Wall clock time and date at job start Tue Mar 31 2020 19:13:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 109.49546 * 2 1 4 4 C 1.53187 * 109.49799 * 120.10119 * 2 1 3 5 5 N 1.46931 * 108.77309 * 174.58667 * 4 2 1 6 6 C 1.34772 * 120.62926 * 126.41675 * 5 4 2 7 7 O 1.21280 * 120.00243 * 359.97438 * 6 5 4 8 8 C 1.50699 * 119.99949 * 180.02562 * 6 5 4 9 9 O 1.42898 * 109.47189 * 179.97438 * 8 6 5 10 10 C 1.42901 * 114.00277 * 179.97438 * 9 8 6 11 11 C 1.50696 * 109.47632 * 179.97438 * 10 9 8 12 12 N 1.30499 * 125.65293 * 269.69612 * 11 10 9 13 13 C 1.34124 * 109.26116 * 179.89183 * 12 11 10 14 14 C 1.34672 * 108.01738 * 0.36760 * 13 12 11 15 15 N 1.35047 * 125.65201 * 89.99760 * 11 10 9 16 16 C 1.46504 * 126.39132 * 359.97438 * 15 11 10 17 17 C 1.46923 * 118.73730 * 306.38501 * 5 4 2 18 18 C 1.53195 * 108.77575 * 53.61542 * 17 5 4 19 19 C 1.53043 * 109.49393 * 239.93668 * 2 1 3 20 20 H 1.08998 * 109.46060 * 58.66545 * 19 2 1 21 21 N 1.46496 * 109.44915 * 298.69525 * 19 2 1 22 22 C 1.36949 * 119.99616 * 154.94210 * 21 19 2 23 23 H 1.07999 * 119.99880 * 359.97438 * 22 21 19 24 24 C 1.38805 * 119.99695 * 179.97438 * 22 21 19 25 25 N 1.31624 * 120.00137 * 359.97438 * 24 22 21 26 26 Si 1.86797 * 120.00095 * 179.97438 * 24 22 21 27 27 H 1.48499 * 109.47290 * 59.99657 * 26 24 22 28 28 H 1.48498 * 109.47538 * 180.02562 * 26 24 22 29 29 H 1.48509 * 109.46927 * 299.99991 * 26 24 22 30 30 H 1.09000 * 109.46682 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.46678 * 300.05876 * 1 2 3 32 32 H 1.08991 * 109.47219 * 60.06166 * 1 2 3 33 33 H 1.09001 * 109.58881 * 294.37192 * 4 2 1 34 34 H 1.08996 * 109.58907 * 54.66000 * 4 2 1 35 35 H 1.09002 * 109.47044 * 299.99355 * 8 6 5 36 36 H 1.09001 * 109.47565 * 59.99202 * 8 6 5 37 37 H 1.08998 * 109.47274 * 300.00178 * 10 9 8 38 38 H 1.09008 * 109.47119 * 59.99649 * 10 9 8 39 39 H 1.07994 * 125.99587 * 180.11053 * 13 12 11 40 40 H 1.08003 * 126.59228 * 179.81778 * 14 13 12 41 41 H 1.08992 * 109.47569 * 90.00417 * 16 15 11 42 42 H 1.09006 * 109.46723 * 209.99784 * 16 15 11 43 43 H 1.08999 * 109.47207 * 329.99403 * 16 15 11 44 44 H 1.08996 * 109.59375 * 293.82604 * 17 5 4 45 45 H 1.09006 * 109.58686 * 173.39604 * 17 5 4 46 46 H 1.08990 * 109.49959 * 185.41234 * 18 17 5 47 47 H 1.08999 * 109.49609 * 65.30943 * 18 17 5 48 48 H 0.96998 * 120.00391 * 334.93653 * 21 19 2 49 49 H 0.97007 * 119.99805 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0413 -0.7242 1.2493 5 7 3.5047 -0.8295 1.1692 6 6 4.2812 -0.3872 2.1780 7 8 3.7732 0.1038 3.1638 8 6 5.7806 -0.5016 2.0807 9 8 6.3770 0.0324 3.2644 10 6 7.8047 -0.0285 3.2744 11 6 8.3236 0.5588 4.5615 12 7 8.6349 1.8112 4.7551 13 6 9.0582 1.9719 6.0176 14 6 9.0150 0.7719 6.6273 15 7 8.5491 -0.1249 5.7041 16 6 8.3352 -1.5587 5.9158 17 6 4.1053 -1.4267 -0.0313 18 6 3.5709 -0.6946 -1.2664 19 6 2.0408 -0.7227 -1.2486 20 1 1.6581 -0.2238 -2.1390 21 7 1.5783 -2.1127 -1.2311 22 6 1.4468 -2.8053 -2.4052 23 1 1.6836 -2.3267 -3.3439 24 6 1.0091 -4.1224 -2.3886 25 7 0.7210 -4.7059 -1.2445 26 14 0.8290 -5.0671 -3.9900 27 1 2.1446 -5.1348 -4.6755 28 1 0.3489 -6.4425 -3.7022 29 1 -0.1503 -4.3746 -4.8657 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3632 0.5148 0.8895 32 1 -0.3633 0.5128 -0.8905 33 1 1.7638 -0.1587 2.1388 34 1 1.6034 -1.7211 1.2987 35 1 6.0589 -1.5502 1.9746 36 1 6.1322 0.0571 1.2133 37 1 8.1246 -1.0674 3.1936 38 1 8.1985 0.5394 2.4314 39 1 9.3813 2.8999 6.4654 40 1 9.2938 0.5582 7.6486 41 1 9.2457 -2.1028 5.6654 42 1 8.0807 -1.7377 6.9605 43 1 7.5198 -1.9022 5.2792 44 1 3.8376 -2.4818 -0.0877 45 1 5.1896 -1.3246 0.0131 46 1 3.9333 -1.1890 -2.1675 47 1 3.9159 0.3392 -1.2541 48 1 1.3653 -2.5424 -0.3880 49 1 0.4147 -5.6263 -1.2330 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001496354723.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:13:06 Heat of formation + Delta-G solvation = -17.623110 kcal Electronic energy + Delta-G solvation = -29430.910501 eV Core-core repulsion = 25394.099755 eV Total energy + Delta-G solvation = -4036.810746 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -43.04890 -41.38575 -39.43908 -38.36045 -35.86671 -34.96353 -34.50905 -32.98149 -32.01335 -30.90143 -29.67597 -28.05679 -27.33295 -26.71794 -25.86929 -25.18664 -23.03952 -22.37828 -21.21957 -20.88745 -19.64167 -19.23001 -18.57188 -18.01156 -17.58600 -17.35475 -16.86190 -16.56016 -16.17370 -16.00847 -15.90646 -15.53828 -15.38148 -15.13652 -14.81259 -14.53535 -14.35211 -14.26251 -14.00765 -13.78055 -13.60039 -13.49517 -13.17164 -13.00897 -12.96470 -12.80738 -12.73420 -12.64854 -12.38138 -12.14627 -11.95098 -11.88215 -11.55917 -11.14383 -11.03315 -10.90117 -10.84777 -10.72455 -10.59670 -9.61237 -9.45805 -8.89624 -7.86108 -5.12135 0.87119 1.51867 1.53127 1.54332 1.58673 1.67521 1.90226 2.11401 2.62045 2.90692 3.40624 3.47849 3.66836 3.80988 3.87346 3.89376 3.95907 4.05228 4.11982 4.14842 4.20877 4.24176 4.35186 4.37784 4.39349 4.41597 4.54600 4.56257 4.67062 4.68995 4.72518 4.77679 4.86017 4.97501 5.05177 5.15661 5.22209 5.28348 5.31040 5.33370 5.49389 5.62491 5.64222 5.79385 5.92027 6.17637 6.35639 6.43495 7.08230 7.12479 7.43357 8.19722 8.43354 9.36909 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.019461 B = 0.002265 C = 0.002159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1438.461152 B =12357.814115 C =12963.002396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.098 4.098 3 H 0.084 0.916 4 C 0.125 3.875 5 N -0.598 5.598 6 C 0.509 3.491 7 O -0.580 6.580 8 C 0.051 3.949 9 O -0.391 6.391 10 C 0.147 3.853 11 C 0.177 3.823 12 N -0.517 5.517 13 C -0.061 4.061 14 C -0.040 4.040 15 N -0.451 5.451 16 C 0.061 3.939 17 C 0.116 3.884 18 C -0.143 4.143 19 C 0.171 3.829 20 H 0.047 0.953 21 N -0.724 5.724 22 C -0.225 4.225 23 H 0.076 0.924 24 C -0.073 4.073 25 N -0.969 5.969 26 Si 0.963 3.037 27 H -0.278 1.278 28 H -0.304 1.304 29 H -0.285 1.285 30 H 0.040 0.960 31 H 0.061 0.939 32 H 0.059 0.941 33 H 0.076 0.924 34 H 0.052 0.948 35 H 0.113 0.887 36 H 0.113 0.887 37 H 0.100 0.900 38 H 0.094 0.906 39 H 0.187 0.813 40 H 0.214 0.786 41 H 0.102 0.898 42 H 0.106 0.894 43 H 0.086 0.914 44 H 0.058 0.942 45 H 0.112 0.888 46 H 0.072 0.928 47 H 0.077 0.923 48 H 0.373 0.627 49 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.398 7.417 10.952 22.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.118 4.118 3 H 0.102 0.898 4 C 0.003 3.997 5 N -0.331 5.331 6 C 0.298 3.702 7 O -0.460 6.460 8 C -0.028 4.028 9 O -0.309 6.309 10 C 0.069 3.931 11 C -0.085 4.085 12 N -0.238 5.238 13 C -0.209 4.209 14 C -0.174 4.174 15 N -0.134 5.134 16 C -0.080 4.080 17 C -0.006 4.006 18 C -0.184 4.184 19 C 0.062 3.938 20 H 0.065 0.935 21 N -0.365 5.365 22 C -0.357 4.357 23 H 0.094 0.906 24 C -0.265 4.265 25 N -0.621 5.621 26 Si 0.794 3.206 27 H -0.204 1.204 28 H -0.230 1.230 29 H -0.211 1.211 30 H 0.059 0.941 31 H 0.080 0.920 32 H 0.078 0.922 33 H 0.095 0.905 34 H 0.071 0.929 35 H 0.131 0.869 36 H 0.131 0.869 37 H 0.118 0.882 38 H 0.112 0.888 39 H 0.204 0.796 40 H 0.230 0.770 41 H 0.121 0.879 42 H 0.124 0.876 43 H 0.105 0.895 44 H 0.076 0.924 45 H 0.130 0.870 46 H 0.090 0.910 47 H 0.095 0.905 48 H 0.207 0.793 49 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 17.932 8.134 10.846 22.480 hybrid contribution -0.539 -1.605 -0.043 1.693 sum 17.393 6.529 10.803 21.491 Atomic orbital electron populations 1.21605 0.94234 1.01501 1.01674 1.21627 0.96498 0.99297 0.94403 0.89790 1.21452 0.79384 1.00189 0.98721 1.48103 1.06627 1.59905 1.18465 1.20847 0.90075 0.77244 0.82045 1.90678 1.76290 1.46347 1.32687 1.22376 0.88875 1.02055 0.89488 1.88036 1.19622 1.83671 1.39621 1.20723 0.80056 1.01103 0.91173 1.22984 1.06212 0.88333 0.90929 1.70134 1.17571 1.16325 1.19771 1.22798 1.07725 0.99565 0.90821 1.23370 1.06823 0.89504 0.97741 1.45573 1.46982 1.10792 1.10043 1.22400 1.04421 0.75522 1.05636 1.21799 0.98514 0.97282 0.82976 1.22405 0.98007 1.00419 0.97568 1.20455 0.92700 0.85121 0.95526 0.93479 1.42585 1.79177 1.09217 1.05570 1.19530 1.34707 0.93759 0.87701 0.90637 1.25370 1.03679 0.98484 0.99008 1.69799 1.53924 1.12847 1.25482 0.85365 0.77856 0.77319 0.80101 1.20392 1.23044 1.21122 0.94059 0.91994 0.92154 0.90511 0.92929 0.86897 0.86898 0.88196 0.88824 0.79594 0.76955 0.87950 0.87578 0.89491 0.92366 0.87003 0.90985 0.90474 0.79318 0.94433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.20 9.05 71.98 0.65 -3.55 16 2 C -0.10 -3.10 2.67 -10.72 -0.03 -3.13 16 3 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 4 C 0.13 4.24 5.42 86.36 0.47 4.71 16 5 N -0.60 -18.10 2.97 -818.91 -2.43 -20.54 16 6 C 0.51 15.83 7.77 87.66 0.68 16.51 16 7 O -0.58 -23.57 15.91 16.01 0.25 -23.32 16 8 C 0.05 1.07 4.76 71.24 0.34 1.41 16 9 O -0.39 -10.21 9.86 -129.94 -1.28 -11.49 16 10 C 0.15 2.74 6.02 71.23 0.43 3.17 16 11 C 0.18 4.18 7.53 138.13 1.04 5.22 16 12 N -0.52 -14.44 11.25 -188.14 -2.12 -16.55 16 13 C -0.06 -1.32 11.87 83.52 0.99 -0.32 16 14 C -0.04 -0.65 11.58 83.09 0.96 0.31 16 15 N -0.45 -8.08 3.15 -537.61 -1.69 -9.77 16 16 C 0.06 0.57 10.79 127.77 1.38 1.95 16 17 C 0.12 3.13 6.08 86.36 0.53 3.66 16 18 C -0.14 -4.08 5.78 30.67 0.18 -3.90 16 19 C 0.17 5.96 2.53 45.02 0.11 6.07 16 20 H 0.05 1.70 8.08 -2.39 -0.02 1.68 16 21 N -0.72 -32.40 3.64 -322.80 -1.17 -33.57 16 22 C -0.22 -11.37 9.93 84.03 0.83 -10.53 16 23 H 0.08 3.66 7.83 -2.91 -0.02 3.64 16 24 C -0.07 -3.95 5.50 84.86 0.47 -3.49 16 25 N -0.97 -56.50 13.06 21.65 0.28 -56.22 16 26 Si 0.96 44.13 29.55 68.60 2.03 46.16 16 27 H -0.28 -12.15 7.11 99.48 0.71 -11.45 16 28 H -0.30 -14.37 7.11 99.48 0.71 -13.66 16 29 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 30 H 0.04 1.56 7.54 -2.39 -0.02 1.54 16 31 H 0.06 1.72 8.14 -2.39 -0.02 1.71 16 32 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 33 H 0.08 2.71 7.01 -2.39 -0.02 2.69 16 34 H 0.05 2.03 6.64 -2.39 -0.02 2.01 16 35 H 0.11 1.66 7.94 -2.39 -0.02 1.65 16 36 H 0.11 1.72 7.69 -2.39 -0.02 1.71 16 37 H 0.10 1.12 7.71 -2.39 -0.02 1.10 16 38 H 0.09 1.53 8.14 -2.38 -0.02 1.51 16 39 H 0.19 3.02 8.06 -2.91 -0.02 3.00 16 40 H 0.21 1.59 8.06 -2.91 -0.02 1.56 16 41 H 0.10 0.48 8.14 -2.39 -0.02 0.46 16 42 H 0.11 0.62 8.14 -2.38 -0.02 0.60 16 43 H 0.09 0.93 7.66 -2.39 -0.02 0.91 16 44 H 0.06 1.96 7.74 -2.39 -0.02 1.94 16 45 H 0.11 2.03 5.93 -2.38 -0.01 2.01 16 46 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 47 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 48 H 0.37 18.41 5.93 -92.71 -0.55 17.86 16 49 H 0.25 14.24 8.31 -92.70 -0.77 13.47 16 Total: -1.00 -78.55 395.26 3.29 -75.25 By element: Atomic # 1 Polarization: 31.57 SS G_CDS: 0.40 Total: 31.97 kcal Atomic # 6 Polarization: 9.05 SS G_CDS: 9.03 Total: 18.08 kcal Atomic # 7 Polarization: -129.52 SS G_CDS: -7.14 Total: -136.65 kcal Atomic # 8 Polarization: -33.78 SS G_CDS: -1.03 Total: -34.81 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 2.03 Total: 46.16 kcal Total: -78.55 3.29 -75.25 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001496354723.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.628 kcal (2) G-P(sol) polarization free energy of solvation -78.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.251 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds