Wall clock time and date at job start Tue Mar 31 2020 20:09:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.46889 * 2 1 4 4 C 1.52998 * 109.47322 * 239.99613 * 2 1 3 5 5 C 1.52994 * 109.47095 * 65.00152 * 4 2 1 6 6 C 1.50699 * 109.47348 * 180.02562 * 5 4 2 7 7 C 1.38268 * 119.98425 * 269.73130 * 6 5 4 8 8 C 1.38226 * 120.04736 * 179.72640 * 7 6 5 9 9 C 1.38218 * 120.02854 * 0.54031 * 8 7 6 10 10 C 1.38442 * 119.97196 * 359.73210 * 9 8 7 11 11 F 1.35103 * 120.02541 * 180.02562 * 10 9 8 12 12 C 1.38173 * 119.98852 * 89.99769 * 6 5 4 13 13 C 1.50706 * 109.46708 * 119.99468 * 2 1 3 14 14 O 1.21283 * 119.99503 * 119.99964 * 13 2 1 15 15 N 1.34773 * 120.00081 * 299.72691 * 13 2 1 16 16 C 1.46492 * 120.00231 * 359.97438 * 15 13 2 17 17 C 1.46506 * 119.99968 * 180.02562 * 15 13 2 18 18 H 1.09005 * 109.46586 * 359.97438 * 17 15 13 19 19 C 1.52995 * 109.47298 * 119.99670 * 17 15 13 20 20 C 1.52997 * 109.46809 * 239.99992 * 17 15 13 21 21 N 1.46500 * 109.47423 * 54.99559 * 20 17 15 22 22 C 1.36938 * 119.99715 * 179.97438 * 21 20 17 23 23 H 1.07998 * 120.00188 * 0.02562 * 22 21 20 24 24 C 1.38814 * 119.99538 * 179.97438 * 22 21 20 25 25 N 1.31620 * 120.00399 * 0.02562 * 24 22 21 26 26 Si 1.86807 * 119.99814 * 179.97438 * 24 22 21 27 27 H 1.48499 * 109.46533 * 60.00712 * 26 24 22 28 28 H 1.48499 * 109.47002 * 179.97438 * 26 24 22 29 29 H 1.48498 * 109.47341 * 300.00638 * 26 24 22 30 30 H 1.09002 * 109.47539 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.47120 * 300.00634 * 1 2 3 32 32 H 1.09002 * 109.47051 * 59.99923 * 1 2 3 33 33 H 1.08995 * 109.47026 * 185.00753 * 4 2 1 34 34 H 1.09000 * 109.46751 * 305.00152 * 4 2 1 35 35 H 1.09003 * 109.47481 * 299.99917 * 5 4 2 36 36 H 1.09000 * 109.47321 * 60.00349 * 5 4 2 37 37 H 1.07995 * 119.97448 * 359.97274 * 7 6 5 38 38 H 1.07998 * 119.98889 * 180.27578 * 8 7 6 39 39 H 1.07997 * 120.01717 * 179.75353 * 9 8 7 40 40 H 1.08003 * 120.01290 * 359.97438 * 12 6 5 41 41 H 1.09001 * 109.47443 * 89.99785 * 16 15 13 42 42 H 1.08999 * 109.47479 * 210.00762 * 16 15 13 43 43 H 1.09006 * 109.47080 * 330.00171 * 16 15 13 44 44 H 1.09005 * 109.47165 * 300.00024 * 19 17 15 45 45 H 1.08999 * 109.47043 * 59.99771 * 19 17 15 46 46 H 1.09002 * 109.47065 * 179.97438 * 19 17 15 47 47 H 1.09001 * 109.46828 * 174.99819 * 20 17 15 48 48 H 1.09006 * 109.47092 * 294.99796 * 20 17 15 49 49 H 0.96993 * 119.99749 * 0.02562 * 21 20 17 50 50 H 0.96996 * 120.00241 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.6353 0.0688 -2.4952 6 6 2.1371 -0.6420 -3.7257 7 6 3.3886 -0.3450 -4.2332 8 6 3.8524 -1.0002 -5.3584 9 6 3.0612 -1.9451 -5.9841 10 6 1.8057 -2.2392 -5.4802 11 9 1.0316 -3.1629 -6.0906 12 6 1.3443 -1.5862 -4.3495 13 6 2.0322 -0.7103 1.2306 14 8 2.7295 -1.6965 1.1194 15 7 1.7111 -0.2466 2.4546 16 6 0.8744 0.9483 2.5889 17 6 2.1999 -0.9368 3.6509 18 1 2.8013 -1.7961 3.3542 19 6 3.0553 0.0232 4.4800 20 6 1.0101 -1.4119 4.4873 21 7 0.1274 -2.2354 3.6573 22 6 -1.0103 -2.7756 4.1948 23 1 -1.2571 -2.5942 5.2305 24 6 -1.8470 -3.5554 3.4082 25 7 -1.5465 -3.7761 2.1459 26 14 -3.3987 -4.2930 4.1416 27 1 -4.2804 -3.2034 4.6322 28 1 -4.1132 -5.0770 3.1023 29 1 -3.0365 -5.1840 5.2729 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5140 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 3.1263 -0.7996 -1.2054 34 1 1.6054 -1.7199 -1.2950 35 1 0.5490 0.1470 -2.5390 36 1 2.0700 1.0673 -2.4494 37 1 4.0056 0.3965 -3.7477 38 1 4.8319 -0.7707 -5.7514 39 1 3.4222 -2.4540 -6.8656 40 1 0.3653 -1.8152 -3.9552 41 1 -0.1748 0.6551 2.6248 42 1 1.1364 1.4741 3.5071 43 1 1.0390 1.6051 1.7346 44 1 3.9029 0.3617 3.8840 45 1 2.4535 0.8823 4.7765 46 1 3.4185 -0.4902 5.3703 47 1 1.3709 -2.0016 5.3300 48 1 0.4585 -0.5479 4.8580 49 1 0.3493 -2.3986 2.7273 50 1 -2.1309 -4.3213 1.5963 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001496233232.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:09:42 Heat of formation + Delta-G solvation = -54.674727 kcal Electronic energy + Delta-G solvation = -29485.451755 eV Core-core repulsion = 25427.114369 eV Total energy + Delta-G solvation = -4058.337386 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -48.97264 -40.02605 -39.27747 -36.58510 -35.39741 -34.00127 -32.67117 -31.36599 -30.67349 -29.99746 -28.17134 -26.74834 -25.64838 -25.06665 -23.21259 -22.83349 -22.34412 -21.18951 -19.93034 -18.59354 -17.48331 -17.03433 -16.76854 -16.51881 -16.30640 -15.81353 -15.67278 -15.13492 -14.71960 -14.64320 -14.15970 -13.96529 -13.71444 -13.53394 -13.28551 -13.23173 -12.95501 -12.83313 -12.56340 -12.33705 -12.23193 -12.14360 -11.95897 -11.95221 -11.75004 -11.56238 -11.37399 -11.21504 -11.07663 -10.81853 -10.75865 -10.62935 -10.52717 -10.37494 -10.04320 -9.66669 -9.23330 -9.06371 -8.83647 -8.78105 -8.16766 -6.86642 -5.70539 -2.99577 1.00946 1.05955 3.09550 3.35721 3.45189 3.47339 3.50188 3.51233 4.10006 4.49434 4.59449 4.61405 4.75588 4.85450 4.99040 5.06095 5.13321 5.18606 5.22869 5.34332 5.39860 5.42538 5.49134 5.55552 5.58226 5.62513 5.65478 5.75203 5.78334 5.89974 5.94896 5.97660 6.03218 6.05762 6.08751 6.14256 6.18019 6.21024 6.22429 6.40925 6.42013 6.47599 6.52210 6.65028 6.75786 6.77953 7.05937 7.72079 7.83279 8.47091 8.65397 9.58649 10.17789 10.53706 11.51314 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.010306 B = 0.003033 C = 0.002497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2716.343505 B = 9229.086225 C =11211.398476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.103 4.103 3 H 0.089 0.911 4 C -0.093 4.093 5 C -0.084 4.084 6 C -0.045 4.045 7 C -0.129 4.129 8 C -0.091 4.091 9 C -0.164 4.164 10 C 0.100 3.900 11 F -0.141 7.141 12 C -0.150 4.150 13 C 0.522 3.478 14 O -0.541 6.541 15 N -0.597 5.597 16 C 0.079 3.921 17 C 0.125 3.875 18 H 0.099 0.901 19 C -0.155 4.155 20 C 0.144 3.856 21 N -0.727 5.727 22 C -0.241 4.241 23 H 0.067 0.933 24 C -0.011 4.011 25 N -0.928 5.928 26 Si 0.905 3.095 27 H -0.287 1.287 28 H -0.291 1.291 29 H -0.287 1.287 30 H 0.074 0.926 31 H 0.071 0.929 32 H 0.060 0.940 33 H 0.070 0.930 34 H 0.076 0.924 35 H 0.080 0.920 36 H 0.075 0.925 37 H 0.128 0.872 38 H 0.130 0.870 39 H 0.132 0.868 40 H 0.137 0.863 41 H 0.067 0.933 42 H 0.065 0.935 43 H 0.066 0.934 44 H 0.054 0.946 45 H 0.057 0.943 46 H 0.066 0.934 47 H 0.026 0.974 48 H 0.019 0.981 49 H 0.387 0.613 50 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.271 14.107 -11.443 20.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.124 4.124 3 H 0.107 0.893 4 C -0.131 4.131 5 C -0.121 4.121 6 C -0.045 4.045 7 C -0.147 4.147 8 C -0.109 4.109 9 C -0.182 4.182 10 C 0.081 3.919 11 F -0.120 7.120 12 C -0.168 4.168 13 C 0.310 3.690 14 O -0.418 6.418 15 N -0.329 5.329 16 C -0.064 4.064 17 C 0.021 3.979 18 H 0.117 0.883 19 C -0.213 4.213 20 C 0.016 3.984 21 N -0.371 5.371 22 C -0.372 4.372 23 H 0.085 0.915 24 C -0.208 4.208 25 N -0.576 5.576 26 Si 0.736 3.264 27 H -0.214 1.214 28 H -0.217 1.217 29 H -0.214 1.214 30 H 0.093 0.907 31 H 0.090 0.910 32 H 0.079 0.921 33 H 0.089 0.911 34 H 0.094 0.906 35 H 0.099 0.901 36 H 0.094 0.906 37 H 0.146 0.854 38 H 0.148 0.852 39 H 0.150 0.850 40 H 0.155 0.845 41 H 0.086 0.914 42 H 0.084 0.916 43 H 0.084 0.916 44 H 0.073 0.927 45 H 0.076 0.924 46 H 0.085 0.915 47 H 0.043 0.957 48 H 0.037 0.963 49 H 0.221 0.779 50 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 10.472 13.491 -11.410 20.540 hybrid contribution -1.103 -0.721 0.060 1.319 sum 9.370 12.770 -11.350 19.486 Atomic orbital electron populations 1.22089 0.92354 1.04592 1.02572 1.21231 0.98227 0.99840 0.93144 0.89316 1.21364 1.01693 0.99496 0.90584 1.20761 1.01868 0.98361 0.91131 1.19786 0.93709 0.95211 0.95790 1.21134 0.95772 1.01022 0.96786 1.20978 0.99384 0.95181 0.95325 1.21114 0.93629 1.01179 1.02328 1.17732 0.90129 0.90338 0.93733 1.91505 1.74508 1.63691 1.82256 1.21136 1.01986 0.98169 0.95535 1.20517 0.79731 0.84374 0.84419 1.90678 1.38676 1.26139 1.86331 1.47630 1.51104 1.28633 1.05582 1.21870 0.95952 0.86886 1.01705 1.21361 0.96067 0.95502 0.84948 0.88323 1.22058 0.99502 0.99759 1.00018 1.20990 0.90161 0.94007 0.93284 1.42281 1.24438 1.59058 1.11358 1.19152 0.98505 1.24419 0.95136 0.91461 1.24720 0.99159 1.00969 0.95913 1.69669 1.38790 1.43297 1.05852 0.86315 0.83385 0.78920 0.77805 1.21409 1.21732 1.21375 0.90706 0.90977 0.92122 0.91133 0.90557 0.90126 0.90648 0.85378 0.85167 0.85034 0.84492 0.91409 0.91606 0.91587 0.92718 0.92419 0.91498 0.95665 0.96308 0.77891 0.93566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.18 8.59 37.16 0.32 -1.86 16 2 C -0.10 -1.37 1.92 -91.77 -0.18 -1.55 16 3 H 0.09 0.92 7.39 -51.93 -0.38 0.54 16 4 C -0.09 -1.23 4.01 -26.74 -0.11 -1.33 16 5 C -0.08 -0.84 5.10 -27.89 -0.14 -0.98 16 6 C -0.04 -0.48 5.13 -104.64 -0.54 -1.02 16 7 C -0.13 -1.22 9.70 -39.57 -0.38 -1.60 16 8 C -0.09 -0.80 10.04 -39.59 -0.40 -1.20 16 9 C -0.16 -1.64 10.03 -39.51 -0.40 -2.04 16 10 C 0.10 1.20 7.30 -39.42 -0.29 0.91 16 11 F -0.14 -1.84 17.27 2.25 0.04 -1.81 16 12 C -0.15 -1.78 9.68 -39.51 -0.38 -2.16 16 13 C 0.52 9.15 6.78 -10.98 -0.07 9.08 16 14 O -0.54 -11.66 15.25 5.56 0.08 -11.57 16 15 N -0.60 -9.69 2.24 -173.93 -0.39 -10.08 16 16 C 0.08 1.02 7.97 59.84 0.48 1.49 16 17 C 0.12 2.14 2.80 -67.93 -0.19 1.95 16 18 H 0.10 1.97 6.90 -51.93 -0.36 1.61 16 19 C -0.15 -1.98 9.17 37.16 0.34 -1.64 16 20 C 0.14 2.93 5.56 -4.04 -0.02 2.90 16 21 N -0.73 -18.74 5.43 -59.91 -0.33 -19.06 16 22 C -0.24 -6.80 9.99 -15.06 -0.15 -6.95 16 23 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 24 C -0.01 -0.33 5.50 -17.43 -0.10 -0.42 16 25 N -0.93 -28.35 13.06 55.49 0.72 -27.62 16 26 Si 0.90 22.63 29.55 -169.99 -5.02 17.60 16 27 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 28 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 29 H -0.29 -7.12 7.11 56.52 0.40 -6.71 16 30 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 31 H 0.07 0.98 4.56 -51.93 -0.24 0.74 16 32 H 0.06 0.66 6.57 -51.93 -0.34 0.32 16 33 H 0.07 0.97 7.95 -51.93 -0.41 0.55 16 34 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 35 H 0.08 0.78 6.51 -51.93 -0.34 0.44 16 36 H 0.07 0.61 8.08 -51.93 -0.42 0.19 16 37 H 0.13 0.96 8.06 -52.49 -0.42 0.53 16 38 H 0.13 0.80 8.06 -52.49 -0.42 0.38 16 39 H 0.13 1.06 8.06 -52.49 -0.42 0.64 16 40 H 0.14 1.58 8.06 -52.48 -0.42 1.16 16 41 H 0.07 1.02 6.95 -51.93 -0.36 0.66 16 42 H 0.07 0.73 6.42 -51.93 -0.33 0.40 16 43 H 0.07 0.66 6.01 -51.93 -0.31 0.35 16 44 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 45 H 0.06 0.66 6.66 -51.93 -0.35 0.31 16 46 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 47 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 48 H 0.02 0.37 7.84 -51.93 -0.41 -0.03 16 49 H 0.39 10.80 7.06 -40.82 -0.29 10.51 16 50 H 0.25 7.58 8.31 -40.82 -0.34 7.24 16 LS Contribution 401.39 15.07 6.05 6.05 Total: -1.00 -33.89 401.39 -8.94 -42.83 By element: Atomic # 1 Polarization: 17.97 SS G_CDS: -7.89 Total: 10.08 kcal Atomic # 6 Polarization: -4.21 SS G_CDS: -2.21 Total: -6.42 kcal Atomic # 7 Polarization: -56.77 SS G_CDS: 0.01 Total: -56.76 kcal Atomic # 8 Polarization: -11.66 SS G_CDS: 0.08 Total: -11.57 kcal Atomic # 9 Polarization: -1.84 SS G_CDS: 0.04 Total: -1.81 kcal Atomic # 14 Polarization: 22.63 SS G_CDS: -5.02 Total: 17.60 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -33.89 -8.94 -42.83 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001496233232.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.840 kcal (2) G-P(sol) polarization free energy of solvation -33.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.835 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds