Wall clock time and date at job start Tue Mar 31 2020 20:09:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.47368 * 2 1 4 4 C 1.53008 * 109.47082 * 240.00755 * 2 1 3 5 5 N 1.46499 * 109.46913 * 184.99827 * 4 2 1 6 6 C 1.36941 * 119.99718 * 179.97438 * 5 4 2 7 7 H 1.08003 * 120.00085 * 0.02562 * 6 5 4 8 8 C 1.38811 * 119.99981 * 180.02562 * 6 5 4 9 9 N 1.31619 * 120.00222 * 0.02562 * 8 6 5 10 10 Si 1.86796 * 119.99938 * 180.02562 * 8 6 5 11 11 H 1.48501 * 109.47333 * 359.97438 * 10 8 6 12 12 H 1.48507 * 109.47311 * 119.99998 * 10 8 6 13 13 H 1.48503 * 109.46955 * 239.99920 * 10 8 6 14 14 N 1.46502 * 109.47349 * 120.00625 * 2 1 3 15 15 C 1.46499 * 120.00062 * 60.00143 * 14 2 1 16 16 C 1.34779 * 119.99726 * 239.99897 * 14 2 1 17 17 O 1.21279 * 120.00410 * 359.97438 * 16 14 2 18 18 C 1.50703 * 119.99541 * 179.97438 * 16 14 2 19 19 H 1.08996 * 109.47057 * 299.99739 * 18 16 14 20 20 C 1.53003 * 109.46985 * 60.00319 * 18 16 14 21 21 C 1.53000 * 109.46653 * 179.97438 * 18 16 14 22 22 C 1.53007 * 109.46943 * 175.00042 * 21 18 16 23 23 C 1.50701 * 109.47281 * 180.02562 * 22 21 18 24 24 C 1.38262 * 119.98633 * 269.72789 * 23 22 21 25 25 C 1.38225 * 120.04841 * 179.72400 * 24 23 22 26 26 C 1.38214 * 120.02911 * 0.54648 * 25 24 23 27 27 C 1.38443 * 119.97177 * 359.72559 * 26 25 24 28 28 F 1.35099 * 120.02642 * 180.02562 * 27 26 25 29 29 C 1.38182 * 119.98510 * 89.99852 * 23 22 21 30 30 H 1.09000 * 109.47154 * 299.98961 * 1 2 3 31 31 H 1.08998 * 109.47159 * 59.99687 * 1 2 3 32 32 H 1.09003 * 109.46919 * 179.97438 * 1 2 3 33 33 H 1.09003 * 109.46861 * 304.99659 * 4 2 1 34 34 H 1.08987 * 109.47114 * 64.99842 * 4 2 1 35 35 H 0.96995 * 120.00517 * 0.02562 * 5 4 2 36 36 H 0.97001 * 120.00364 * 180.02562 * 9 8 6 37 37 H 1.09002 * 109.47391 * 89.99876 * 15 14 2 38 38 H 1.09001 * 109.46813 * 329.99933 * 15 14 2 39 39 H 1.09004 * 109.47041 * 210.00060 * 15 14 2 40 40 H 1.08991 * 109.46868 * 299.99138 * 20 18 16 41 41 H 1.08994 * 109.47151 * 60.00331 * 20 18 16 42 42 H 1.08998 * 109.46607 * 179.97438 * 20 18 16 43 43 H 1.08998 * 109.47611 * 295.00011 * 21 18 16 44 44 H 1.08998 * 109.47215 * 55.00576 * 21 18 16 45 45 H 1.09004 * 109.46772 * 299.99990 * 22 21 18 46 46 H 1.08998 * 109.46729 * 60.00236 * 22 21 18 47 47 H 1.08000 * 119.97660 * 359.97438 * 24 23 22 48 48 H 1.08005 * 119.98161 * 180.27352 * 25 24 23 49 49 H 1.07999 * 120.01523 * 179.74288 * 26 25 24 50 50 H 1.07997 * 120.01454 * 359.97438 * 29 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7211 -1.2494 5 7 3.5000 -0.8262 -1.1907 6 6 4.1837 -1.4385 -2.2070 7 1 3.6467 -1.8436 -3.0519 8 6 5.5671 -1.5386 -2.1512 9 7 6.2216 -1.0454 -1.1213 10 14 6.4998 -2.3733 -3.5378 11 1 5.5394 -2.8396 -4.5700 12 1 7.4509 -1.4083 -4.1459 13 1 7.2507 -3.5360 -2.9996 14 7 2.0183 -0.6907 1.1961 15 6 1.6645 -2.0933 1.4278 16 6 2.7932 -0.0358 2.0833 17 8 3.0866 1.1252 1.8912 18 6 3.2951 -0.7462 3.3139 19 1 2.4472 -1.0883 3.9071 20 6 4.1449 -1.9486 2.8978 21 6 4.1458 0.2152 4.1464 22 6 4.5519 -0.4656 5.4551 23 6 5.3893 0.4815 6.2753 24 6 6.7641 0.4917 6.1296 25 6 7.5329 1.3639 6.8772 26 6 6.9290 2.2190 7.7796 27 6 5.5528 2.2057 7.9304 28 9 4.9613 3.0414 8.8118 29 6 4.7831 1.3354 7.1769 30 1 -0.3633 0.5137 0.8901 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 1.6054 -1.7197 -1.2954 34 1 1.7516 -0.1581 -2.1369 35 1 3.9824 -0.4627 -0.4318 36 1 7.1884 -1.1150 -1.0825 37 1 2.4158 -2.7378 0.9713 38 1 0.6905 -2.3003 0.9844 39 1 1.6239 -2.2855 2.5000 40 1 3.5393 -2.6335 2.3046 41 1 4.9929 -1.6063 2.3047 42 1 4.5083 -2.4621 3.7879 43 1 5.0400 0.4877 3.5859 44 1 3.5682 1.1127 4.3679 45 1 3.6576 -0.7380 6.0156 46 1 5.1295 -1.3631 5.2336 47 1 7.2374 -0.1794 5.4282 48 1 8.6065 1.3740 6.7592 49 1 7.5302 2.8974 8.3666 50 1 3.7095 1.3245 7.2934 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001496233233.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:09:45 Heat of formation + Delta-G solvation = -73.822226 kcal Electronic energy + Delta-G solvation = -29447.365831 eV Core-core repulsion = 25388.198147 eV Total energy + Delta-G solvation = -4059.167684 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -49.90716 -41.30943 -40.12062 -37.99487 -36.57164 -35.81887 -33.93018 -32.80733 -31.66556 -31.41219 -29.14284 -27.89453 -27.38046 -26.15266 -24.63501 -23.93176 -23.65102 -22.17839 -21.15799 -19.93138 -19.07483 -18.41916 -18.01674 -17.37562 -17.16947 -17.06779 -16.62354 -16.60011 -16.35448 -15.79251 -15.44924 -15.26240 -15.14102 -14.79113 -14.50187 -14.35798 -14.10096 -13.83003 -13.74923 -13.67292 -13.64224 -13.32439 -13.19116 -12.96184 -12.85622 -12.80360 -12.67779 -12.51856 -12.43741 -12.24096 -12.08987 -12.03122 -11.78919 -11.73399 -11.56010 -11.54140 -10.98237 -10.54894 -9.89434 -9.61388 -9.49856 -8.97835 -7.91589 -5.21397 0.18941 0.26239 1.45634 1.47167 1.56790 1.74675 2.16860 2.55927 2.62700 3.25364 3.40767 3.57498 3.65544 3.84177 3.88666 3.99837 4.04621 4.11943 4.19018 4.29511 4.31942 4.32832 4.38096 4.48008 4.52069 4.55124 4.56152 4.73153 4.78061 4.80601 4.86466 4.90863 4.94715 4.98136 5.01670 5.05488 5.11573 5.13698 5.17754 5.19650 5.33233 5.38957 5.42134 5.47474 5.49287 5.62850 5.73767 5.96635 6.27830 6.55460 7.31765 7.35008 8.11003 8.34875 9.31095 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.011526 B = 0.002837 C = 0.002434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2428.716068 B = 9868.549206 C =11501.645207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.127 3.873 3 H 0.061 0.939 4 C 0.142 3.858 5 N -0.740 5.740 6 C -0.243 4.243 7 H 0.076 0.924 8 C -0.074 4.074 9 N -0.964 5.964 10 Si 0.972 3.028 11 H -0.266 1.266 12 H -0.298 1.298 13 H -0.291 1.291 14 N -0.597 5.597 15 C 0.074 3.926 16 C 0.506 3.494 17 O -0.595 6.595 18 C -0.094 4.094 19 H 0.132 0.868 20 C -0.150 4.150 21 C -0.086 4.086 22 C -0.073 4.073 23 C -0.057 4.057 24 C -0.137 4.137 25 C -0.091 4.091 26 C -0.166 4.166 27 C 0.076 3.924 28 F -0.150 7.150 29 C -0.159 4.159 30 H 0.063 0.937 31 H 0.076 0.924 32 H 0.080 0.920 33 H 0.037 0.963 34 H 0.025 0.975 35 H 0.372 0.628 36 H 0.248 0.752 37 H 0.045 0.955 38 H 0.089 0.911 39 H 0.101 0.899 40 H 0.075 0.925 41 H 0.024 0.976 42 H 0.096 0.904 43 H 0.038 0.962 44 H 0.056 0.944 45 H 0.100 0.900 46 H 0.093 0.907 47 H 0.138 0.862 48 H 0.155 0.845 49 H 0.150 0.850 50 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.734 -2.506 18.587 20.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.023 3.977 3 H 0.080 0.920 4 C 0.015 3.985 5 N -0.383 5.383 6 C -0.375 4.375 7 H 0.094 0.906 8 C -0.266 4.266 9 N -0.615 5.615 10 Si 0.801 3.199 11 H -0.190 1.190 12 H -0.226 1.226 13 H -0.218 1.218 14 N -0.328 5.328 15 C -0.067 4.067 16 C 0.296 3.704 17 O -0.476 6.476 18 C -0.114 4.114 19 H 0.150 0.850 20 C -0.207 4.207 21 C -0.124 4.124 22 C -0.110 4.110 23 C -0.057 4.057 24 C -0.155 4.155 25 C -0.109 4.109 26 C -0.184 4.184 27 C 0.057 3.943 28 F -0.129 7.129 29 C -0.178 4.178 30 H 0.082 0.918 31 H 0.095 0.905 32 H 0.098 0.902 33 H 0.055 0.945 34 H 0.043 0.957 35 H 0.204 0.796 36 H 0.057 0.943 37 H 0.064 0.936 38 H 0.108 0.892 39 H 0.119 0.881 40 H 0.094 0.906 41 H 0.043 0.957 42 H 0.115 0.885 43 H 0.057 0.943 44 H 0.075 0.925 45 H 0.118 0.882 46 H 0.111 0.889 47 H 0.156 0.844 48 H 0.173 0.827 49 H 0.167 0.833 50 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -7.640 -1.985 18.331 19.958 hybrid contribution 1.096 0.423 -0.732 1.384 sum -6.544 -1.562 17.599 18.841 Atomic orbital electron populations 1.21959 0.91358 1.03680 1.02986 1.21232 0.96003 0.96218 0.84237 0.92030 1.21191 0.84290 0.97762 0.95246 1.42506 1.01912 1.69765 1.24122 1.19646 0.89952 1.28318 0.99540 0.90628 1.25547 0.97455 1.03121 1.00490 1.69876 1.06759 1.52695 1.32173 0.85096 0.78478 0.77353 0.78929 1.19016 1.22608 1.21787 1.47787 1.50120 1.13376 1.21550 1.22105 1.01394 0.79869 1.03377 1.21404 0.76836 0.86429 0.85707 1.90646 1.58926 1.19840 1.78149 1.21277 1.00517 0.96578 0.93076 0.84988 1.22021 0.99424 0.96558 1.02675 1.21240 0.98761 0.97507 0.94864 1.20709 1.00146 0.96753 0.93417 1.19931 0.94368 0.96317 0.95097 1.21481 0.93597 1.00264 1.00147 1.21328 1.01570 0.93869 0.94112 1.21390 0.92666 1.02409 1.01949 1.17968 0.92114 0.92328 0.91913 1.91465 1.84583 1.69946 1.66918 1.21216 1.01228 0.97290 0.98063 0.91818 0.90472 0.90162 0.94528 0.95744 0.79615 0.94283 0.93611 0.89203 0.88054 0.90619 0.95699 0.88540 0.94290 0.92531 0.88189 0.88894 0.84445 0.82718 0.83269 0.83798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.31 9.17 71.98 0.66 -2.65 16 2 C 0.13 4.35 2.80 44.99 0.13 4.48 16 3 H 0.06 2.57 6.90 -2.39 -0.02 2.56 16 4 C 0.14 5.72 5.56 86.38 0.48 6.20 16 5 N -0.74 -38.75 5.43 -343.45 -1.87 -40.62 16 6 C -0.24 -13.71 9.99 84.03 0.84 -12.88 16 7 H 0.08 4.08 7.83 -2.91 -0.02 4.05 16 8 C -0.07 -4.29 5.50 84.86 0.47 -3.82 16 9 N -0.96 -60.27 13.06 21.65 0.28 -59.98 16 10 Si 0.97 46.61 29.55 68.60 2.03 48.63 16 11 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 12 H -0.30 -14.52 7.11 99.48 0.71 -13.81 16 13 H -0.29 -13.76 7.11 99.48 0.71 -13.05 16 14 N -0.60 -19.03 2.24 -822.57 -1.85 -20.87 16 15 C 0.07 1.72 7.96 127.77 1.02 2.74 16 16 C 0.51 18.10 6.78 87.66 0.59 18.69 16 17 O -0.59 -27.20 15.25 -3.02 -0.05 -27.25 16 18 C -0.09 -2.40 1.92 -11.54 -0.02 -2.42 16 19 H 0.13 2.27 7.40 -2.39 -0.02 2.25 16 20 C -0.15 -3.93 8.58 71.98 0.62 -3.32 16 21 C -0.09 -2.27 4.01 30.60 0.12 -2.15 16 22 C -0.07 -1.35 5.10 29.85 0.15 -1.19 16 23 C -0.06 -1.19 5.13 -19.87 -0.10 -1.29 16 24 C -0.14 -2.80 9.70 22.27 0.22 -2.59 16 25 C -0.09 -1.67 10.04 22.26 0.22 -1.44 16 26 C -0.17 -3.20 10.03 22.31 0.22 -2.98 16 27 C 0.08 1.69 7.30 22.38 0.16 1.86 16 28 F -0.15 -3.56 17.27 44.97 0.78 -2.78 16 29 C -0.16 -3.38 9.68 22.31 0.22 -3.17 16 30 H 0.06 1.40 8.14 -2.39 -0.02 1.39 16 31 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 32 H 0.08 1.53 6.66 -2.39 -0.02 1.51 16 33 H 0.04 1.36 7.84 -2.39 -0.02 1.34 16 34 H 0.02 1.00 8.14 -2.39 -0.02 0.98 16 35 H 0.37 21.55 7.06 -92.71 -0.65 20.89 16 36 H 0.25 15.05 8.31 -92.71 -0.77 14.28 16 37 H 0.05 1.29 6.95 -2.39 -0.02 1.28 16 38 H 0.09 1.65 6.43 -2.39 -0.02 1.64 16 39 H 0.10 1.62 6.01 -2.38 -0.01 1.61 16 40 H 0.08 1.93 4.53 -2.39 -0.01 1.92 16 41 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 42 H 0.10 1.81 6.56 -2.39 -0.02 1.80 16 43 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 44 H 0.06 1.63 7.95 -2.39 -0.02 1.61 16 45 H 0.10 1.34 8.08 -2.38 -0.02 1.32 16 46 H 0.09 1.52 6.51 -2.39 -0.02 1.50 16 47 H 0.14 2.58 8.06 -2.91 -0.02 2.55 16 48 H 0.16 2.02 8.06 -2.91 -0.02 2.00 16 49 H 0.15 2.24 8.06 -2.91 -0.02 2.22 16 50 H 0.14 2.61 8.06 -2.91 -0.02 2.59 16 Total: -1.00 -77.40 401.36 5.61 -71.79 By element: Atomic # 1 Polarization: 36.73 SS G_CDS: 0.29 Total: 37.01 kcal Atomic # 6 Polarization: -11.93 SS G_CDS: 6.00 Total: -5.93 kcal Atomic # 7 Polarization: -118.05 SS G_CDS: -3.43 Total: -121.48 kcal Atomic # 8 Polarization: -27.20 SS G_CDS: -0.05 Total: -27.25 kcal Atomic # 9 Polarization: -3.56 SS G_CDS: 0.78 Total: -2.78 kcal Atomic # 14 Polarization: 46.61 SS G_CDS: 2.03 Total: 48.63 kcal Total: -77.40 5.61 -71.79 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001496233233.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.029 kcal (2) G-P(sol) polarization free energy of solvation -77.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.794 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds