Wall clock time and date at job start Tue Mar 31 2020 20:09:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.47368 * 2 1 4 4 C 1.53008 * 109.47082 * 240.00755 * 2 1 3 5 5 N 1.46499 * 109.46913 * 184.99827 * 4 2 1 6 6 C 1.36941 * 119.99718 * 179.97438 * 5 4 2 7 7 H 1.08003 * 120.00085 * 0.02562 * 6 5 4 8 8 C 1.38811 * 119.99981 * 180.02562 * 6 5 4 9 9 N 1.31619 * 120.00222 * 0.02562 * 8 6 5 10 10 Si 1.86796 * 119.99938 * 180.02562 * 8 6 5 11 11 H 1.48501 * 109.47333 * 359.97438 * 10 8 6 12 12 H 1.48507 * 109.47311 * 119.99998 * 10 8 6 13 13 H 1.48503 * 109.46955 * 239.99920 * 10 8 6 14 14 N 1.46502 * 109.47349 * 120.00625 * 2 1 3 15 15 C 1.46499 * 120.00062 * 60.00143 * 14 2 1 16 16 C 1.34779 * 119.99726 * 239.99897 * 14 2 1 17 17 O 1.21279 * 120.00410 * 359.97438 * 16 14 2 18 18 C 1.50703 * 119.99541 * 179.97438 * 16 14 2 19 19 H 1.08996 * 109.47057 * 299.99739 * 18 16 14 20 20 C 1.53003 * 109.46985 * 60.00319 * 18 16 14 21 21 C 1.53000 * 109.46653 * 179.97438 * 18 16 14 22 22 C 1.53007 * 109.46943 * 175.00042 * 21 18 16 23 23 C 1.50701 * 109.47281 * 180.02562 * 22 21 18 24 24 C 1.38262 * 119.98633 * 269.72789 * 23 22 21 25 25 C 1.38225 * 120.04841 * 179.72400 * 24 23 22 26 26 C 1.38214 * 120.02911 * 0.54648 * 25 24 23 27 27 C 1.38443 * 119.97177 * 359.72559 * 26 25 24 28 28 F 1.35099 * 120.02642 * 180.02562 * 27 26 25 29 29 C 1.38182 * 119.98510 * 89.99852 * 23 22 21 30 30 H 1.09000 * 109.47154 * 299.98961 * 1 2 3 31 31 H 1.08998 * 109.47159 * 59.99687 * 1 2 3 32 32 H 1.09003 * 109.46919 * 179.97438 * 1 2 3 33 33 H 1.09003 * 109.46861 * 304.99659 * 4 2 1 34 34 H 1.08987 * 109.47114 * 64.99842 * 4 2 1 35 35 H 0.96995 * 120.00517 * 0.02562 * 5 4 2 36 36 H 0.97001 * 120.00364 * 180.02562 * 9 8 6 37 37 H 1.09002 * 109.47391 * 89.99876 * 15 14 2 38 38 H 1.09001 * 109.46813 * 329.99933 * 15 14 2 39 39 H 1.09004 * 109.47041 * 210.00060 * 15 14 2 40 40 H 1.08991 * 109.46868 * 299.99138 * 20 18 16 41 41 H 1.08994 * 109.47151 * 60.00331 * 20 18 16 42 42 H 1.08998 * 109.46607 * 179.97438 * 20 18 16 43 43 H 1.08998 * 109.47611 * 295.00011 * 21 18 16 44 44 H 1.08998 * 109.47215 * 55.00576 * 21 18 16 45 45 H 1.09004 * 109.46772 * 299.99990 * 22 21 18 46 46 H 1.08998 * 109.46729 * 60.00236 * 22 21 18 47 47 H 1.08000 * 119.97660 * 359.97438 * 24 23 22 48 48 H 1.08005 * 119.98161 * 180.27352 * 25 24 23 49 49 H 1.07999 * 120.01523 * 179.74288 * 26 25 24 50 50 H 1.07997 * 120.01454 * 359.97438 * 29 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7211 -1.2494 5 7 3.5000 -0.8262 -1.1907 6 6 4.1837 -1.4385 -2.2070 7 1 3.6467 -1.8436 -3.0519 8 6 5.5671 -1.5386 -2.1512 9 7 6.2216 -1.0454 -1.1213 10 14 6.4998 -2.3733 -3.5378 11 1 5.5394 -2.8396 -4.5700 12 1 7.4509 -1.4083 -4.1459 13 1 7.2507 -3.5360 -2.9996 14 7 2.0183 -0.6907 1.1961 15 6 1.6645 -2.0933 1.4278 16 6 2.7932 -0.0358 2.0833 17 8 3.0866 1.1252 1.8912 18 6 3.2951 -0.7462 3.3139 19 1 2.4472 -1.0883 3.9071 20 6 4.1449 -1.9486 2.8978 21 6 4.1458 0.2152 4.1464 22 6 4.5519 -0.4656 5.4551 23 6 5.3893 0.4815 6.2753 24 6 6.7641 0.4917 6.1296 25 6 7.5329 1.3639 6.8772 26 6 6.9290 2.2190 7.7796 27 6 5.5528 2.2057 7.9304 28 9 4.9613 3.0414 8.8118 29 6 4.7831 1.3354 7.1769 30 1 -0.3633 0.5137 0.8901 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 1.6054 -1.7197 -1.2954 34 1 1.7516 -0.1581 -2.1369 35 1 3.9824 -0.4627 -0.4318 36 1 7.1884 -1.1150 -1.0825 37 1 2.4158 -2.7378 0.9713 38 1 0.6905 -2.3003 0.9844 39 1 1.6239 -2.2855 2.5000 40 1 3.5393 -2.6335 2.3046 41 1 4.9929 -1.6063 2.3047 42 1 4.5083 -2.4621 3.7879 43 1 5.0400 0.4877 3.5859 44 1 3.5682 1.1127 4.3679 45 1 3.6576 -0.7380 6.0156 46 1 5.1295 -1.3631 5.2336 47 1 7.2374 -0.1794 5.4282 48 1 8.6065 1.3740 6.7592 49 1 7.5302 2.8974 8.3666 50 1 3.7095 1.3245 7.2934 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001496233233.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:09:46 Heat of formation + Delta-G solvation = -54.879106 kcal Electronic energy + Delta-G solvation = -29446.544395 eV Core-core repulsion = 25388.198147 eV Total energy + Delta-G solvation = -4058.346249 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -49.03089 -40.02850 -39.27678 -36.58698 -35.39894 -34.01072 -32.68020 -31.37780 -30.65889 -30.00322 -28.17763 -26.75293 -25.65617 -25.07106 -23.18612 -22.85443 -22.36915 -21.19322 -19.93321 -18.59742 -17.48633 -17.04822 -16.83514 -16.48276 -16.30580 -15.81535 -15.72683 -15.11709 -14.70736 -14.62492 -14.34420 -13.86062 -13.71410 -13.55681 -13.27811 -13.23022 -13.01058 -12.80985 -12.56589 -12.36149 -12.24357 -12.12923 -11.96597 -11.92188 -11.75228 -11.57065 -11.39841 -11.15529 -11.12316 -10.85475 -10.76433 -10.62414 -10.54010 -10.36626 -10.00153 -9.68680 -9.23594 -9.07703 -8.85556 -8.77870 -8.16937 -6.87503 -5.72137 -3.00890 1.01258 1.05247 3.09295 3.35898 3.43359 3.47453 3.49438 3.51382 4.06860 4.48952 4.59808 4.61204 4.75411 4.84424 5.00234 5.05184 5.16079 5.19256 5.21454 5.34216 5.39818 5.42534 5.48598 5.55610 5.57728 5.61784 5.65342 5.75681 5.77456 5.91502 5.93387 5.95534 6.02697 6.05632 6.09779 6.15620 6.18375 6.21192 6.22094 6.40562 6.42224 6.47486 6.51813 6.64221 6.75413 6.77504 7.05728 7.71976 7.83108 8.45567 8.65311 9.57343 10.16579 10.52547 11.49884 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.011526 B = 0.002837 C = 0.002434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2428.716068 B = 9868.549206 C =11501.645207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.125 3.875 3 H 0.099 0.901 4 C 0.144 3.856 5 N -0.727 5.727 6 C -0.238 4.238 7 H 0.069 0.931 8 C -0.013 4.013 9 N -0.927 5.927 10 Si 0.904 3.096 11 H -0.282 1.282 12 H -0.292 1.292 13 H -0.292 1.292 14 N -0.597 5.597 15 C 0.079 3.921 16 C 0.521 3.479 17 O -0.541 6.541 18 C -0.103 4.103 19 H 0.089 0.911 20 C -0.159 4.159 21 C -0.093 4.093 22 C -0.084 4.084 23 C -0.045 4.045 24 C -0.125 4.125 25 C -0.088 4.088 26 C -0.163 4.163 27 C 0.096 3.904 28 F -0.143 7.143 29 C -0.153 4.153 30 H 0.054 0.946 31 H 0.066 0.934 32 H 0.057 0.943 33 H 0.019 0.981 34 H 0.026 0.974 35 H 0.387 0.613 36 H 0.253 0.747 37 H 0.068 0.932 38 H 0.065 0.935 39 H 0.066 0.934 40 H 0.072 0.928 41 H 0.074 0.926 42 H 0.060 0.940 43 H 0.077 0.923 44 H 0.069 0.931 45 H 0.073 0.927 46 H 0.082 0.918 47 H 0.132 0.868 48 H 0.132 0.868 49 H 0.132 0.868 50 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.196 -0.481 17.862 18.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.021 3.979 3 H 0.117 0.883 4 C 0.016 3.984 5 N -0.372 5.372 6 C -0.370 4.370 7 H 0.086 0.914 8 C -0.209 4.209 9 N -0.576 5.576 10 Si 0.735 3.265 11 H -0.207 1.207 12 H -0.219 1.219 13 H -0.220 1.220 14 N -0.330 5.330 15 C -0.064 4.064 16 C 0.309 3.691 17 O -0.418 6.418 18 C -0.125 4.125 19 H 0.107 0.893 20 C -0.216 4.216 21 C -0.131 4.131 22 C -0.121 4.121 23 C -0.045 4.045 24 C -0.143 4.143 25 C -0.106 4.106 26 C -0.182 4.182 27 C 0.077 3.923 28 F -0.122 7.122 29 C -0.171 4.171 30 H 0.073 0.927 31 H 0.085 0.915 32 H 0.076 0.924 33 H 0.037 0.963 34 H 0.044 0.956 35 H 0.221 0.779 36 H 0.063 0.937 37 H 0.086 0.914 38 H 0.084 0.916 39 H 0.084 0.916 40 H 0.090 0.910 41 H 0.093 0.907 42 H 0.079 0.921 43 H 0.095 0.905 44 H 0.088 0.912 45 H 0.092 0.908 46 H 0.101 0.899 47 H 0.150 0.850 48 H 0.150 0.850 49 H 0.150 0.850 50 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -6.038 0.083 17.627 18.632 hybrid contribution 0.646 -0.247 -0.461 0.831 sum -5.392 -0.164 17.166 17.993 Atomic orbital electron populations 1.22059 0.95395 1.01923 1.01978 1.21360 0.93085 0.98540 0.84892 0.88323 1.20991 0.87159 0.96662 0.93629 1.42300 0.99672 1.70066 1.25117 1.19247 0.89437 1.29182 0.99108 0.91352 1.24720 0.96407 1.01740 0.98004 1.69694 1.06964 1.50849 1.30091 0.86167 0.79970 0.78745 0.81587 1.20689 1.21941 1.21972 1.47634 1.50795 1.12077 1.22460 1.21875 1.01055 0.82590 1.00891 1.20520 0.77434 0.86731 0.84367 1.90678 1.57073 1.17317 1.76726 1.21233 0.99318 0.97295 0.94623 0.89337 1.22091 1.01194 0.96475 1.01830 1.21367 1.00626 0.97500 0.93643 1.20765 0.98996 0.97100 0.95255 1.19792 0.94034 0.95881 0.94816 1.21228 0.93293 0.99848 0.99919 1.21029 1.00350 0.94514 0.94739 1.21118 0.92883 1.02268 1.01915 1.17707 0.91369 0.91815 0.91398 1.91488 1.84399 1.69675 1.66630 1.21040 1.00550 0.97409 0.98132 0.92717 0.91497 0.92416 0.96292 0.95641 0.77885 0.93704 0.91396 0.91616 0.91579 0.90966 0.90694 0.92121 0.90477 0.91209 0.90827 0.89948 0.84994 0.84995 0.85032 0.84866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.99 9.17 37.16 0.34 -1.65 16 2 C 0.12 2.14 2.80 -67.93 -0.19 1.95 16 3 H 0.10 1.97 6.90 -51.93 -0.36 1.61 16 4 C 0.14 2.91 5.56 -4.04 -0.02 2.89 16 5 N -0.73 -18.62 5.43 -59.91 -0.33 -18.95 16 6 C -0.24 -6.68 9.99 -15.06 -0.15 -6.83 16 7 H 0.07 1.87 7.83 -52.48 -0.41 1.45 16 8 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 9 N -0.93 -28.05 13.06 55.49 0.72 -27.32 16 10 Si 0.90 22.43 29.55 -169.99 -5.02 17.41 16 11 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 12 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 13 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 14 N -0.60 -9.68 2.24 -173.93 -0.39 -10.07 16 15 C 0.08 1.02 7.96 59.85 0.48 1.49 16 16 C 0.52 9.15 6.78 -10.98 -0.07 9.08 16 17 O -0.54 -11.67 15.25 5.56 0.08 -11.58 16 18 C -0.10 -1.38 1.92 -91.77 -0.18 -1.55 16 19 H 0.09 0.93 7.40 -51.93 -0.38 0.55 16 20 C -0.16 -2.15 8.58 37.16 0.32 -1.83 16 21 C -0.09 -1.23 4.01 -26.73 -0.11 -1.33 16 22 C -0.08 -0.84 5.10 -27.88 -0.14 -0.98 16 23 C -0.05 -0.49 5.13 -104.63 -0.54 -1.02 16 24 C -0.12 -1.30 9.70 -39.58 -0.38 -1.69 16 25 C -0.09 -0.85 10.04 -39.60 -0.40 -1.24 16 26 C -0.16 -1.64 10.03 -39.51 -0.40 -2.03 16 27 C 0.10 1.09 7.30 -39.42 -0.29 0.80 16 28 F -0.14 -1.71 17.27 2.25 0.04 -1.67 16 29 C -0.15 -1.66 9.68 -39.51 -0.38 -2.05 16 30 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.06 0.66 6.66 -51.93 -0.35 0.32 16 33 H 0.02 0.37 7.84 -51.93 -0.41 -0.03 16 34 H 0.03 0.53 8.14 -51.94 -0.42 0.10 16 35 H 0.39 10.72 7.06 -40.82 -0.29 10.44 16 36 H 0.25 7.41 8.31 -40.82 -0.34 7.07 16 37 H 0.07 1.01 6.95 -51.93 -0.36 0.65 16 38 H 0.07 0.73 6.43 -51.93 -0.33 0.40 16 39 H 0.07 0.66 6.01 -51.93 -0.31 0.35 16 40 H 0.07 0.97 4.53 -51.93 -0.24 0.73 16 41 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 42 H 0.06 0.65 6.56 -51.93 -0.34 0.30 16 43 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 44 H 0.07 0.98 7.95 -51.93 -0.41 0.57 16 45 H 0.07 0.62 8.08 -51.93 -0.42 0.20 16 46 H 0.08 0.76 6.51 -51.93 -0.34 0.43 16 47 H 0.13 1.25 8.06 -52.49 -0.42 0.82 16 48 H 0.13 0.96 8.06 -52.48 -0.42 0.54 16 49 H 0.13 1.07 8.06 -52.49 -0.42 0.64 16 50 H 0.13 1.27 8.06 -52.49 -0.42 0.85 16 LS Contribution 401.36 15.07 6.05 6.05 Total: -1.00 -33.55 401.36 -8.94 -42.49 By element: Atomic # 1 Polarization: 17.99 SS G_CDS: -7.89 Total: 10.10 kcal Atomic # 6 Polarization: -4.24 SS G_CDS: -2.21 Total: -6.45 kcal Atomic # 7 Polarization: -56.35 SS G_CDS: 0.01 Total: -56.34 kcal Atomic # 8 Polarization: -11.67 SS G_CDS: 0.08 Total: -11.58 kcal Atomic # 9 Polarization: -1.71 SS G_CDS: 0.04 Total: -1.67 kcal Atomic # 14 Polarization: 22.43 SS G_CDS: -5.02 Total: 17.41 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -33.55 -8.94 -42.49 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001496233233.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.389 kcal (2) G-P(sol) polarization free energy of solvation -33.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.491 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds