Wall clock time and date at job start Tue Mar 31 2020 20:04:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08991 * 109.47060 * 2 1 4 4 C 1.52997 * 109.47341 * 239.99172 * 2 1 3 5 5 C 1.50707 * 109.46543 * 65.00059 * 4 2 1 6 6 C 1.39872 * 126.03618 * 90.03004 * 5 4 2 7 7 N 1.30838 * 108.19894 * 179.97438 * 6 5 4 8 8 N 1.40085 * 108.20815 * 0.02562 * 7 6 5 9 9 C 1.46494 * 126.03723 * 180.02562 * 8 7 6 10 10 C 1.34951 * 107.92389 * 0.25575 * 8 7 6 11 11 C 1.50701 * 109.46774 * 119.99585 * 2 1 3 12 12 O 1.21280 * 120.00282 * 120.00365 * 11 2 1 13 13 N 1.34782 * 120.00215 * 299.99898 * 11 2 1 14 14 C 1.46495 * 120.00164 * 180.02562 * 13 11 2 15 15 C 1.53003 * 109.47238 * 180.02562 * 14 13 11 16 16 H 1.09001 * 109.50752 * 305.10148 * 15 14 13 17 17 C 1.53292 * 109.51192 * 185.00117 * 15 14 13 18 18 N 1.47155 * 108.38249 * 187.77154 * 17 15 14 19 19 C 1.36937 * 120.98538 * 230.55424 * 18 17 15 20 20 H 1.08001 * 119.99592 * 26.58754 * 19 18 17 21 21 C 1.38811 * 120.00377 * 206.59244 * 19 18 17 22 22 N 1.31617 * 119.99645 * 17.01847 * 21 19 18 23 23 Si 1.86797 * 119.99964 * 197.02663 * 21 19 18 24 24 H 1.48502 * 109.47215 * 94.14745 * 23 21 19 25 25 H 1.48501 * 109.47077 * 214.14885 * 23 21 19 26 26 H 1.48500 * 109.47097 * 334.14912 * 23 21 19 27 27 C 1.47151 * 118.03469 * 50.53830 * 18 17 15 28 28 C 1.53305 * 108.38374 * 309.46146 * 27 18 17 29 29 O 1.42956 * 109.51286 * 65.25295 * 15 14 13 30 30 H 1.09003 * 109.47426 * 300.00308 * 1 2 3 31 31 H 1.09000 * 109.47090 * 60.00262 * 1 2 3 32 32 H 1.09003 * 109.47416 * 180.02562 * 1 2 3 33 33 H 1.08998 * 109.47396 * 305.00595 * 4 2 1 34 34 H 1.08995 * 109.47373 * 184.99932 * 4 2 1 35 35 H 1.07993 * 125.90095 * 0.02562 * 6 5 4 36 36 H 1.09002 * 109.46928 * 90.02313 * 9 8 7 37 37 H 1.09001 * 109.47477 * 330.01700 * 9 8 7 38 38 H 1.09001 * 109.47105 * 210.01724 * 9 8 7 39 39 H 1.07997 * 126.12498 * 179.74060 * 10 8 7 40 40 H 0.97001 * 119.99366 * 0.02562 * 13 11 2 41 41 H 1.08999 * 109.47402 * 300.00042 * 14 13 11 42 42 H 1.09001 * 109.47058 * 60.00021 * 14 13 11 43 43 H 1.09002 * 109.68286 * 307.49138 * 17 15 14 44 44 H 1.08994 * 109.68241 * 68.01234 * 17 15 14 45 45 H 0.97001 * 119.99623 * 179.97438 * 22 21 19 46 46 H 1.09000 * 109.68732 * 69.18507 * 27 18 17 47 47 H 1.08996 * 109.68354 * 189.70365 * 27 18 17 48 48 H 1.08997 * 109.51065 * 172.23018 * 28 27 18 49 49 H 1.09004 * 109.50964 * 292.38419 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7214 -1.2491 5 6 1.6413 0.0569 -2.4765 6 6 2.3903 1.0662 -3.0902 7 7 1.7185 1.5019 -4.1249 8 7 0.5187 0.7829 -4.2022 9 6 -0.5257 0.9555 -5.2148 10 6 0.4928 -0.0932 -3.1761 11 6 2.0323 -0.7103 1.2305 12 8 2.7295 -1.6964 1.1194 13 7 1.7066 -0.2498 2.4547 14 6 2.1953 -0.9400 3.6509 15 6 1.6847 -0.2191 4.9001 16 1 1.9704 0.8319 4.8562 17 6 2.2958 -0.8641 6.1492 18 7 1.6496 -0.2811 7.3359 19 6 2.3948 0.2181 8.3706 20 1 3.3930 0.5879 8.1879 21 6 1.8674 0.2489 9.6542 22 7 0.8167 -0.4858 9.9517 23 14 2.6486 1.3334 10.9592 24 1 1.9462 2.6410 11.0017 25 1 2.5406 0.6702 12.2835 26 1 4.0802 1.5510 10.6298 27 6 0.1791 -0.2501 7.3776 28 6 -0.3289 0.3650 6.0685 29 8 0.2605 -0.3255 4.9642 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 1.6054 -1.7199 -1.2950 34 1 3.1263 -0.7996 -1.2054 35 1 3.3566 1.4235 -2.7664 36 1 -0.3259 0.2956 -6.0590 37 1 -0.5332 1.9906 -5.5564 38 1 -1.4954 0.7087 -4.7823 39 1 -0.3010 -0.7912 -2.9548 40 1 1.1487 0.5387 2.5435 41 1 1.8324 -1.9678 3.6511 42 1 3.2853 -0.9396 3.6507 43 1 2.1230 -1.9402 6.1286 44 1 3.3669 -0.6648 6.1786 45 1 0.4484 -0.4646 10.8488 46 1 -0.2068 -1.2643 7.4806 47 1 -0.1516 0.3558 8.2211 48 1 -1.4138 0.2717 6.0192 49 1 -0.0512 1.4184 6.0294 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001495873974.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:04:21 Heat of formation + Delta-G solvation = -10.286216 kcal Electronic energy + Delta-G solvation = -28732.871148 eV Core-core repulsion = 24696.378554 eV Total energy + Delta-G solvation = -4036.492594 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.14973 -40.92417 -39.97997 -36.53949 -36.08664 -35.70813 -33.88939 -33.34055 -32.34969 -31.02726 -29.21722 -28.57761 -27.20993 -26.48212 -25.01943 -24.23072 -23.05181 -21.94591 -21.66153 -21.11330 -20.45816 -18.88784 -18.15874 -17.58584 -17.39285 -17.10000 -16.83122 -16.33908 -16.23994 -16.06145 -15.54094 -15.40993 -15.27145 -15.05156 -14.89575 -14.59005 -14.38419 -14.10395 -13.92527 -13.62183 -13.45997 -13.21430 -13.15386 -13.11101 -13.00369 -12.77728 -12.68601 -12.52387 -12.16141 -12.07141 -12.04786 -11.97432 -11.86274 -11.40160 -11.32387 -10.80748 -10.72187 -10.52637 -10.30918 -10.03744 -9.23661 -8.75224 -7.91576 -5.39165 0.99972 1.46974 1.47873 1.57464 1.72948 1.74906 1.83621 2.28123 2.49104 2.79835 3.23384 3.50035 3.67450 3.82424 4.00346 4.02413 4.07880 4.12552 4.17124 4.27082 4.38844 4.47437 4.48202 4.54218 4.56768 4.60323 4.65783 4.71750 4.73012 4.73860 4.80964 4.91265 4.92928 4.99218 5.05027 5.08582 5.24908 5.28637 5.32244 5.43692 5.48066 5.55702 5.61337 5.75745 6.19856 6.26313 6.33671 6.62653 6.78832 7.06114 7.32078 7.74102 8.27834 9.14439 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.028893 B = 0.001829 C = 0.001807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 968.861202 B =15303.103691 C =15487.582827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.094 4.094 3 H 0.110 0.890 4 C -0.012 4.012 5 C -0.243 4.243 6 C 0.043 3.957 7 N -0.338 5.338 8 N -0.382 5.382 9 C 0.092 3.908 10 C 0.064 3.936 11 C 0.514 3.486 12 O -0.585 6.585 13 N -0.713 5.713 14 C 0.141 3.859 15 C 0.080 3.920 16 H 0.069 0.931 17 C 0.116 3.884 18 N -0.612 5.612 19 C -0.266 4.266 20 H 0.072 0.928 21 C -0.050 4.050 22 N -0.936 5.936 23 Si 0.971 3.029 24 H -0.283 1.283 25 H -0.296 1.296 26 H -0.268 1.268 27 C 0.142 3.858 28 C 0.055 3.945 29 O -0.388 6.388 30 H 0.064 0.936 31 H 0.078 0.922 32 H 0.057 0.943 33 H 0.068 0.932 34 H 0.065 0.935 35 H 0.193 0.807 36 H 0.083 0.917 37 H 0.088 0.912 38 H 0.114 0.886 39 H 0.201 0.799 40 H 0.413 0.587 41 H 0.060 0.940 42 H 0.085 0.915 43 H 0.016 0.984 44 H 0.071 0.929 45 H 0.252 0.748 46 H -0.002 1.002 47 H 0.066 0.934 48 H 0.109 0.891 49 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.044 4.475 -28.142 28.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.115 4.115 3 H 0.128 0.872 4 C -0.051 4.051 5 C -0.254 4.254 6 C -0.142 4.142 7 N -0.160 5.160 8 N -0.164 5.164 9 C -0.048 4.048 10 C -0.083 4.083 11 C 0.302 3.698 12 O -0.465 6.465 13 N -0.365 5.365 14 C 0.016 3.984 15 C 0.021 3.979 16 H 0.087 0.913 17 C -0.011 4.011 18 N -0.337 5.337 19 C -0.396 4.396 20 H 0.090 0.910 21 C -0.246 4.246 22 N -0.581 5.581 23 Si 0.799 3.201 24 H -0.209 1.209 25 H -0.223 1.223 26 H -0.192 1.192 27 C 0.017 3.983 28 C -0.023 4.023 29 O -0.307 6.307 30 H 0.083 0.917 31 H 0.097 0.903 32 H 0.076 0.924 33 H 0.087 0.913 34 H 0.084 0.916 35 H 0.210 0.790 36 H 0.102 0.898 37 H 0.106 0.894 38 H 0.133 0.867 39 H 0.217 0.783 40 H 0.249 0.751 41 H 0.078 0.922 42 H 0.103 0.897 43 H 0.034 0.966 44 H 0.089 0.911 45 H 0.061 0.939 46 H 0.016 0.984 47 H 0.085 0.915 48 H 0.127 0.873 49 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -4.864 4.503 -29.304 30.044 hybrid contribution 0.287 0.018 2.243 2.262 sum -4.577 4.521 -27.060 27.815 Atomic orbital electron populations 1.21778 0.91662 1.02710 1.03380 1.21274 0.98577 1.00958 0.90717 0.87173 1.19515 1.00779 0.96778 0.87997 1.20049 0.97256 1.05060 1.03063 1.24125 1.00714 0.96191 0.93178 1.77302 0.95631 1.20491 1.22586 1.48793 1.15813 1.28490 1.23307 1.22168 0.88007 1.04585 0.90003 1.22810 1.00185 0.95868 0.89394 1.21273 0.79137 0.84045 0.85340 1.90680 1.40075 1.28322 1.87435 1.45895 1.53369 1.32279 1.04927 1.21142 0.98992 0.96080 0.82202 1.22632 0.82019 0.99324 0.93967 0.91295 1.21611 0.97232 0.95195 0.87015 1.44340 1.01865 1.69861 1.17615 1.19565 0.99765 1.33321 0.86952 0.90985 1.25835 0.99492 1.00242 0.98986 1.70195 1.27105 1.40831 1.20009 0.85192 0.78560 0.78285 0.78032 1.20944 1.22297 1.19215 1.21316 0.83442 0.97344 0.96217 1.23150 0.98122 0.95058 0.85975 1.87802 1.19620 1.75419 1.47856 0.91701 0.90300 0.92406 0.91334 0.91591 0.79038 0.89841 0.89370 0.86732 0.78255 0.75092 0.92204 0.89670 0.96560 0.91058 0.93940 0.98363 0.91545 0.87288 0.93052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.80 8.80 71.98 0.63 -1.17 16 2 C -0.09 -1.54 2.71 -11.54 -0.03 -1.57 16 3 H 0.11 1.54 8.14 -2.39 -0.02 1.52 16 4 C -0.01 -0.20 4.52 29.85 0.13 -0.06 16 5 C -0.24 -3.84 4.83 -20.14 -0.10 -3.94 16 6 C 0.04 0.76 11.96 85.24 1.02 1.78 16 7 N -0.34 -6.79 12.58 -57.03 -0.72 -7.50 16 8 N -0.38 -5.49 4.01 -369.58 -1.48 -6.98 16 9 C 0.09 0.54 11.47 127.77 1.47 2.01 16 10 C 0.06 0.81 10.00 83.54 0.84 1.65 16 11 C 0.51 12.38 7.15 87.66 0.63 13.01 16 12 O -0.58 -18.86 15.92 -3.03 -0.05 -18.91 16 13 N -0.71 -16.62 5.40 -463.06 -2.50 -19.12 16 14 C 0.14 3.98 5.34 86.38 0.46 4.45 16 15 C 0.08 2.61 2.81 30.69 0.09 2.69 16 16 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 17 C 0.12 4.74 6.02 86.35 0.52 5.26 16 18 N -0.61 -30.41 3.05 -697.54 -2.13 -32.54 16 19 C -0.27 -14.37 9.64 84.03 0.81 -13.56 16 20 H 0.07 3.76 7.89 -2.91 -0.02 3.73 16 21 C -0.05 -2.74 4.94 84.86 0.42 -2.33 16 22 N -0.94 -54.66 11.17 21.65 0.24 -54.42 16 23 Si 0.97 43.93 29.59 68.60 2.03 45.96 16 24 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 25 H -0.30 -13.58 7.11 99.48 0.71 -12.87 16 26 H -0.27 -11.52 7.11 99.48 0.71 -10.82 16 27 C 0.14 6.77 5.44 86.36 0.47 7.24 16 28 C 0.05 1.95 6.99 72.08 0.50 2.46 16 29 O -0.39 -13.38 10.33 -148.98 -1.54 -14.92 16 30 H 0.06 0.82 7.56 -2.39 -0.02 0.80 16 31 H 0.08 0.85 6.40 -2.39 -0.02 0.83 16 32 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 33 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 34 H 0.07 1.31 7.95 -2.39 -0.02 1.29 16 35 H 0.19 2.64 8.06 -2.91 -0.02 2.61 16 36 H 0.08 0.34 8.14 -2.39 -0.02 0.32 16 37 H 0.09 0.53 8.14 -2.39 -0.02 0.51 16 38 H 0.11 0.03 8.14 -2.39 -0.02 0.01 16 39 H 0.20 1.24 8.06 -2.91 -0.02 1.21 16 40 H 0.41 7.95 7.89 -92.71 -0.73 7.22 16 41 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 42 H 0.09 2.35 8.14 -2.39 -0.02 2.33 16 43 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 44 H 0.07 2.76 7.96 -2.39 -0.02 2.75 16 45 H 0.25 14.20 8.31 -92.71 -0.77 13.43 16 46 H 0.00 -0.09 8.14 -2.39 -0.02 -0.11 16 47 H 0.07 3.50 6.17 -2.39 -0.01 3.48 16 48 H 0.11 3.31 8.14 -2.39 -0.02 3.29 16 49 H 0.05 1.76 8.14 -2.38 -0.02 1.74 16 Total: -1.00 -74.23 398.10 1.93 -72.31 By element: Atomic # 1 Polarization: 17.99 SS G_CDS: 0.21 Total: 18.20 kcal Atomic # 6 Polarization: 10.06 SS G_CDS: 7.86 Total: 17.92 kcal Atomic # 7 Polarization: -113.98 SS G_CDS: -6.58 Total: -120.56 kcal Atomic # 8 Polarization: -32.24 SS G_CDS: -1.59 Total: -33.82 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 2.03 Total: 45.96 kcal Total: -74.23 1.93 -72.31 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001495873974.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.020 kcal (2) G-P(sol) polarization free energy of solvation -74.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.306 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds