Wall clock time and date at job start Tue Mar 31 2020 19:34:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08999 * 109.47410 * 2 1 4 4 C 1.50700 * 109.47385 * 120.00023 * 2 1 3 5 5 O 1.21288 * 119.99810 * 100.37125 * 4 2 1 6 6 N 1.34780 * 120.00020 * 280.37776 * 4 2 1 7 7 C 1.46921 * 120.62893 * 355.81730 * 6 4 2 8 8 C 1.53187 * 108.77707 * 233.58840 * 7 6 4 9 9 C 1.53042 * 109.31376 * 305.36893 * 8 7 6 10 10 O 1.42904 * 109.45837 * 301.35844 * 9 8 7 11 11 C 1.53001 * 109.46308 * 181.38636 * 9 8 7 12 12 N 1.46502 * 109.47261 * 185.00072 * 11 9 8 13 13 C 1.36935 * 119.99678 * 179.97438 * 12 11 9 14 14 H 1.07995 * 119.99998 * 0.02562 * 13 12 11 15 15 C 1.38807 * 119.99568 * 179.97438 * 13 12 11 16 16 N 1.31620 * 120.00259 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 119.99871 * 180.02562 * 15 13 12 18 18 H 1.48495 * 109.47188 * 359.97438 * 17 15 13 19 19 H 1.48507 * 109.47224 * 119.99954 * 17 15 13 20 20 H 1.48509 * 109.47318 * 239.99788 * 17 15 13 21 21 C 1.53038 * 109.53915 * 61.36194 * 9 8 7 22 22 C 1.46923 * 120.62810 * 175.79761 * 6 4 2 23 23 C 1.50704 * 109.46974 * 240.00022 * 2 1 3 24 24 C 1.39867 * 126.04116 * 300.02192 * 23 2 1 25 25 N 1.30841 * 108.20158 * 179.97438 * 24 23 2 26 26 N 1.40084 * 108.20483 * 359.97438 * 25 24 23 27 27 C 1.46504 * 126.03522 * 179.97438 * 26 25 24 28 28 C 1.34945 * 107.92539 * 359.76254 * 26 25 24 29 29 H 1.09002 * 109.47285 * 303.26944 * 1 2 3 30 30 H 1.08998 * 109.47223 * 63.27227 * 1 2 3 31 31 H 1.09004 * 109.47052 * 183.26935 * 1 2 3 32 32 H 1.09003 * 109.58232 * 113.80094 * 7 6 4 33 33 H 1.08998 * 109.59049 * 353.37878 * 7 6 4 34 34 H 1.09005 * 109.49990 * 185.41621 * 8 7 6 35 35 H 1.09004 * 109.49552 * 65.32073 * 8 7 6 36 36 H 0.96700 * 113.99453 * 180.02562 * 10 9 8 37 37 H 1.09003 * 109.46472 * 305.00095 * 11 9 8 38 38 H 1.08997 * 109.47197 * 64.99228 * 11 9 8 39 39 H 0.97001 * 119.99553 * 359.97438 * 12 11 9 40 40 H 0.96997 * 120.00305 * 180.02562 * 16 15 13 41 41 H 1.09005 * 109.49715 * 58.58627 * 21 9 8 42 42 H 1.09003 * 109.50071 * 178.68315 * 21 9 8 43 43 H 1.08998 * 109.58761 * 246.19415 * 22 6 4 44 44 H 1.09001 * 109.58944 * 6.62739 * 22 6 4 45 45 H 1.08000 * 125.89656 * 0.02562 * 24 23 2 46 46 H 1.09001 * 109.46715 * 89.97866 * 27 26 25 47 47 H 1.08995 * 109.47065 * 209.97966 * 27 26 25 48 48 H 1.08999 * 109.47020 * 329.97984 * 27 26 25 49 49 H 1.08003 * 126.12527 * 180.23981 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 8 2.4128 -1.8595 1.1543 6 7 2.0588 -0.0688 2.4154 7 6 1.6879 1.3499 2.5070 8 6 2.8231 2.1128 3.1969 9 6 3.1293 1.4549 4.5443 10 8 1.9525 1.4602 5.3551 11 6 4.2392 2.2349 5.2519 12 7 4.6155 1.5390 6.4849 13 6 5.5965 2.0539 7.2896 14 1 6.0925 2.9733 7.0155 15 6 5.9527 1.3948 8.4581 16 7 5.3471 0.2751 8.7929 17 14 7.2904 2.0975 9.5563 18 1 7.8094 3.3552 8.9613 19 1 6.7286 2.3808 10.9015 20 1 8.3972 1.1150 9.6790 21 6 3.5853 0.0118 4.3175 22 6 2.4586 -0.7750 3.6402 23 6 2.0323 -0.7104 -1.2305 24 6 1.7731 -2.0407 -1.5762 25 7 2.3768 -2.2937 -2.7090 26 7 3.0398 -1.1304 -3.1209 27 6 3.8392 -0.9796 -4.3393 28 6 2.8082 -0.1720 -2.1996 29 1 -0.3634 0.5638 0.8592 30 1 -0.3633 0.4622 -0.9178 31 1 -0.3633 -1.0260 0.0586 32 1 0.7724 1.4512 3.0898 33 1 1.5326 1.7523 1.5060 34 1 2.5208 3.1477 3.3576 35 1 3.7134 2.0867 2.5685 36 1 2.0733 1.0581 6.2262 37 1 5.1070 2.3074 4.5962 38 1 3.8823 3.2359 5.4940 39 1 4.1697 0.7134 6.7312 40 1 5.5957 -0.1853 9.6097 41 1 4.4684 0.0054 3.6786 42 1 3.8256 -0.4488 5.2757 43 1 1.6061 -0.8468 4.3155 44 1 2.8121 -1.7745 3.3869 45 1 1.1768 -2.7383 -1.0067 46 1 3.1982 -0.6462 -5.1555 47 1 4.6244 -0.2429 -4.1698 48 1 4.2898 -1.9375 -4.5992 49 1 3.1783 0.8422 -2.2290 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001484971638.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:34:54 Heat of formation + Delta-G solvation = -15.901940 kcal Electronic energy + Delta-G solvation = -29848.763388 eV Core-core repulsion = 25812.027278 eV Total energy + Delta-G solvation = -4036.736110 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.27503 -41.27016 -39.65481 -36.75046 -35.76586 -35.40555 -33.64356 -33.33377 -32.16985 -31.87750 -30.27132 -28.24589 -27.32891 -25.83640 -25.33362 -24.01287 -23.29619 -22.04551 -21.80131 -20.93174 -19.74627 -19.42815 -18.13444 -17.70015 -17.20355 -16.77467 -16.62706 -16.35212 -16.10750 -15.86048 -15.64271 -15.30651 -14.97748 -14.87667 -14.79362 -14.57352 -14.34522 -14.16516 -13.79266 -13.63112 -13.39559 -13.31928 -13.16023 -13.04394 -12.94993 -12.80863 -12.70074 -12.46990 -12.43574 -12.25568 -12.10250 -12.03970 -11.95052 -11.43423 -11.28251 -10.99099 -10.73234 -10.58946 -10.27826 -9.55177 -9.29357 -9.02274 -7.97366 -5.25712 0.99540 1.46990 1.47352 1.57122 1.65925 1.77643 1.80770 2.21798 2.54365 3.28841 3.41664 3.57283 3.63801 3.72313 3.84301 3.93902 4.03200 4.07417 4.21901 4.23761 4.30899 4.32837 4.38401 4.44973 4.47661 4.62294 4.65147 4.71542 4.77821 4.83757 4.87425 4.88243 4.89830 4.97091 5.02754 5.05773 5.11194 5.16105 5.22237 5.38551 5.40608 5.48960 5.61730 5.70571 6.20490 6.24795 6.55395 6.74450 6.77690 7.29091 7.32208 8.05036 8.28249 9.25736 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.020084 B = 0.002339 C = 0.002258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1393.814464 B =11966.275076 C =12395.693202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.019 4.019 3 H 0.130 0.870 4 C 0.513 3.487 5 O -0.584 6.584 6 N -0.605 5.605 7 C 0.113 3.887 8 C -0.116 4.116 9 C 0.138 3.862 10 O -0.559 6.559 11 C 0.127 3.873 12 N -0.740 5.740 13 C -0.244 4.244 14 H 0.074 0.926 15 C -0.072 4.072 16 N -0.966 5.966 17 Si 0.970 3.030 18 H -0.267 1.267 19 H -0.293 1.293 20 H -0.296 1.296 21 C -0.145 4.145 22 C 0.125 3.875 23 C -0.242 4.242 24 C 0.067 3.933 25 N -0.347 5.347 26 N -0.383 5.383 27 C 0.094 3.906 28 C 0.070 3.930 29 H 0.077 0.923 30 H 0.085 0.915 31 H 0.044 0.956 32 H 0.081 0.919 33 H 0.123 0.877 34 H 0.100 0.900 35 H 0.086 0.914 36 H 0.380 0.620 37 H 0.025 0.975 38 H 0.028 0.972 39 H 0.375 0.625 40 H 0.251 0.749 41 H 0.060 0.940 42 H 0.061 0.939 43 H 0.074 0.926 44 H 0.068 0.932 45 H 0.168 0.832 46 H 0.090 0.910 47 H 0.115 0.885 48 H 0.082 0.918 49 H 0.215 0.785 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.046 5.224 -25.962 28.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.041 4.041 3 H 0.148 0.852 4 C 0.303 3.697 5 O -0.463 6.463 6 N -0.337 5.337 7 C -0.008 4.008 8 C -0.154 4.154 9 C 0.097 3.903 10 O -0.366 6.366 11 C 0.000 4.000 12 N -0.384 5.384 13 C -0.375 4.375 14 H 0.092 0.908 15 C -0.265 4.265 16 N -0.617 5.617 17 Si 0.800 3.200 18 H -0.191 1.191 19 H -0.220 1.220 20 H -0.223 1.223 21 C -0.184 4.184 22 C 0.002 3.998 23 C -0.253 4.253 24 C -0.118 4.118 25 N -0.169 5.169 26 N -0.165 5.165 27 C -0.046 4.046 28 C -0.078 4.078 29 H 0.096 0.904 30 H 0.104 0.896 31 H 0.063 0.937 32 H 0.099 0.901 33 H 0.140 0.860 34 H 0.118 0.882 35 H 0.104 0.896 36 H 0.228 0.772 37 H 0.043 0.957 38 H 0.046 0.954 39 H 0.209 0.791 40 H 0.060 0.940 41 H 0.079 0.921 42 H 0.080 0.920 43 H 0.092 0.908 44 H 0.086 0.914 45 H 0.185 0.815 46 H 0.108 0.892 47 H 0.133 0.867 48 H 0.101 0.899 49 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges -9.629 4.186 -27.554 29.487 hybrid contribution 1.065 -0.362 2.542 2.779 sum -8.564 3.824 -25.012 26.713 Atomic orbital electron populations 1.21727 0.90839 1.02411 1.04042 1.19560 0.98044 0.99747 0.86714 0.85241 1.21327 0.76833 0.86600 0.84963 1.90665 1.49573 1.20223 1.85856 1.48200 1.66444 1.12335 1.06761 1.21939 0.97533 0.78198 1.03144 1.21914 1.00319 1.00641 0.92550 1.21272 0.84363 0.93047 0.91581 1.86348 1.34924 1.84281 1.31032 1.21506 0.95617 0.95175 0.87706 1.42507 1.44388 1.28243 1.23306 1.19608 1.11485 1.05254 1.01187 0.90832 1.25510 1.02689 0.98115 1.00189 1.69784 1.46298 1.19351 1.26249 0.85117 0.78633 0.77661 0.78596 1.19132 1.21994 1.22287 1.22364 0.98310 0.96961 1.00757 1.21302 0.97093 0.95586 0.85814 1.19726 1.10270 0.95109 1.00239 1.23692 0.98468 0.96776 0.92891 1.77295 1.15323 1.07875 1.16417 1.48778 1.39890 1.07582 1.20242 1.22173 0.94979 1.04808 0.82642 1.22905 0.98271 0.96938 0.89640 0.90441 0.89611 0.93701 0.90079 0.85963 0.88176 0.89568 0.77184 0.95702 0.95422 0.79091 0.93985 0.92106 0.92050 0.90825 0.91351 0.81456 0.89160 0.86691 0.89911 0.76803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.71 8.91 71.98 0.64 -1.07 16 2 C -0.02 -0.30 2.24 -12.29 -0.03 -0.33 16 3 H 0.13 1.21 6.34 -2.39 -0.02 1.20 16 4 C 0.51 12.89 6.85 87.66 0.60 13.49 16 5 O -0.58 -20.18 14.61 -3.05 -0.04 -20.22 16 6 N -0.60 -14.21 2.97 -818.91 -2.43 -16.64 16 7 C 0.11 1.92 5.47 86.36 0.47 2.39 16 8 C -0.12 -2.39 5.11 30.67 0.16 -2.23 16 9 C 0.14 4.08 0.71 -10.77 -0.01 4.07 16 10 O -0.56 -16.98 11.70 -148.98 -1.74 -18.72 16 11 C 0.13 4.76 5.43 86.38 0.47 5.23 16 12 N -0.74 -35.61 5.07 -343.46 -1.74 -37.35 16 13 C -0.24 -13.25 9.99 84.03 0.84 -12.41 16 14 H 0.07 3.88 7.83 -2.91 -0.02 3.86 16 15 C -0.07 -4.08 5.50 84.86 0.47 -3.62 16 16 N -0.97 -57.76 13.06 21.65 0.28 -57.48 16 17 Si 0.97 45.60 29.55 68.60 2.03 47.63 16 18 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 19 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 20 H -0.30 -13.98 7.11 99.48 0.71 -13.28 16 21 C -0.15 -4.63 4.88 30.67 0.15 -4.48 16 22 C 0.13 3.62 6.20 86.37 0.54 4.15 16 23 C -0.24 -4.85 4.57 -20.14 -0.09 -4.94 16 24 C 0.07 1.72 10.53 85.23 0.90 2.62 16 25 N -0.35 -9.18 12.58 -57.02 -0.72 -9.90 16 26 N -0.38 -7.10 4.01 -369.56 -1.48 -8.58 16 27 C 0.09 0.83 11.47 127.77 1.47 2.30 16 28 C 0.07 1.07 11.38 83.54 0.95 2.02 16 29 H 0.08 0.80 7.41 -2.39 -0.02 0.78 16 30 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 31 H 0.04 0.74 8.11 -2.39 -0.02 0.72 16 32 H 0.08 1.42 7.81 -2.39 -0.02 1.40 16 33 H 0.12 1.12 5.29 -2.39 -0.01 1.11 16 34 H 0.10 1.78 8.14 -2.38 -0.02 1.76 16 35 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 36 H 0.38 12.26 8.19 -74.06 -0.61 11.65 16 37 H 0.03 0.95 8.14 -2.39 -0.02 0.93 16 38 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16 39 H 0.38 18.85 5.55 -92.71 -0.51 18.34 16 40 H 0.25 14.63 8.31 -92.71 -0.77 13.86 16 41 H 0.06 2.04 8.14 -2.38 -0.02 2.02 16 42 H 0.06 2.31 6.53 -2.39 -0.02 2.29 16 43 H 0.07 2.07 7.81 -2.39 -0.02 2.06 16 44 H 0.07 2.25 7.00 -2.39 -0.02 2.23 16 45 H 0.17 4.41 8.00 -2.91 -0.02 4.39 16 46 H 0.09 0.50 8.14 -2.39 -0.02 0.48 16 47 H 0.11 0.35 8.14 -2.39 -0.02 0.33 16 48 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 49 H 0.22 1.23 8.06 -2.91 -0.02 1.20 16 Total: -1.00 -78.05 389.62 1.52 -76.54 By element: Atomic # 1 Polarization: 37.67 SS G_CDS: -0.15 Total: 37.52 kcal Atomic # 6 Polarization: -0.32 SS G_CDS: 7.52 Total: 7.20 kcal Atomic # 7 Polarization: -123.85 SS G_CDS: -6.09 Total: -129.94 kcal Atomic # 8 Polarization: -37.16 SS G_CDS: -1.79 Total: -38.95 kcal Atomic # 14 Polarization: 45.60 SS G_CDS: 2.03 Total: 47.63 kcal Total: -78.05 1.52 -76.54 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484971638.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.637 kcal (2) G-P(sol) polarization free energy of solvation -78.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.538 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds