Wall clock time and date at job start Tue Mar 31 2020 19:13:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09001 * 109.52389 * 2 1 4 4 C 1.53191 * 109.49475 * 120.07925 * 2 1 3 5 5 N 1.46928 * 108.77343 * 174.58721 * 4 2 1 6 6 C 1.34784 * 120.62829 * 126.41175 * 5 4 2 7 7 O 1.21280 * 119.99866 * 359.97438 * 6 5 4 8 8 C 1.50702 * 119.99526 * 179.97438 * 6 5 4 9 9 O 1.42901 * 109.46552 * 180.02562 * 8 6 5 10 10 C 1.42898 * 113.99732 * 180.02562 * 9 8 6 11 11 C 1.50703 * 109.47404 * 179.97438 * 10 9 8 12 12 N 1.30501 * 125.64971 * 269.69602 * 11 10 9 13 13 C 1.34122 * 109.25388 * 179.89051 * 12 11 10 14 14 C 1.34668 * 108.02307 * 0.36488 * 13 12 11 15 15 N 1.35042 * 125.64881 * 89.99616 * 11 10 9 16 16 C 1.46497 * 126.39905 * 359.97438 * 15 11 10 17 17 C 1.46919 * 118.73982 * 306.39079 * 5 4 2 18 18 C 1.53195 * 108.89273 * 53.53793 * 17 5 4 19 19 C 1.53039 * 109.49929 * 239.91849 * 2 1 3 20 20 H 1.09007 * 109.45640 * 298.70737 * 19 2 1 21 21 N 1.46499 * 109.46160 * 58.66119 * 19 2 1 22 22 C 1.36928 * 120.00250 * 205.00378 * 21 19 2 23 23 H 1.08000 * 120.00193 * 359.97438 * 22 21 19 24 24 C 1.38812 * 120.00515 * 180.02562 * 22 21 19 25 25 N 1.31626 * 119.99431 * 359.97438 * 24 22 21 26 26 Si 1.86798 * 120.00596 * 179.97438 * 24 22 21 27 27 H 1.48501 * 109.47181 * 89.99406 * 26 24 22 28 28 H 1.48496 * 109.47380 * 209.99676 * 26 24 22 29 29 H 1.48503 * 109.46510 * 329.99402 * 26 24 22 30 30 H 1.08996 * 109.47522 * 299.92308 * 1 2 3 31 31 H 1.09006 * 109.47027 * 59.92218 * 1 2 3 32 32 H 1.08998 * 109.46892 * 179.91700 * 1 2 3 33 33 H 1.08998 * 109.58966 * 54.79787 * 4 2 1 34 34 H 1.08999 * 109.58758 * 294.37144 * 4 2 1 35 35 H 1.08996 * 109.47104 * 299.99859 * 8 6 5 36 36 H 1.08994 * 109.47167 * 60.00297 * 8 6 5 37 37 H 1.09000 * 109.47114 * 299.99877 * 10 9 8 38 38 H 1.08996 * 109.47208 * 59.99705 * 10 9 8 39 39 H 1.08003 * 125.98813 * 180.11629 * 13 12 11 40 40 H 1.08000 * 126.59259 * 179.80884 * 14 13 12 41 41 H 1.09008 * 109.46885 * 89.99758 * 16 15 11 42 42 H 1.08994 * 109.47553 * 209.99600 * 16 15 11 43 43 H 1.09001 * 109.47010 * 330.00335 * 16 15 11 44 44 H 1.09002 * 109.58751 * 173.39743 * 17 5 4 45 45 H 1.08996 * 109.58750 * 293.67928 * 17 5 4 46 46 H 1.08997 * 109.50046 * 65.38734 * 18 17 5 47 47 H 1.09003 * 109.49733 * 185.48713 * 18 17 5 48 48 H 0.97007 * 119.99658 * 24.99911 * 21 19 2 49 49 H 0.97006 * 119.99397 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0413 -0.7238 1.2496 5 7 3.5046 -0.8291 1.1696 6 6 4.2811 -0.3863 2.1784 7 8 3.7730 0.1052 3.1639 8 6 5.7805 -0.5019 2.0816 9 8 6.3767 0.0318 3.2656 10 6 7.8044 -0.0292 3.2756 11 6 8.3233 0.5578 4.5630 12 7 8.6345 1.8102 4.7569 13 6 9.0577 1.9705 6.0195 14 6 9.0144 0.7703 6.6289 15 7 8.5486 -0.1262 5.7054 16 6 8.3346 -1.5600 5.9168 17 6 4.1053 -1.4267 -0.0306 18 6 3.5713 -0.6980 -1.2679 19 6 2.0409 -0.7231 -1.2483 20 1 1.6967 -1.7573 -1.2352 21 7 1.5266 -0.0530 -2.4453 22 6 1.3965 -0.7493 -3.6171 23 1 1.6734 -1.7923 -3.6592 24 6 0.9097 -0.1143 -4.7515 25 7 0.5727 1.1571 -4.7004 26 14 0.7328 -1.0639 -6.3503 27 1 -0.6186 -1.6759 -6.4157 28 1 0.9135 -0.1391 -7.4980 29 1 1.7632 -2.1318 -6.4082 30 1 -0.3634 0.5126 0.8906 31 1 -0.3633 0.5151 -0.8893 32 1 -0.3633 -1.0277 -0.0015 33 1 1.6052 -1.7215 1.2981 34 1 1.7638 -0.1579 2.1389 35 1 6.0580 -1.5507 1.9765 36 1 6.1327 0.0559 1.2139 37 1 8.1243 -1.0680 3.1946 38 1 8.1982 0.5390 2.4330 39 1 9.3807 2.8985 6.4676 40 1 9.2932 0.5564 7.6501 41 1 9.2454 -2.1040 5.6662 42 1 8.0801 -1.7393 6.9613 43 1 7.5194 -1.9034 5.2799 44 1 5.1896 -1.3246 0.0139 45 1 3.8397 -2.4824 -0.0852 46 1 3.9164 0.3358 -1.2585 47 1 3.9340 -1.1951 -2.1676 48 1 1.2782 0.8839 -2.4076 49 1 0.2322 1.6007 -5.4930 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001496354724.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:13:12 Heat of formation + Delta-G solvation = 2.143654 kcal Electronic energy + Delta-G solvation = -28993.360753 eV Core-core repulsion = 24957.407158 eV Total energy + Delta-G solvation = -4035.953595 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.37184 -40.21604 -38.27752 -37.24212 -34.65463 -34.34681 -32.94947 -31.53199 -31.27710 -29.44138 -28.66888 -27.49448 -26.37247 -25.61359 -24.69193 -22.82090 -21.70707 -21.68893 -20.40026 -19.99543 -19.02627 -17.78510 -17.28724 -17.08995 -16.68105 -16.52343 -15.97179 -15.44147 -15.09616 -14.96555 -14.65221 -14.31791 -14.09087 -13.80674 -13.77272 -13.35238 -13.31782 -13.27673 -13.16054 -13.01542 -12.54467 -12.40534 -12.22757 -12.00103 -11.76467 -11.60831 -11.19575 -10.96324 -10.84088 -10.66267 -10.42921 -10.25845 -10.22239 -10.11462 -9.92247 -9.79440 -9.67470 -9.64073 -8.93396 -8.76498 -8.52117 -6.99423 -5.80029 -3.08975 1.56003 2.37798 2.57785 2.62313 2.97675 3.40139 3.45145 3.47324 3.67124 4.19879 4.28473 4.39066 4.54160 4.55623 4.66883 4.70373 4.81863 4.88984 4.95602 5.00166 5.04566 5.15309 5.22741 5.25039 5.31130 5.44132 5.49270 5.53503 5.66162 5.75545 5.92016 5.94066 6.06058 6.11196 6.26421 6.34133 6.41346 6.45055 6.45641 6.58759 6.66862 6.77858 6.80755 6.90918 7.02356 7.44004 7.65528 7.80569 8.19884 8.38044 9.49446 10.06973 10.41726 11.42326 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.022933 B = 0.002004 C = 0.001952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1220.628867 B =13968.494173 C =14338.655872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.110 4.110 3 H 0.070 0.930 4 C 0.122 3.878 5 N -0.605 5.605 6 C 0.516 3.484 7 O -0.527 6.527 8 C 0.046 3.954 9 O -0.357 6.357 10 C 0.148 3.852 11 C 0.204 3.796 12 N -0.470 5.470 13 C -0.027 4.027 14 C -0.052 4.052 15 N -0.451 5.451 16 C 0.069 3.931 17 C 0.106 3.894 18 C -0.153 4.153 19 C 0.184 3.816 20 H 0.048 0.952 21 N -0.720 5.720 22 C -0.239 4.239 23 H 0.070 0.930 24 C -0.013 4.013 25 N -0.931 5.931 26 Si 0.905 3.095 27 H -0.290 1.290 28 H -0.292 1.292 29 H -0.283 1.283 30 H 0.043 0.957 31 H 0.074 0.926 32 H 0.050 0.950 33 H 0.067 0.933 34 H 0.088 0.912 35 H 0.080 0.920 36 H 0.086 0.914 37 H 0.067 0.933 38 H 0.087 0.913 39 H 0.173 0.827 40 H 0.177 0.823 41 H 0.078 0.922 42 H 0.088 0.912 43 H 0.090 0.910 44 H 0.074 0.926 45 H 0.070 0.930 46 H 0.061 0.939 47 H 0.077 0.923 48 H 0.384 0.616 49 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.702 -8.120 20.468 27.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.130 4.130 3 H 0.088 0.912 4 C 0.000 4.000 5 N -0.340 5.340 6 C 0.302 3.698 7 O -0.402 6.402 8 C -0.034 4.034 9 O -0.274 6.274 10 C 0.070 3.930 11 C -0.057 4.057 12 N -0.190 5.190 13 C -0.176 4.176 14 C -0.185 4.185 15 N -0.134 5.134 16 C -0.074 4.074 17 C -0.018 4.018 18 C -0.194 4.194 19 C 0.073 3.927 20 H 0.066 0.934 21 N -0.361 5.361 22 C -0.370 4.370 23 H 0.088 0.912 24 C -0.209 4.209 25 N -0.579 5.579 26 Si 0.737 3.263 27 H -0.218 1.218 28 H -0.218 1.218 29 H -0.208 1.208 30 H 0.062 0.938 31 H 0.093 0.907 32 H 0.069 0.931 33 H 0.085 0.915 34 H 0.107 0.893 35 H 0.098 0.902 36 H 0.104 0.896 37 H 0.085 0.915 38 H 0.105 0.895 39 H 0.190 0.810 40 H 0.194 0.806 41 H 0.097 0.903 42 H 0.107 0.893 43 H 0.109 0.891 44 H 0.092 0.908 45 H 0.088 0.912 46 H 0.079 0.921 47 H 0.096 0.904 48 H 0.218 0.782 49 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 16.209 -7.451 20.417 27.113 hybrid contribution 0.149 -0.944 -0.564 1.109 sum 16.358 -8.394 19.853 27.059 Atomic orbital electron populations 1.21657 0.94048 1.01767 1.01906 1.21748 0.96641 1.00125 0.94518 0.91162 1.21719 0.77950 1.00866 0.99481 1.48100 1.07263 1.60742 1.17911 1.20061 0.88224 0.78432 0.83042 1.90717 1.75001 1.43555 1.30965 1.22301 0.92225 0.99643 0.89250 1.88090 1.17714 1.83130 1.38511 1.20508 0.81741 0.99082 0.91714 1.22610 1.05438 0.88234 0.89455 1.70230 1.15993 1.14736 1.18006 1.22359 1.06400 0.97838 0.91042 1.22769 1.08840 0.90310 0.96607 1.45276 1.48110 1.09347 1.10653 1.22110 1.03261 0.77560 1.04470 1.21901 0.97269 0.97619 0.84970 1.22710 1.00545 1.00508 0.95669 1.20193 0.90292 0.95712 0.86474 0.93420 1.42411 1.76450 1.11459 1.05745 1.19200 1.36037 0.94079 0.87686 0.91238 1.24744 1.02075 0.96020 0.98076 1.69665 1.49854 1.09455 1.28935 0.86219 0.77759 0.78651 0.83698 1.21780 1.21843 1.20829 0.93779 0.90720 0.93051 0.91478 0.89324 0.90168 0.89571 0.91537 0.89506 0.81012 0.80601 0.90340 0.89314 0.89105 0.90778 0.91206 0.92060 0.90421 0.78174 0.93497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.20 9.02 37.16 0.34 -1.86 16 2 C -0.11 -1.79 2.46 -90.50 -0.22 -2.02 16 3 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 4 C 0.12 1.75 5.72 -3.71 -0.02 1.73 16 5 N -0.61 -8.19 2.97 -172.77 -0.51 -8.71 16 6 C 0.52 7.51 7.78 -10.98 -0.09 7.42 16 7 O -0.53 -9.92 15.91 -14.35 -0.23 -10.15 16 8 C 0.05 0.48 4.76 36.01 0.17 0.65 16 9 O -0.36 -4.59 9.86 -55.14 -0.54 -5.14 16 10 C 0.15 1.41 6.02 36.01 0.22 1.62 16 11 C 0.20 2.38 7.53 -155.41 -1.17 1.21 16 12 N -0.47 -6.42 11.25 -10.82 -0.12 -6.55 16 13 C -0.03 -0.29 11.87 -17.82 -0.21 -0.50 16 14 C -0.05 -0.44 11.58 -16.56 -0.19 -0.63 16 15 N -0.45 -4.09 3.15 -121.28 -0.38 -4.47 16 16 C 0.07 0.33 10.79 59.85 0.65 0.98 16 17 C 0.11 1.23 6.34 -3.71 -0.02 1.21 16 18 C -0.15 -2.40 5.67 -26.59 -0.15 -2.55 16 19 C 0.18 3.35 2.19 -67.87 -0.15 3.20 16 20 H 0.05 0.89 8.08 -51.93 -0.42 0.47 16 21 N -0.72 -16.93 4.41 -53.37 -0.24 -17.16 16 22 C -0.24 -6.27 9.93 -15.06 -0.15 -6.42 16 23 H 0.07 1.76 7.83 -52.49 -0.41 1.35 16 24 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 25 N -0.93 -27.40 13.06 55.49 0.72 -26.68 16 26 Si 0.91 21.75 29.55 -169.99 -5.02 16.73 16 27 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 28 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 29 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 30 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 31 H 0.07 1.42 7.36 -51.93 -0.38 1.03 16 32 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 34 H 0.09 1.36 7.00 -51.93 -0.36 1.00 16 35 H 0.08 0.58 7.94 -51.93 -0.41 0.16 16 36 H 0.09 0.78 7.69 -51.93 -0.40 0.38 16 37 H 0.07 0.40 7.71 -51.93 -0.40 0.00 16 38 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.17 1.37 8.06 -52.48 -0.42 0.94 16 40 H 0.18 0.83 8.06 -52.49 -0.42 0.41 16 41 H 0.08 0.23 8.14 -51.92 -0.42 -0.19 16 42 H 0.09 0.29 8.14 -51.93 -0.42 -0.13 16 43 H 0.09 0.45 7.66 -51.93 -0.40 0.06 16 44 H 0.07 0.65 5.93 -51.93 -0.31 0.34 16 45 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 46 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 47 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 48 H 0.38 9.83 7.50 -40.82 -0.31 9.53 16 49 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 399.20 15.07 6.02 6.02 Total: -1.00 -36.29 399.20 -9.42 -45.71 By element: Atomic # 1 Polarization: 14.81 SS G_CDS: -8.01 Total: 6.80 kcal Atomic # 6 Polarization: 4.70 SS G_CDS: -1.10 Total: 3.60 kcal Atomic # 7 Polarization: -63.04 SS G_CDS: -0.53 Total: -63.56 kcal Atomic # 8 Polarization: -14.52 SS G_CDS: -0.77 Total: -15.29 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -36.29 -9.42 -45.71 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001496354724.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.855 kcal (2) G-P(sol) polarization free energy of solvation -36.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.711 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds