.57 -105.05 -0.48 -2.89 16 24 C 0.09 1.09 10.53 -17.36 -0.18 0.91 16 25 N -0.30 -4.00 12.58 30.62 0.39 -3.62 16 26 N -0.38 -3.88 4.01 -68.16 -0.27 -4.15 16 27 C 0.10 0.58 11.47 59.85 0.69 1.27 16 28 C 0.06 0.54 11.38 -17.22 -0.20 0.35 16 29 H 0.06 0.45 7.41 -51.93 -0.39 0.07 16 30 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.06 0.54 8.11 -51.93 -0.42 0.12 16 32 H 0.08 0.85 7.81 -51.93 -0.41 0.44 16 33 H 0.08 0.61 5.29 -51.93 -0.27 0.34 16 34 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.38 6.15 8.19 45.56 0.37 6.52 16 37 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.38 9.32 5.55 -40.82 -0.23 9.09 16 40 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 41 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 42 H 0.09 1.61 6.53 -51.93 -0.34 1.27 16 43 H 0.07 0.99 7.81 -51.93 -0.41 0.58 16 44 H 0.09 1.37 7.00 -51.93 -0.36 1.01 16 45 H 0.18 2.15 8.00 -52.49 -0.42 1.73 16 46 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 47 H 0.09 0.29 8.14 -51.93 -0.42 -0.13 16 48 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 49 H 0.17 0.96 8.06 -52.48 -0.42 0.54 16 LS Contribution 389.62 15.07 5.87 5.87 Total: -1.00 -34.72 389.62 -7.20 -41.92 By element: Atomic # 1 Polarization: 19.55 SS G_CDS: -6.97 Total: 12.58 kcal Atomic # 6 Polarization: 1.83 SS G_CDS: -0.77 Total: 1.06 kcal Atomic # 7 Polarization: -60.29 SS G_CDS: 0.02 Total: -60.27 kcal Atomic # 8 Polarization: -17.91 SS G_CDS: -0.33 Total: -18.24 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -34.72 -7.20 -41.92 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484971638.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.538 kcal (2) G-P(sol) polarization free energy of solvation -34.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.920 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds