Wall clock time and date at job start Tue Mar 31 2020 19:13:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09001 * 109.52389 * 2 1 4 4 C 1.53191 * 109.49475 * 120.07925 * 2 1 3 5 5 N 1.46928 * 108.77343 * 174.58721 * 4 2 1 6 6 C 1.34784 * 120.62829 * 126.41175 * 5 4 2 7 7 O 1.21280 * 119.99866 * 359.97438 * 6 5 4 8 8 C 1.50702 * 119.99526 * 179.97438 * 6 5 4 9 9 O 1.42901 * 109.46552 * 180.02562 * 8 6 5 10 10 C 1.42898 * 113.99732 * 180.02562 * 9 8 6 11 11 C 1.50703 * 109.47404 * 179.97438 * 10 9 8 12 12 N 1.30501 * 125.64971 * 269.69602 * 11 10 9 13 13 C 1.34122 * 109.25388 * 179.89051 * 12 11 10 14 14 C 1.34668 * 108.02307 * 0.36488 * 13 12 11 15 15 N 1.35042 * 125.64881 * 89.99616 * 11 10 9 16 16 C 1.46497 * 126.39905 * 359.97438 * 15 11 10 17 17 C 1.46919 * 118.73982 * 306.39079 * 5 4 2 18 18 C 1.53195 * 108.89273 * 53.53793 * 17 5 4 19 19 C 1.53039 * 109.49929 * 239.91849 * 2 1 3 20 20 H 1.09007 * 109.45640 * 298.70737 * 19 2 1 21 21 N 1.46499 * 109.46160 * 58.66119 * 19 2 1 22 22 C 1.36928 * 120.00250 * 205.00378 * 21 19 2 23 23 H 1.08000 * 120.00193 * 359.97438 * 22 21 19 24 24 C 1.38812 * 120.00515 * 180.02562 * 22 21 19 25 25 N 1.31626 * 119.99431 * 359.97438 * 24 22 21 26 26 Si 1.86798 * 120.00596 * 179.97438 * 24 22 21 27 27 H 1.48501 * 109.47181 * 89.99406 * 26 24 22 28 28 H 1.48496 * 109.47380 * 209.99676 * 26 24 22 29 29 H 1.48503 * 109.46510 * 329.99402 * 26 24 22 30 30 H 1.08996 * 109.47522 * 299.92308 * 1 2 3 31 31 H 1.09006 * 109.47027 * 59.92218 * 1 2 3 32 32 H 1.08998 * 109.46892 * 179.91700 * 1 2 3 33 33 H 1.08998 * 109.58966 * 54.79787 * 4 2 1 34 34 H 1.08999 * 109.58758 * 294.37144 * 4 2 1 35 35 H 1.08996 * 109.47104 * 299.99859 * 8 6 5 36 36 H 1.08994 * 109.47167 * 60.00297 * 8 6 5 37 37 H 1.09000 * 109.47114 * 299.99877 * 10 9 8 38 38 H 1.08996 * 109.47208 * 59.99705 * 10 9 8 39 39 H 1.08003 * 125.98813 * 180.11629 * 13 12 11 40 40 H 1.08000 * 126.59259 * 179.80884 * 14 13 12 41 41 H 1.09008 * 109.46885 * 89.99758 * 16 15 11 42 42 H 1.08994 * 109.47553 * 209.99600 * 16 15 11 43 43 H 1.09001 * 109.47010 * 330.00335 * 16 15 11 44 44 H 1.09002 * 109.58751 * 173.39743 * 17 5 4 45 45 H 1.08996 * 109.58750 * 293.67928 * 17 5 4 46 46 H 1.08997 * 109.50046 * 65.38734 * 18 17 5 47 47 H 1.09003 * 109.49733 * 185.48713 * 18 17 5 48 48 H 0.97007 * 119.99658 * 24.99911 * 21 19 2 49 49 H 0.97006 * 119.99397 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0413 -0.7238 1.2496 5 7 3.5046 -0.8291 1.1696 6 6 4.2811 -0.3863 2.1784 7 8 3.7730 0.1052 3.1639 8 6 5.7805 -0.5019 2.0816 9 8 6.3767 0.0318 3.2656 10 6 7.8044 -0.0292 3.2756 11 6 8.3233 0.5578 4.5630 12 7 8.6345 1.8102 4.7569 13 6 9.0577 1.9705 6.0195 14 6 9.0144 0.7703 6.6289 15 7 8.5486 -0.1262 5.7054 16 6 8.3346 -1.5600 5.9168 17 6 4.1053 -1.4267 -0.0306 18 6 3.5713 -0.6980 -1.2679 19 6 2.0409 -0.7231 -1.2483 20 1 1.6967 -1.7573 -1.2352 21 7 1.5266 -0.0530 -2.4453 22 6 1.3965 -0.7493 -3.6171 23 1 1.6734 -1.7923 -3.6592 24 6 0.9097 -0.1143 -4.7515 25 7 0.5727 1.1571 -4.7004 26 14 0.7328 -1.0639 -6.3503 27 1 -0.6186 -1.6759 -6.4157 28 1 0.9135 -0.1391 -7.4980 29 1 1.7632 -2.1318 -6.4082 30 1 -0.3634 0.5126 0.8906 31 1 -0.3633 0.5151 -0.8893 32 1 -0.3633 -1.0277 -0.0015 33 1 1.6052 -1.7215 1.2981 34 1 1.7638 -0.1579 2.1389 35 1 6.0580 -1.5507 1.9765 36 1 6.1327 0.0559 1.2139 37 1 8.1243 -1.0680 3.1946 38 1 8.1982 0.5390 2.4330 39 1 9.3807 2.8985 6.4676 40 1 9.2932 0.5564 7.6501 41 1 9.2454 -2.1040 5.6662 42 1 8.0801 -1.7393 6.9613 43 1 7.5194 -1.9034 5.2799 44 1 5.1896 -1.3246 0.0139 45 1 3.8397 -2.4824 -0.0852 46 1 3.9164 0.3358 -1.2585 47 1 3.9340 -1.1951 -2.1676 48 1 1.2782 0.8839 -2.4076 49 1 0.2322 1.6007 -5.4930 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001496354724.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:13:11 Heat of formation + Delta-G solvation = -21.869900 kcal Electronic energy + Delta-G solvation = -28994.402058 eV Core-core repulsion = 24957.407158 eV Total energy + Delta-G solvation = -4036.994901 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -43.04626 -41.34100 -39.35044 -38.35009 -36.17318 -34.95924 -34.50424 -33.05625 -32.01596 -31.04209 -29.63812 -28.04737 -27.33018 -26.76369 -26.07449 -24.31391 -23.06319 -22.37965 -21.37202 -21.03567 -20.19992 -19.02274 -18.59357 -18.01801 -17.61307 -17.33163 -16.89465 -16.72292 -16.17496 -15.98870 -15.72401 -15.49432 -15.41410 -15.11880 -14.89279 -14.55920 -14.37424 -14.07786 -13.98628 -13.77264 -13.62574 -13.45943 -13.13929 -13.13524 -12.96637 -12.84893 -12.75091 -12.71852 -12.45709 -12.12937 -12.02049 -11.83541 -11.64763 -11.13680 -11.02316 -10.93843 -10.84079 -10.73717 -10.58922 -9.68294 -9.45889 -8.94531 -7.89162 -5.16744 0.87449 1.49920 1.50929 1.52436 1.59033 1.67980 1.90821 2.11020 2.59588 2.91121 3.40196 3.44749 3.67211 3.80418 3.81178 3.85795 3.97126 4.03559 4.08769 4.16483 4.22510 4.25799 4.33154 4.38807 4.41696 4.42067 4.52191 4.56365 4.67874 4.68850 4.78093 4.79625 4.81632 4.85388 4.99773 5.02990 5.18909 5.28061 5.32545 5.41421 5.52161 5.57801 5.64999 5.79149 5.92237 6.19047 6.31899 6.39219 7.09118 7.12077 7.38388 8.15198 8.37865 9.34485 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.022933 B = 0.002004 C = 0.001952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1220.628867 B =13968.494173 C =14338.655872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.101 4.101 3 H 0.048 0.952 4 C 0.128 3.872 5 N -0.604 5.604 6 C 0.510 3.490 7 O -0.579 6.579 8 C 0.048 3.952 9 O -0.393 6.393 10 C 0.148 3.852 11 C 0.177 3.823 12 N -0.521 5.521 13 C -0.063 4.063 14 C -0.038 4.038 15 N -0.450 5.450 16 C 0.061 3.939 17 C 0.112 3.888 18 C -0.145 4.145 19 C 0.178 3.822 20 H 0.052 0.948 21 N -0.733 5.733 22 C -0.227 4.227 23 H 0.081 0.919 24 C -0.081 4.081 25 N -0.972 5.972 26 Si 0.969 3.031 27 H -0.292 1.292 28 H -0.303 1.303 29 H -0.265 1.265 30 H 0.060 0.940 31 H 0.039 0.961 32 H 0.061 0.939 33 H 0.088 0.912 34 H 0.077 0.923 35 H 0.126 0.874 36 H 0.104 0.896 37 H 0.106 0.894 38 H 0.088 0.912 39 H 0.184 0.816 40 H 0.215 0.785 41 H 0.102 0.898 42 H 0.105 0.895 43 H 0.090 0.910 44 H 0.114 0.886 45 H 0.094 0.906 46 H 0.043 0.957 47 H 0.072 0.928 48 H 0.369 0.631 49 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.720 -11.519 21.601 30.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.121 4.121 3 H 0.067 0.933 4 C 0.005 3.995 5 N -0.337 5.337 6 C 0.299 3.701 7 O -0.458 6.458 8 C -0.031 4.031 9 O -0.311 6.311 10 C 0.070 3.930 11 C -0.085 4.085 12 N -0.242 5.242 13 C -0.211 4.211 14 C -0.173 4.173 15 N -0.133 5.133 16 C -0.080 4.080 17 C -0.010 4.010 18 C -0.186 4.186 19 C 0.069 3.931 20 H 0.070 0.930 21 N -0.372 5.372 22 C -0.359 4.359 23 H 0.099 0.901 24 C -0.273 4.273 25 N -0.624 5.624 26 Si 0.799 3.201 27 H -0.219 1.219 28 H -0.230 1.230 29 H -0.190 1.190 30 H 0.079 0.921 31 H 0.059 0.941 32 H 0.080 0.920 33 H 0.106 0.894 34 H 0.095 0.905 35 H 0.144 0.856 36 H 0.122 0.878 37 H 0.124 0.876 38 H 0.106 0.894 39 H 0.201 0.799 40 H 0.231 0.769 41 H 0.120 0.880 42 H 0.124 0.876 43 H 0.109 0.891 44 H 0.132 0.868 45 H 0.113 0.887 46 H 0.062 0.938 47 H 0.091 0.909 48 H 0.201 0.799 49 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 18.267 -10.932 21.566 30.303 hybrid contribution -0.466 0.103 -0.791 0.924 sum 17.801 -10.829 20.775 29.423 Atomic orbital electron populations 1.21577 0.94108 1.02098 1.01040 1.21612 0.96599 0.99000 0.94864 0.93338 1.21568 0.79103 1.01370 0.97425 1.48176 1.06805 1.60377 1.18382 1.20858 0.90058 0.77035 0.82181 1.90694 1.76252 1.45819 1.33081 1.22428 0.88910 1.02531 0.89190 1.88037 1.19595 1.83910 1.39566 1.20718 0.80059 1.01260 0.90916 1.23014 1.06178 0.88272 0.91034 1.70142 1.17633 1.16621 1.19828 1.22782 1.07854 0.99633 0.90860 1.23358 1.06739 0.89453 0.97744 1.45568 1.46951 1.10869 1.09880 1.22425 1.04534 0.75314 1.05708 1.22017 0.99306 0.97872 0.81793 1.22502 0.98067 1.00193 0.97851 1.20463 0.92079 0.95372 0.85166 0.93023 1.42625 1.76908 1.10858 1.06807 1.19613 1.33453 0.94467 0.88335 0.90117 1.25522 1.03397 0.96918 1.01418 1.69835 1.52164 1.11183 1.29203 0.85201 0.77820 0.77482 0.79640 1.21914 1.22968 1.18994 0.92056 0.94143 0.92039 0.89398 0.90492 0.85616 0.87812 0.87598 0.89351 0.79857 0.76876 0.87950 0.87591 0.89118 0.86823 0.88735 0.93788 0.90929 0.79947 0.94398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.24 9.02 71.98 0.65 -3.59 16 2 C -0.10 -3.26 2.46 -10.71 -0.03 -3.28 16 3 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 4 C 0.13 3.50 5.72 86.36 0.49 3.99 16 5 N -0.60 -14.83 2.97 -818.91 -2.44 -17.27 16 6 C 0.51 13.85 7.78 87.66 0.68 14.53 16 7 O -0.58 -21.69 15.91 16.01 0.25 -21.44 16 8 C 0.05 0.86 4.76 71.24 0.34 1.20 16 9 O -0.39 -9.39 9.86 -129.94 -1.28 -10.67 16 10 C 0.15 2.51 6.02 71.24 0.43 2.94 16 11 C 0.18 3.96 7.53 138.13 1.04 5.00 16 12 N -0.52 -14.46 11.25 -188.13 -2.12 -16.58 16 13 C -0.06 -1.35 11.87 83.52 0.99 -0.35 16 14 C -0.04 -0.59 11.58 83.09 0.96 0.38 16 15 N -0.45 -7.26 3.15 -537.61 -1.69 -8.95 16 16 C 0.06 0.40 10.79 127.77 1.38 1.78 16 17 C 0.11 2.17 6.34 86.36 0.55 2.72 16 18 C -0.15 -4.27 5.67 30.68 0.17 -4.10 16 19 C 0.18 6.32 2.19 45.03 0.10 6.42 16 20 H 0.05 1.82 8.08 -2.38 -0.02 1.80 16 21 N -0.73 -34.88 4.41 -322.77 -1.42 -36.30 16 22 C -0.23 -11.86 9.93 84.03 0.83 -11.02 16 23 H 0.08 3.97 7.83 -2.91 -0.02 3.95 16 24 C -0.08 -4.51 5.50 84.86 0.47 -4.04 16 25 N -0.97 -58.98 13.06 21.65 0.28 -58.70 16 26 Si 0.97 45.00 29.55 68.60 2.03 47.03 16 27 H -0.29 -13.46 7.11 99.48 0.71 -12.75 16 28 H -0.30 -14.45 7.11 99.48 0.71 -13.74 16 29 H -0.27 -11.41 7.11 99.48 0.71 -10.71 16 30 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 31 H 0.04 1.58 7.36 -2.38 -0.02 1.57 16 32 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 33 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 34 H 0.08 2.33 7.00 -2.39 -0.02 2.31 16 35 H 0.13 1.09 7.94 -2.39 -0.02 1.07 16 36 H 0.10 1.49 7.69 -2.39 -0.02 1.47 16 37 H 0.11 0.87 7.71 -2.39 -0.02 0.85 16 38 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 39 H 0.18 3.01 8.06 -2.91 -0.02 2.98 16 40 H 0.21 1.34 8.06 -2.91 -0.02 1.32 16 41 H 0.10 0.20 8.14 -2.38 -0.02 0.18 16 42 H 0.11 0.33 8.14 -2.39 -0.02 0.31 16 43 H 0.09 0.62 7.66 -2.39 -0.02 0.61 16 44 H 0.11 1.38 5.93 -2.39 -0.01 1.36 16 45 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 46 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 47 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 48 H 0.37 19.63 7.50 -92.70 -0.70 18.94 16 49 H 0.25 14.71 8.31 -92.70 -0.77 13.94 16 Total: -1.00 -83.99 399.20 2.92 -81.07 By element: Atomic # 1 Polarization: 29.00 SS G_CDS: 0.25 Total: 29.25 kcal Atomic # 6 Polarization: 3.50 SS G_CDS: 9.06 Total: 12.56 kcal Atomic # 7 Polarization: -130.41 SS G_CDS: -7.39 Total: -137.80 kcal Atomic # 8 Polarization: -31.08 SS G_CDS: -1.03 Total: -32.11 kcal Atomic # 14 Polarization: 45.00 SS G_CDS: 2.03 Total: 47.03 kcal Total: -83.99 2.92 -81.07 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001496354724.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.201 kcal (2) G-P(sol) polarization free energy of solvation -83.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.071 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds