Wall clock time and date at job start Tue Mar 31 2020 19:56:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.47088 * 2 1 4 4 C 1.53001 * 109.47190 * 119.99870 * 2 1 3 5 5 H 1.09002 * 109.47200 * 60.00017 * 4 2 1 6 6 C 1.52994 * 109.47494 * 180.02562 * 4 2 1 7 7 N 1.46494 * 109.47490 * 175.00069 * 6 4 2 8 8 C 1.34779 * 120.00409 * 179.97438 * 7 6 4 9 9 O 1.21282 * 119.99522 * 0.02562 * 8 7 6 10 10 C 1.50701 * 120.00423 * 179.97438 * 8 7 6 11 11 H 1.08999 * 109.46599 * 60.00187 * 10 8 7 12 12 C 1.53001 * 109.46925 * 300.00109 * 10 8 7 13 13 C 1.53001 * 109.47173 * 179.97438 * 10 8 7 14 14 C 1.50697 * 109.46953 * 185.00143 * 13 10 8 15 15 C 1.38241 * 119.97433 * 89.99784 * 14 13 10 16 16 C 1.38205 * 120.02377 * 179.74187 * 15 14 13 17 17 C 1.38455 * 119.97496 * 0.26259 * 16 15 14 18 18 F 1.35097 * 120.02414 * 180.02562 * 17 16 15 19 19 C 1.38464 * 119.95049 * 359.97438 * 17 16 15 20 20 C 1.38201 * 119.97214 * 0.02562 * 19 17 16 21 21 N 1.46501 * 109.46888 * 300.00252 * 4 2 1 22 22 C 1.36941 * 120.00256 * 84.99672 * 21 4 2 23 23 H 1.07998 * 119.99672 * 0.02562 * 22 21 4 24 24 C 1.38814 * 119.99945 * 179.97438 * 22 21 4 25 25 N 1.31621 * 120.00070 * 0.02562 * 24 22 21 26 26 Si 1.86799 * 119.99921 * 180.02562 * 24 22 21 27 27 H 1.48505 * 109.46856 * 60.00046 * 26 24 22 28 28 H 1.48500 * 109.47271 * 180.02562 * 26 24 22 29 29 H 1.48498 * 109.47092 * 300.00614 * 26 24 22 30 30 H 1.08998 * 109.47343 * 299.99857 * 1 2 3 31 31 H 1.09000 * 109.46764 * 60.00214 * 1 2 3 32 32 H 1.09002 * 109.47035 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.47476 * 239.99608 * 2 1 3 34 34 H 1.08997 * 109.46829 * 180.02562 * 3 2 1 35 35 H 1.09000 * 109.46883 * 300.00039 * 3 2 1 36 36 H 1.08998 * 109.46912 * 59.99879 * 3 2 1 37 37 H 1.08999 * 109.47679 * 54.99485 * 6 4 2 38 38 H 1.09001 * 109.46960 * 294.99805 * 6 4 2 39 39 H 0.97005 * 119.99891 * 359.97438 * 7 6 4 40 40 H 1.08999 * 109.47082 * 59.99760 * 12 10 8 41 41 H 1.09002 * 109.46706 * 179.97438 * 12 10 8 42 42 H 1.08994 * 109.47148 * 299.99756 * 12 10 8 43 43 H 1.09002 * 109.47035 * 65.00098 * 13 10 8 44 44 H 1.08994 * 109.46906 * 305.00295 * 13 10 8 45 45 H 1.08002 * 119.99029 * 0.02809 * 15 14 13 46 46 H 1.08004 * 120.00758 * 180.27782 * 16 15 14 47 47 H 1.07994 * 120.01441 * 179.97438 * 19 17 16 48 48 H 1.07996 * 119.98812 * 180.02562 * 20 19 17 49 49 H 0.97006 * 119.99952 * 265.00016 * 21 4 2 50 50 H 0.97002 * 119.99958 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 1.6767 -1.7489 1.2493 6 6 3.5700 -0.7207 1.2497 7 7 4.0582 -1.3044 2.5014 8 6 5.3833 -1.4085 2.7248 9 8 6.1715 -1.0186 1.8895 10 6 5.8856 -2.0085 4.0127 11 1 5.5222 -3.0322 4.1026 12 6 5.3757 -1.1805 5.1940 13 6 7.4156 -2.0092 4.0124 14 6 7.9178 -2.7191 5.2432 15 6 8.1473 -4.0819 5.2091 16 6 8.6129 -4.7332 6.3357 17 6 8.8444 -4.0210 7.5003 18 9 9.3000 -4.6565 8.6020 19 6 8.6095 -2.6569 7.5347 20 6 8.1439 -2.0078 6.4069 21 7 1.5516 -0.0306 2.4454 22 6 0.3100 -0.3209 2.9448 23 1 -0.3090 -1.0594 2.4570 24 6 -0.1525 0.3331 4.0784 25 7 0.6021 1.2327 4.6731 26 14 -1.8459 -0.0635 4.7600 27 1 -1.9081 -1.5016 5.1250 28 1 -2.1008 0.7652 5.9656 29 1 -2.8751 0.2309 3.7308 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.8934 -0.5139 -0.8899 34 1 3.1300 1.4425 -0.0005 35 1 1.6767 1.9563 -0.8900 36 1 1.6766 1.9563 0.8900 37 1 3.9331 0.3031 1.1602 38 1 3.9337 -1.3100 0.4079 39 1 3.4278 -1.6160 3.1696 40 1 4.2857 -1.1804 5.1939 41 1 5.7386 -1.6147 6.1255 42 1 5.7391 -0.1569 5.1039 43 1 7.7794 -0.9817 4.0118 44 1 7.7785 -2.5237 3.1227 45 1 7.9671 -4.6372 4.3005 46 1 8.7964 -5.7971 6.3075 47 1 8.7892 -2.1005 8.4427 48 1 7.9609 -0.9438 6.4334 49 1 2.1078 0.6325 2.8837 50 1 0.2788 1.6900 5.4651 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001496641063.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:56:09 Heat of formation + Delta-G solvation = -72.538297 kcal Electronic energy + Delta-G solvation = -29108.249698 eV Core-core repulsion = 25049.137689 eV Total energy + Delta-G solvation = -4059.112009 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -49.07786 -40.02965 -39.09263 -37.37155 -34.80333 -33.87344 -32.93418 -31.39339 -30.82518 -30.07790 -27.92114 -26.63191 -26.32208 -24.23403 -23.39110 -23.09356 -22.05082 -21.08472 -19.69399 -18.66128 -17.85860 -17.41840 -16.85261 -16.54636 -15.88067 -15.73962 -15.49695 -15.31916 -14.76861 -14.36507 -14.25786 -13.98591 -13.90943 -13.71861 -13.49582 -13.29864 -13.13578 -13.00692 -12.70176 -12.29573 -12.15967 -12.08697 -11.85196 -11.53384 -11.34580 -11.30990 -11.08819 -11.03200 -10.95057 -10.93102 -10.83364 -10.55312 -10.27817 -10.17289 -9.92436 -9.52657 -9.44581 -9.30190 -8.94467 -8.71423 -8.58724 -7.04895 -5.84406 -3.13008 0.91264 1.00448 2.95082 3.30853 3.37486 3.43246 3.44386 3.62185 4.05670 4.48542 4.51529 4.58477 4.68185 4.85715 4.93842 5.05690 5.12666 5.17716 5.36414 5.40522 5.47558 5.51653 5.60154 5.71805 5.72342 5.77205 5.82105 5.86970 5.88695 5.90061 5.93209 6.00834 6.10446 6.15276 6.22152 6.30372 6.32576 6.40003 6.42328 6.55905 6.63698 6.67620 6.69887 6.79025 6.95477 7.04081 7.32345 7.63818 7.95013 8.32913 8.58077 9.45237 9.99920 10.36337 11.37088 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.012363 B = 0.002630 C = 0.002286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2264.216981 B =10642.434587 C =12247.573212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.107 4.107 3 C -0.141 4.141 4 C 0.168 3.832 5 H 0.052 0.948 6 C 0.111 3.889 7 N -0.710 5.710 8 C 0.514 3.486 9 O -0.557 6.557 10 C -0.104 4.104 11 H 0.095 0.905 12 C -0.149 4.149 13 C -0.061 4.061 14 C -0.084 4.084 15 C -0.088 4.088 16 C -0.152 4.152 17 C 0.088 3.912 18 F -0.144 7.144 19 C -0.152 4.152 20 C -0.084 4.084 21 N -0.717 5.717 22 C -0.236 4.236 23 H 0.071 0.929 24 C -0.009 4.009 25 N -0.929 5.929 26 Si 0.901 3.099 27 H -0.287 1.287 28 H -0.292 1.292 29 H -0.287 1.287 30 H 0.088 0.912 31 H 0.030 0.970 32 H 0.039 0.961 33 H 0.048 0.952 34 H 0.044 0.956 35 H 0.037 0.963 36 H 0.068 0.932 37 H 0.068 0.932 38 H 0.060 0.940 39 H 0.410 0.590 40 H 0.071 0.929 41 H 0.065 0.935 42 H 0.061 0.939 43 H 0.081 0.919 44 H 0.082 0.918 45 H 0.133 0.867 46 H 0.133 0.867 47 H 0.134 0.866 48 H 0.135 0.865 49 H 0.385 0.615 50 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.877 -8.444 0.422 16.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.129 4.129 3 C -0.199 4.199 4 C 0.057 3.943 5 H 0.070 0.930 6 C -0.013 4.013 7 N -0.361 5.361 8 C 0.300 3.700 9 O -0.436 6.436 10 C -0.125 4.125 11 H 0.113 0.887 12 C -0.206 4.206 13 C -0.099 4.099 14 C -0.084 4.084 15 C -0.106 4.106 16 C -0.171 4.171 17 C 0.069 3.931 18 F -0.122 7.122 19 C -0.171 4.171 20 C -0.102 4.102 21 N -0.359 5.359 22 C -0.367 4.367 23 H 0.089 0.911 24 C -0.206 4.206 25 N -0.576 5.576 26 Si 0.732 3.268 27 H -0.214 1.214 28 H -0.218 1.218 29 H -0.214 1.214 30 H 0.106 0.894 31 H 0.050 0.950 32 H 0.058 0.942 33 H 0.067 0.933 34 H 0.063 0.937 35 H 0.057 0.943 36 H 0.087 0.913 37 H 0.086 0.914 38 H 0.079 0.921 39 H 0.247 0.753 40 H 0.090 0.910 41 H 0.084 0.916 42 H 0.080 0.920 43 H 0.100 0.900 44 H 0.101 0.899 45 H 0.150 0.850 46 H 0.151 0.849 47 H 0.152 0.848 48 H 0.153 0.847 49 H 0.220 0.780 50 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 14.258 -8.244 -0.072 16.470 hybrid contribution -1.142 -0.217 1.081 1.588 sum 13.116 -8.461 1.009 15.641 Atomic orbital electron populations 1.21835 0.95036 1.00808 1.02078 1.21619 0.96768 0.96579 0.97956 1.21793 0.99668 0.96779 1.01634 1.20541 0.89425 0.95883 0.88453 0.92983 1.21744 0.95624 0.98470 0.85481 1.46005 1.06746 1.62115 1.21243 1.20502 0.82578 0.78830 0.88098 1.90656 1.55595 1.50085 1.47261 1.21247 0.95932 1.01339 0.93976 0.88701 1.21876 1.02533 0.99764 0.96441 1.20414 0.93355 1.01440 0.94663 1.20016 0.98841 0.93815 0.95761 1.20962 0.97774 0.93933 0.97956 1.21131 1.02907 1.00787 0.92301 1.17738 1.00734 0.91076 0.83531 1.91489 1.86661 1.82265 1.51819 1.21162 1.02718 0.92820 1.00371 1.21023 0.97204 1.00531 0.91482 1.42407 1.17969 1.47468 1.28045 1.19138 0.92849 1.18031 1.06694 0.91082 1.24695 0.98164 0.99229 0.98494 1.69643 1.36825 1.28941 1.22234 0.86369 0.84566 0.77459 0.78367 1.21369 1.21838 1.21350 0.89365 0.95045 0.94171 0.93319 0.93667 0.94344 0.91259 0.91395 0.92143 0.75339 0.90964 0.91571 0.91975 0.89989 0.89943 0.84952 0.84890 0.84803 0.84745 0.78041 0.93491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.46 8.26 37.16 0.31 -2.16 16 2 C -0.11 -1.78 2.80 -90.62 -0.25 -2.04 16 3 C -0.14 -2.35 8.69 37.16 0.32 -2.03 16 4 C 0.17 2.95 2.35 -67.93 -0.16 2.79 16 5 H 0.05 0.94 8.08 -51.93 -0.42 0.52 16 6 C 0.11 1.81 5.01 -4.05 -0.02 1.79 16 7 N -0.71 -11.10 5.28 -60.30 -0.32 -11.42 16 8 C 0.51 7.83 7.15 -10.98 -0.08 7.75 16 9 O -0.56 -10.10 15.92 5.56 0.09 -10.01 16 10 C -0.10 -1.22 2.71 -91.77 -0.25 -1.47 16 11 H 0.09 1.01 8.14 -51.93 -0.42 0.58 16 12 C -0.15 -1.78 8.65 37.16 0.32 -1.46 16 13 C -0.06 -0.66 4.19 -27.88 -0.12 -0.77 16 14 C -0.08 -0.82 4.72 -104.62 -0.49 -1.31 16 15 C -0.09 -0.79 9.70 -39.59 -0.38 -1.18 16 16 C -0.15 -1.40 10.03 -39.51 -0.40 -1.79 16 17 C 0.09 0.90 7.30 -39.42 -0.29 0.62 16 18 F -0.14 -1.58 17.27 2.25 0.04 -1.55 16 19 C -0.15 -1.43 10.03 -39.51 -0.40 -1.83 16 20 C -0.08 -0.79 7.94 -39.59 -0.31 -1.10 16 21 N -0.72 -15.33 3.67 -53.42 -0.20 -15.52 16 22 C -0.24 -5.71 7.57 -15.06 -0.11 -5.83 16 23 H 0.07 1.70 7.40 -52.49 -0.39 1.31 16 24 C -0.01 -0.24 5.50 -17.43 -0.10 -0.34 16 25 N -0.93 -25.63 13.06 55.49 0.72 -24.91 16 26 Si 0.90 20.96 29.55 -169.99 -5.02 15.93 16 27 H -0.29 -6.61 7.11 56.52 0.40 -6.20 16 28 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 29 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 30 H 0.09 1.84 6.01 -51.93 -0.31 1.52 16 31 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.04 0.71 6.32 -51.93 -0.33 0.38 16 35 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.07 1.34 7.60 -51.93 -0.39 0.94 16 37 H 0.07 1.19 6.17 -51.93 -0.32 0.87 16 38 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 39 H 0.41 6.51 7.56 -40.82 -0.31 6.20 16 40 H 0.07 0.98 7.56 -51.93 -0.39 0.59 16 41 H 0.07 0.70 6.26 -51.93 -0.32 0.38 16 42 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 43 H 0.08 0.93 8.09 -51.93 -0.42 0.51 16 44 H 0.08 0.91 7.90 -51.93 -0.41 0.50 16 45 H 0.13 0.97 8.06 -52.49 -0.42 0.55 16 46 H 0.13 0.98 8.06 -52.48 -0.42 0.56 16 47 H 0.13 1.05 8.06 -52.49 -0.42 0.62 16 48 H 0.13 1.10 8.03 -52.49 -0.42 0.67 16 49 H 0.39 9.08 7.80 -40.82 -0.32 8.76 16 50 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 LS Contribution 402.93 15.07 6.07 6.07 Total: -1.00 -27.87 402.93 -9.15 -37.01 By element: Atomic # 1 Polarization: 22.85 SS G_CDS: -8.12 Total: 14.73 kcal Atomic # 6 Polarization: -7.94 SS G_CDS: -2.41 Total: -10.35 kcal Atomic # 7 Polarization: -52.06 SS G_CDS: 0.21 Total: -51.85 kcal Atomic # 8 Polarization: -10.10 SS G_CDS: 0.09 Total: -10.01 kcal Atomic # 9 Polarization: -1.58 SS G_CDS: 0.04 Total: -1.55 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -27.87 -9.15 -37.01 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001496641063.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.525 kcal (2) G-P(sol) polarization free energy of solvation -27.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.014 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds