Wall clock time and date at job start Tue Mar 31 2020 20:04:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.47228 * 2 1 4 4 C 1.53004 * 109.47157 * 119.99910 * 2 1 3 5 5 C 1.50694 * 109.47181 * 295.00258 * 4 2 1 6 6 C 1.39872 * 126.04065 * 269.69327 * 5 4 2 7 7 N 1.30840 * 108.20221 * 179.81610 * 6 5 4 8 8 N 1.40079 * 108.20442 * 0.43935 * 7 6 5 9 9 C 1.46507 * 126.03615 * 179.74091 * 8 7 6 10 10 C 1.34946 * 107.92621 * 359.71715 * 8 7 6 11 11 C 1.50700 * 109.47471 * 240.00051 * 2 1 3 12 12 O 1.21278 * 120.00045 * 240.00370 * 11 2 1 13 13 N 1.34777 * 120.00141 * 59.99696 * 11 2 1 14 14 C 1.46493 * 120.00384 * 180.02562 * 13 11 2 15 15 C 1.52995 * 109.47444 * 180.02562 * 14 13 11 16 16 H 1.09000 * 109.55628 * 305.12529 * 15 14 13 17 17 C 1.53295 * 109.51674 * 184.99520 * 15 14 13 18 18 N 1.47148 * 108.38958 * 187.77567 * 17 15 14 19 19 C 1.36936 * 120.98227 * 230.52109 * 18 17 15 20 20 H 1.07998 * 119.99980 * 153.73872 * 19 18 17 21 21 C 1.38812 * 120.00037 * 333.72996 * 19 18 17 22 22 N 1.31618 * 119.99920 * 160.05723 * 21 19 18 23 23 Si 1.86807 * 119.99839 * 340.06404 * 21 19 18 24 24 H 1.48503 * 109.46878 * 91.88471 * 23 21 19 25 25 H 1.48492 * 109.46923 * 211.88365 * 23 21 19 26 26 H 1.48498 * 109.46953 * 331.88322 * 23 21 19 27 27 C 1.47154 * 118.03449 * 50.53271 * 18 17 15 28 28 C 1.53297 * 108.38567 * 309.46877 * 27 18 17 29 29 O 1.42957 * 109.22416 * 52.30173 * 28 27 18 30 30 H 1.09008 * 109.46781 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47272 * 299.99612 * 1 2 3 32 32 H 1.08995 * 109.46936 * 60.00639 * 1 2 3 33 33 H 1.09002 * 109.47089 * 55.00144 * 4 2 1 34 34 H 1.09000 * 109.47157 * 175.00249 * 4 2 1 35 35 H 1.07998 * 125.89884 * 359.97438 * 6 5 4 36 36 H 1.09002 * 109.46769 * 269.97438 * 9 8 7 37 37 H 1.08997 * 109.46862 * 29.97399 * 9 8 7 38 38 H 1.09004 * 109.47134 * 149.97206 * 9 8 7 39 39 H 1.08000 * 126.12642 * 179.97438 * 10 8 7 40 40 H 0.96999 * 119.99697 * 0.02562 * 13 11 2 41 41 H 1.08996 * 109.47438 * 59.99355 * 14 13 11 42 42 H 1.09003 * 109.46937 * 299.99897 * 14 13 11 43 43 H 1.09002 * 109.68137 * 307.49717 * 17 15 14 44 44 H 1.08999 * 109.67680 * 68.05180 * 17 15 14 45 45 H 0.97003 * 119.99533 * 180.02562 * 22 21 19 46 46 H 1.09002 * 109.67879 * 189.74472 * 27 18 17 47 47 H 1.08997 * 109.71049 * 69.20924 * 27 18 17 48 48 H 1.09005 * 109.51001 * 292.37407 * 28 27 18 49 49 H 1.08999 * 109.55090 * 172.25204 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6413 0.0570 2.4766 6 6 2.3927 1.0627 3.0934 7 7 1.7179 1.5029 4.1244 8 7 0.5187 0.7832 4.2022 9 6 -0.5264 0.9564 5.2143 10 6 0.4958 -0.0976 3.1800 11 6 2.0324 -0.7104 -1.2304 12 8 2.7296 -1.6965 -1.1191 13 7 1.7068 -0.2500 -2.4546 14 6 2.1947 -0.9408 -3.6507 15 6 1.6854 -0.2192 -4.8999 16 1 0.5993 -0.1375 -4.8567 17 6 2.0900 -1.0103 -6.1491 18 7 1.7559 -0.2069 -7.3358 19 6 1.0376 -0.7434 -8.3708 20 1 0.4447 -0.1021 -9.0061 21 6 1.0717 -2.1114 -8.6036 22 7 0.1187 -2.6828 -9.3091 23 14 2.4701 -3.1414 -7.9155 24 1 2.0860 -3.6695 -6.5818 25 1 2.7495 -4.2737 -8.8346 26 1 3.6862 -2.2995 -7.7832 27 6 2.2168 1.1900 -7.3774 28 6 1.8059 1.8739 -6.0684 29 8 2.2604 1.0882 -4.9640 30 1 -0.3633 -1.0278 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3633 0.5137 -0.8900 33 1 1.6054 -1.7198 1.2952 34 1 3.1263 -0.7994 1.2057 35 1 3.3612 1.4167 2.7725 36 1 -0.3264 0.2978 6.0594 37 1 -0.5345 1.9919 5.5545 38 1 -1.4957 0.7084 4.7817 39 1 -0.2950 -0.8003 2.9626 40 1 1.1494 0.5389 -2.5436 41 1 1.8312 -1.9684 -3.6506 42 1 3.2848 -0.9411 -3.6508 43 1 3.1621 -1.2060 -6.1283 44 1 1.5446 -1.9535 -6.1789 45 1 0.1424 -3.6389 -9.4714 46 1 1.7552 1.7038 -8.2207 47 1 3.3015 1.2163 -7.4806 48 1 0.7202 1.9633 -6.0295 49 1 2.2548 2.8659 -6.0187 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001495873970.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:04:06 Heat of formation + Delta-G solvation = -6.227159 kcal Electronic energy + Delta-G solvation = -29026.164575 eV Core-core repulsion = 24989.847995 eV Total energy + Delta-G solvation = -4036.316580 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.16239 -41.00308 -40.15030 -36.63093 -36.14552 -35.82914 -33.89988 -33.65203 -32.71789 -31.07921 -29.38665 -28.60400 -27.31489 -26.49468 -25.33725 -24.24953 -22.99385 -21.96249 -21.81743 -21.24142 -20.55241 -19.02930 -18.26620 -17.63885 -17.52324 -17.35723 -16.97829 -16.37009 -16.26383 -16.11920 -15.82237 -15.52047 -15.31906 -15.24987 -15.02697 -14.65746 -14.28685 -14.14248 -13.98410 -13.75229 -13.65413 -13.53004 -13.44070 -13.16794 -13.14511 -12.93011 -12.78004 -12.39353 -12.33219 -12.10118 -12.07026 -11.99125 -11.62178 -11.41518 -11.39933 -11.14099 -10.77408 -10.51677 -10.31812 -10.09924 -9.24967 -8.99344 -8.21989 -5.55201 0.98936 1.25234 1.38278 1.45297 1.69478 1.73451 1.81959 2.22007 2.35362 2.68605 2.97925 3.20969 3.64883 3.79171 3.88828 3.95343 4.00947 4.07360 4.12566 4.14991 4.32819 4.37892 4.41814 4.44101 4.46680 4.53296 4.56218 4.59660 4.65808 4.69260 4.71400 4.73101 4.90517 4.91589 4.95924 4.97550 5.04115 5.17072 5.26559 5.29924 5.41001 5.42942 5.74335 5.76459 6.06508 6.18811 6.19440 6.58556 6.77772 6.79651 7.28373 7.51841 7.92775 8.97157 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.022051 B = 0.002136 C = 0.002073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1269.499841 B =13103.207691 C =13503.026549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.093 4.093 3 H 0.110 0.890 4 C -0.012 4.012 5 C -0.243 4.243 6 C 0.043 3.957 7 N -0.337 5.337 8 N -0.382 5.382 9 C 0.092 3.908 10 C 0.065 3.935 11 C 0.513 3.487 12 O -0.585 6.585 13 N -0.711 5.711 14 C 0.135 3.865 15 C 0.082 3.918 16 H 0.071 0.929 17 C 0.095 3.905 18 N -0.622 5.622 19 C -0.249 4.249 20 H 0.062 0.938 21 C -0.030 4.030 22 N -0.951 5.951 23 Si 0.936 3.064 24 H -0.271 1.271 25 H -0.309 1.309 26 H -0.267 1.267 27 C 0.103 3.897 28 C 0.055 3.945 29 O -0.382 6.382 30 H 0.058 0.942 31 H 0.079 0.921 32 H 0.066 0.934 33 H 0.069 0.931 34 H 0.064 0.936 35 H 0.192 0.808 36 H 0.083 0.917 37 H 0.088 0.912 38 H 0.114 0.886 39 H 0.201 0.799 40 H 0.414 0.586 41 H 0.075 0.925 42 H 0.066 0.934 43 H 0.034 0.966 44 H 0.063 0.937 45 H 0.263 0.737 46 H 0.074 0.926 47 H 0.035 0.965 48 H 0.053 0.947 49 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.129 9.917 28.006 29.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.114 4.114 3 H 0.128 0.872 4 C -0.051 4.051 5 C -0.254 4.254 6 C -0.142 4.142 7 N -0.159 5.159 8 N -0.164 5.164 9 C -0.048 4.048 10 C -0.082 4.082 11 C 0.302 3.698 12 O -0.466 6.466 13 N -0.363 5.363 14 C 0.010 3.990 15 C 0.022 3.978 16 H 0.089 0.911 17 C -0.031 4.031 18 N -0.348 5.348 19 C -0.378 4.378 20 H 0.080 0.920 21 C -0.225 4.225 22 N -0.597 5.597 23 Si 0.766 3.234 24 H -0.197 1.197 25 H -0.237 1.237 26 H -0.192 1.192 27 C -0.021 4.021 28 C -0.022 4.022 29 O -0.301 6.301 30 H 0.077 0.923 31 H 0.098 0.902 32 H 0.085 0.915 33 H 0.087 0.913 34 H 0.082 0.918 35 H 0.209 0.791 36 H 0.101 0.899 37 H 0.107 0.893 38 H 0.133 0.867 39 H 0.218 0.782 40 H 0.251 0.749 41 H 0.093 0.907 42 H 0.084 0.916 43 H 0.052 0.948 44 H 0.081 0.919 45 H 0.072 0.928 46 H 0.093 0.907 47 H 0.053 0.947 48 H 0.072 0.928 49 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -1.714 10.030 29.231 30.952 hybrid contribution 0.310 -1.264 -1.436 1.938 sum -1.404 8.766 27.795 29.179 Atomic orbital electron populations 1.21795 0.91470 1.02830 1.03538 1.21270 0.98719 1.00899 0.90523 0.87192 1.19517 1.00719 0.96827 0.88079 1.20031 0.97341 1.05144 1.02928 1.24121 1.00656 0.96259 0.93206 1.77304 0.95492 1.20470 1.22631 1.48799 1.15892 1.28196 1.23508 1.22172 0.87974 1.04605 0.89999 1.22803 1.00227 0.95796 0.89371 1.21334 0.79110 0.84041 0.85364 1.90684 1.39975 1.28470 1.87431 1.45848 1.53528 1.32219 1.04722 1.21156 0.99698 0.95547 0.82631 1.22567 0.97545 0.84342 0.93305 0.91081 1.21944 0.98339 0.95384 0.87400 1.44486 1.63916 1.10143 1.16207 1.18874 1.19484 0.91787 1.07682 0.92043 1.25822 0.99640 0.98098 0.98977 1.69930 1.33366 1.11074 1.45309 0.86100 0.81988 0.78193 0.77162 1.19728 1.23726 1.19179 1.21894 0.97666 0.84145 0.98413 1.23115 0.99361 0.94683 0.85072 1.87841 1.68965 1.25169 1.48138 0.92250 0.90221 0.91506 0.91277 0.91755 0.79099 0.89856 0.89333 0.86734 0.78218 0.74876 0.90662 0.91611 0.94818 0.91868 0.92791 0.90733 0.94669 0.92842 0.85535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.74 8.80 71.98 0.63 -1.10 16 2 C -0.09 -1.54 2.71 -11.54 -0.03 -1.57 16 3 H 0.11 1.59 8.14 -2.39 -0.02 1.57 16 4 C -0.01 -0.22 4.52 29.85 0.13 -0.08 16 5 C -0.24 -3.88 4.82 -20.15 -0.10 -3.97 16 6 C 0.04 0.76 11.96 85.24 1.02 1.78 16 7 N -0.34 -6.76 12.58 -57.02 -0.72 -7.48 16 8 N -0.38 -5.48 4.01 -369.55 -1.48 -6.97 16 9 C 0.09 0.54 11.47 127.77 1.47 2.01 16 10 C 0.06 0.82 10.02 83.54 0.84 1.66 16 11 C 0.51 12.67 7.15 87.66 0.63 13.29 16 12 O -0.59 -19.44 15.92 -3.02 -0.05 -19.49 16 13 N -0.71 -16.90 5.40 -463.09 -2.50 -19.40 16 14 C 0.13 4.01 5.34 86.38 0.46 4.47 16 15 C 0.08 2.69 2.81 30.69 0.09 2.77 16 16 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 17 C 0.10 3.99 3.67 86.35 0.32 4.30 16 18 N -0.62 -28.55 2.84 -697.55 -1.98 -30.53 16 19 C -0.25 -13.77 10.10 84.03 0.85 -12.93 16 20 H 0.06 3.66 8.06 -2.91 -0.02 3.64 16 21 C -0.03 -1.73 5.26 84.86 0.45 -1.28 16 22 N -0.95 -58.76 13.97 21.65 0.30 -58.45 16 23 Si 0.94 46.43 24.28 68.60 1.67 48.09 16 24 H -0.27 -12.62 6.58 99.48 0.65 -11.97 16 25 H -0.31 -15.57 7.11 99.48 0.71 -14.86 16 26 H -0.27 -12.94 6.54 99.48 0.65 -12.29 16 27 C 0.10 3.76 6.73 86.35 0.58 4.34 16 28 C 0.06 1.55 6.98 72.08 0.50 2.06 16 29 O -0.38 -11.69 10.33 -148.98 -1.54 -13.23 16 30 H 0.06 0.78 8.14 -2.38 -0.02 0.76 16 31 H 0.08 0.82 6.42 -2.39 -0.02 0.81 16 32 H 0.07 0.76 7.56 -2.39 -0.02 0.74 16 33 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 34 H 0.06 1.32 7.96 -2.39 -0.02 1.30 16 35 H 0.19 2.69 8.06 -2.91 -0.02 2.66 16 36 H 0.08 0.34 8.14 -2.39 -0.02 0.32 16 37 H 0.09 0.52 8.14 -2.39 -0.02 0.50 16 38 H 0.11 0.03 8.14 -2.38 -0.02 0.01 16 39 H 0.20 1.22 8.06 -2.91 -0.02 1.20 16 40 H 0.41 7.85 7.89 -92.71 -0.73 7.12 16 41 H 0.08 2.36 8.14 -2.39 -0.02 2.34 16 42 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 43 H 0.03 1.44 6.86 -2.39 -0.02 1.43 16 44 H 0.06 2.89 4.61 -2.39 -0.01 2.88 16 45 H 0.26 15.49 8.31 -92.71 -0.77 14.72 16 46 H 0.07 2.64 7.96 -2.39 -0.02 2.62 16 47 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 48 H 0.05 1.49 8.14 -2.38 -0.02 1.47 16 49 H 0.13 2.65 8.14 -2.39 -0.02 2.63 16 Total: -1.00 -76.93 391.37 1.65 -75.28 By element: Atomic # 1 Polarization: 16.32 SS G_CDS: 0.11 Total: 16.43 kcal Atomic # 6 Polarization: 7.92 SS G_CDS: 7.83 Total: 15.75 kcal Atomic # 7 Polarization: -116.46 SS G_CDS: -6.38 Total: -122.84 kcal Atomic # 8 Polarization: -31.13 SS G_CDS: -1.59 Total: -32.72 kcal Atomic # 14 Polarization: 46.43 SS G_CDS: 1.67 Total: 48.09 kcal Total: -76.93 1.65 -75.28 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001495873970.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.058 kcal (2) G-P(sol) polarization free energy of solvation -76.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.285 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds