Wall clock time and date at job start Tue Mar 31 2020 19:13:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 109.49546 * 2 1 4 4 C 1.53187 * 109.49799 * 120.10119 * 2 1 3 5 5 N 1.46931 * 108.77309 * 174.58667 * 4 2 1 6 6 C 1.34772 * 120.62926 * 126.41675 * 5 4 2 7 7 O 1.21280 * 120.00243 * 359.97438 * 6 5 4 8 8 C 1.50699 * 119.99949 * 180.02562 * 6 5 4 9 9 O 1.42898 * 109.47189 * 179.97438 * 8 6 5 10 10 C 1.42901 * 114.00277 * 179.97438 * 9 8 6 11 11 C 1.50696 * 109.47632 * 179.97438 * 10 9 8 12 12 N 1.30499 * 125.65293 * 269.69612 * 11 10 9 13 13 C 1.34124 * 109.26116 * 179.89183 * 12 11 10 14 14 C 1.34672 * 108.01738 * 0.36760 * 13 12 11 15 15 N 1.35047 * 125.65201 * 89.99760 * 11 10 9 16 16 C 1.46504 * 126.39132 * 359.97438 * 15 11 10 17 17 C 1.46923 * 118.73730 * 306.38501 * 5 4 2 18 18 C 1.53195 * 108.77575 * 53.61542 * 17 5 4 19 19 C 1.53043 * 109.49393 * 239.93668 * 2 1 3 20 20 H 1.08998 * 109.46060 * 58.66545 * 19 2 1 21 21 N 1.46496 * 109.44915 * 298.69525 * 19 2 1 22 22 C 1.36949 * 119.99616 * 154.94210 * 21 19 2 23 23 H 1.07999 * 119.99880 * 359.97438 * 22 21 19 24 24 C 1.38805 * 119.99695 * 179.97438 * 22 21 19 25 25 N 1.31624 * 120.00137 * 359.97438 * 24 22 21 26 26 Si 1.86797 * 120.00095 * 179.97438 * 24 22 21 27 27 H 1.48499 * 109.47290 * 59.99657 * 26 24 22 28 28 H 1.48498 * 109.47538 * 180.02562 * 26 24 22 29 29 H 1.48509 * 109.46927 * 299.99991 * 26 24 22 30 30 H 1.09000 * 109.46682 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.46678 * 300.05876 * 1 2 3 32 32 H 1.08991 * 109.47219 * 60.06166 * 1 2 3 33 33 H 1.09001 * 109.58881 * 294.37192 * 4 2 1 34 34 H 1.08996 * 109.58907 * 54.66000 * 4 2 1 35 35 H 1.09002 * 109.47044 * 299.99355 * 8 6 5 36 36 H 1.09001 * 109.47565 * 59.99202 * 8 6 5 37 37 H 1.08998 * 109.47274 * 300.00178 * 10 9 8 38 38 H 1.09008 * 109.47119 * 59.99649 * 10 9 8 39 39 H 1.07994 * 125.99587 * 180.11053 * 13 12 11 40 40 H 1.08003 * 126.59228 * 179.81778 * 14 13 12 41 41 H 1.08992 * 109.47569 * 90.00417 * 16 15 11 42 42 H 1.09006 * 109.46723 * 209.99784 * 16 15 11 43 43 H 1.08999 * 109.47207 * 329.99403 * 16 15 11 44 44 H 1.08996 * 109.59375 * 293.82604 * 17 5 4 45 45 H 1.09006 * 109.58686 * 173.39604 * 17 5 4 46 46 H 1.08990 * 109.49959 * 185.41234 * 18 17 5 47 47 H 1.08999 * 109.49609 * 65.30943 * 18 17 5 48 48 H 0.96998 * 120.00391 * 334.93653 * 21 19 2 49 49 H 0.97007 * 119.99805 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0413 -0.7242 1.2493 5 7 3.5047 -0.8295 1.1692 6 6 4.2812 -0.3872 2.1780 7 8 3.7732 0.1038 3.1638 8 6 5.7806 -0.5016 2.0807 9 8 6.3770 0.0324 3.2644 10 6 7.8047 -0.0285 3.2744 11 6 8.3236 0.5588 4.5615 12 7 8.6349 1.8112 4.7551 13 6 9.0582 1.9719 6.0176 14 6 9.0150 0.7719 6.6273 15 7 8.5491 -0.1249 5.7041 16 6 8.3352 -1.5587 5.9158 17 6 4.1053 -1.4267 -0.0313 18 6 3.5709 -0.6946 -1.2664 19 6 2.0408 -0.7227 -1.2486 20 1 1.6581 -0.2238 -2.1390 21 7 1.5783 -2.1127 -1.2311 22 6 1.4468 -2.8053 -2.4052 23 1 1.6836 -2.3267 -3.3439 24 6 1.0091 -4.1224 -2.3886 25 7 0.7210 -4.7059 -1.2445 26 14 0.8290 -5.0671 -3.9900 27 1 2.1446 -5.1348 -4.6755 28 1 0.3489 -6.4425 -3.7022 29 1 -0.1503 -4.3746 -4.8657 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3632 0.5148 0.8895 32 1 -0.3633 0.5128 -0.8905 33 1 1.7638 -0.1587 2.1388 34 1 1.6034 -1.7211 1.2987 35 1 6.0589 -1.5502 1.9746 36 1 6.1322 0.0571 1.2133 37 1 8.1246 -1.0674 3.1936 38 1 8.1985 0.5394 2.4314 39 1 9.3813 2.8999 6.4654 40 1 9.2938 0.5582 7.6486 41 1 9.2457 -2.1028 5.6654 42 1 8.0807 -1.7377 6.9605 43 1 7.5198 -1.9022 5.2792 44 1 3.8376 -2.4818 -0.0877 45 1 5.1896 -1.3246 0.0131 46 1 3.9333 -1.1890 -2.1675 47 1 3.9159 0.3392 -1.2541 48 1 1.3653 -2.5424 -0.3880 49 1 0.4147 -5.6263 -1.2330 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001496354723.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:13:07 Heat of formation + Delta-G solvation = 4.164635 kcal Electronic energy + Delta-G solvation = -29429.965713 eV Core-core repulsion = 25394.099755 eV Total energy + Delta-G solvation = -4035.865958 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.32057 -40.11004 -38.26671 -37.18613 -34.30979 -34.28629 -32.91185 -31.45863 -31.21009 -29.22600 -28.65075 -27.42579 -26.28544 -25.58075 -24.51369 -23.49385 -21.67930 -21.65746 -20.34233 -19.74180 -18.25359 -17.68573 -17.38219 -17.13543 -16.51202 -16.42837 -15.86073 -15.31281 -15.08092 -14.70286 -14.62237 -14.25843 -14.10308 -13.97827 -13.68930 -13.31690 -13.23370 -13.19507 -13.07900 -12.91909 -12.55910 -12.28592 -12.23247 -11.94890 -11.53725 -11.39666 -11.21827 -10.92642 -10.82531 -10.50704 -10.49251 -10.25200 -10.22035 -10.02110 -9.87063 -9.86846 -9.58199 -9.51202 -8.96315 -8.71510 -8.25995 -7.01651 -5.82705 -3.11304 1.61942 2.44521 2.67902 2.77191 3.09208 3.38802 3.44384 3.44987 3.77959 4.29162 4.36406 4.47079 4.53999 4.66922 4.75079 4.79675 4.93262 4.98523 5.06885 5.09139 5.16403 5.19665 5.29664 5.35530 5.47918 5.48645 5.54657 5.69515 5.78548 5.90684 5.97761 6.04387 6.06609 6.21809 6.28613 6.37588 6.48627 6.49500 6.55305 6.65701 6.71029 6.76627 6.86208 6.91032 6.99677 7.64611 7.65783 7.84837 8.35894 8.36951 9.47445 10.04105 10.39242 11.39552 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.019461 B = 0.002265 C = 0.002159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1438.461152 B =12357.814115 C =12963.002396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.108 4.108 3 H 0.066 0.934 4 C 0.121 3.879 5 N -0.600 5.600 6 C 0.514 3.486 7 O -0.532 6.532 8 C 0.046 3.954 9 O -0.357 6.357 10 C 0.147 3.853 11 C 0.206 3.794 12 N -0.471 5.471 13 C -0.029 4.029 14 C -0.052 4.052 15 N -0.450 5.450 16 C 0.068 3.932 17 C 0.112 3.888 18 C -0.150 4.150 19 C 0.178 3.822 20 H 0.052 0.948 21 N -0.719 5.719 22 C -0.238 4.238 23 H 0.069 0.931 24 C -0.012 4.012 25 N -0.933 5.933 26 Si 0.905 3.095 27 H -0.287 1.287 28 H -0.292 1.292 29 H -0.287 1.287 30 H 0.071 0.929 31 H 0.044 0.956 32 H 0.053 0.947 33 H 0.084 0.916 34 H 0.076 0.924 35 H 0.081 0.919 36 H 0.084 0.916 37 H 0.067 0.933 38 H 0.086 0.914 39 H 0.172 0.828 40 H 0.177 0.823 41 H 0.078 0.922 42 H 0.088 0.912 43 H 0.091 0.909 44 H 0.087 0.913 45 H 0.067 0.933 46 H 0.075 0.925 47 H 0.050 0.950 48 H 0.384 0.616 49 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.176 7.086 11.290 20.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.129 4.129 3 H 0.084 0.916 4 C -0.001 4.001 5 N -0.334 5.334 6 C 0.301 3.699 7 O -0.408 6.408 8 C -0.033 4.033 9 O -0.274 6.274 10 C 0.069 3.931 11 C -0.056 4.056 12 N -0.191 5.191 13 C -0.178 4.178 14 C -0.185 4.185 15 N -0.133 5.133 16 C -0.075 4.075 17 C -0.010 4.010 18 C -0.192 4.192 19 C 0.068 3.932 20 H 0.070 0.930 21 N -0.361 5.361 22 C -0.369 4.369 23 H 0.087 0.913 24 C -0.208 4.208 25 N -0.581 5.581 26 Si 0.736 3.264 27 H -0.214 1.214 28 H -0.218 1.218 29 H -0.214 1.214 30 H 0.090 0.910 31 H 0.063 0.937 32 H 0.072 0.928 33 H 0.102 0.898 34 H 0.094 0.906 35 H 0.099 0.901 36 H 0.102 0.898 37 H 0.085 0.915 38 H 0.104 0.896 39 H 0.189 0.811 40 H 0.194 0.806 41 H 0.097 0.903 42 H 0.107 0.893 43 H 0.110 0.890 44 H 0.106 0.894 45 H 0.085 0.915 46 H 0.094 0.906 47 H 0.068 0.932 48 H 0.219 0.781 49 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 15.676 7.779 11.227 20.792 hybrid contribution 0.139 -1.595 -0.221 1.617 sum 15.815 6.184 11.005 20.236 Atomic orbital electron populations 1.21666 0.94188 1.03182 1.00487 1.21709 0.96547 0.98901 0.95695 0.91556 1.21645 0.78119 1.01617 0.98696 1.48056 1.07202 1.60172 1.17979 1.20019 0.88146 0.78613 0.83152 1.90702 1.75028 1.44172 1.30925 1.22303 0.92398 0.99718 0.88928 1.88087 1.17567 1.83077 1.38709 1.20505 0.81895 0.99114 0.91585 1.22617 1.05322 0.88209 0.89474 1.70215 1.16150 1.14756 1.18018 1.22342 1.06527 0.97807 0.91077 1.22767 1.08839 0.90312 0.96622 1.45286 1.47968 1.09404 1.10642 1.22127 1.03352 0.77457 1.04537 1.21775 0.96035 0.99296 0.83930 1.22531 1.00604 0.98685 0.97345 1.20219 0.90734 0.87367 0.94922 0.93043 1.42479 1.79006 1.07705 1.06919 1.19176 1.37339 0.93837 0.86559 0.91289 1.24705 1.02263 0.97207 0.96596 1.69642 1.51653 1.13107 1.23697 0.86311 0.77751 0.79206 0.83129 1.21378 1.21825 1.21363 0.91040 0.93734 0.92783 0.89778 0.90553 0.90073 0.89839 0.91505 0.89628 0.81057 0.80627 0.90306 0.89290 0.88984 0.89434 0.91485 0.90632 0.93178 0.78090 0.93472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.20 9.05 37.16 0.34 -1.86 16 2 C -0.11 -1.76 2.67 -90.50 -0.24 -2.00 16 3 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 4 C 0.12 2.04 5.42 -3.71 -0.02 2.02 16 5 N -0.60 -9.47 2.97 -172.77 -0.51 -9.98 16 6 C 0.51 8.35 7.77 -10.99 -0.09 8.27 16 7 O -0.53 -10.78 15.91 -14.35 -0.23 -11.01 16 8 C 0.05 0.56 4.76 36.01 0.17 0.73 16 9 O -0.36 -4.97 9.86 -55.14 -0.54 -5.51 16 10 C 0.15 1.53 6.02 36.00 0.22 1.75 16 11 C 0.21 2.53 7.53 -155.41 -1.17 1.36 16 12 N -0.47 -6.61 11.25 -10.82 -0.12 -6.74 16 13 C -0.03 -0.32 11.87 -17.81 -0.21 -0.53 16 14 C -0.05 -0.47 11.58 -16.56 -0.19 -0.66 16 15 N -0.45 -4.44 3.15 -121.28 -0.38 -4.82 16 16 C 0.07 0.41 10.79 59.85 0.65 1.05 16 17 C 0.11 1.64 6.08 -3.71 -0.02 1.62 16 18 C -0.15 -2.34 5.78 -26.61 -0.15 -2.49 16 19 C 0.18 3.21 2.53 -67.89 -0.17 3.04 16 20 H 0.05 0.97 8.08 -51.93 -0.42 0.55 16 21 N -0.72 -16.01 3.64 -53.38 -0.19 -16.21 16 22 C -0.24 -6.04 9.93 -15.06 -0.15 -6.19 16 23 H 0.07 1.71 7.83 -52.49 -0.41 1.30 16 24 C -0.01 -0.31 5.50 -17.43 -0.10 -0.41 16 25 N -0.93 -26.54 13.06 55.49 0.72 -25.81 16 26 Si 0.90 21.35 29.55 -169.99 -5.02 16.32 16 27 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 28 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 29 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 30 H 0.07 1.32 7.54 -51.93 -0.39 0.93 16 31 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.08 1.46 7.01 -51.93 -0.36 1.09 16 34 H 0.08 1.41 6.64 -51.93 -0.34 1.06 16 35 H 0.08 0.77 7.94 -51.93 -0.41 0.35 16 36 H 0.08 0.82 7.69 -51.93 -0.40 0.42 16 37 H 0.07 0.48 7.71 -51.93 -0.40 0.08 16 38 H 0.09 0.79 8.14 -51.92 -0.42 0.36 16 39 H 0.17 1.41 8.06 -52.49 -0.42 0.99 16 40 H 0.18 0.93 8.06 -52.48 -0.42 0.51 16 41 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 42 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 43 H 0.09 0.59 7.66 -51.93 -0.40 0.19 16 44 H 0.09 1.52 7.74 -51.93 -0.40 1.12 16 45 H 0.07 0.75 5.93 -51.93 -0.31 0.44 16 46 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 47 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 48 H 0.38 9.21 5.93 -40.82 -0.24 8.97 16 49 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 LS Contribution 395.26 15.07 5.96 5.96 Total: -1.00 -34.69 395.26 -9.33 -44.02 By element: Atomic # 1 Polarization: 15.96 SS G_CDS: -7.85 Total: 8.10 kcal Atomic # 6 Polarization: 6.83 SS G_CDS: -1.14 Total: 5.69 kcal Atomic # 7 Polarization: -63.08 SS G_CDS: -0.49 Total: -63.56 kcal Atomic # 8 Polarization: -15.75 SS G_CDS: -0.77 Total: -16.52 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -34.69 -9.33 -44.02 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001496354723.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.185 kcal (2) G-P(sol) polarization free energy of solvation -34.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.020 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds