Wall clock time and date at job start Tue Mar 31 2020 19:56:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.47088 * 2 1 4 4 C 1.53001 * 109.47190 * 119.99870 * 2 1 3 5 5 H 1.09002 * 109.47200 * 60.00017 * 4 2 1 6 6 C 1.52994 * 109.47494 * 180.02562 * 4 2 1 7 7 N 1.46494 * 109.47490 * 175.00069 * 6 4 2 8 8 C 1.34779 * 120.00409 * 179.97438 * 7 6 4 9 9 O 1.21282 * 119.99522 * 0.02562 * 8 7 6 10 10 C 1.50701 * 120.00423 * 179.97438 * 8 7 6 11 11 H 1.08999 * 109.46599 * 60.00187 * 10 8 7 12 12 C 1.53001 * 109.46925 * 300.00109 * 10 8 7 13 13 C 1.53001 * 109.47173 * 179.97438 * 10 8 7 14 14 C 1.50697 * 109.46953 * 185.00143 * 13 10 8 15 15 C 1.38241 * 119.97433 * 89.99784 * 14 13 10 16 16 C 1.38205 * 120.02377 * 179.74187 * 15 14 13 17 17 C 1.38455 * 119.97496 * 0.26259 * 16 15 14 18 18 F 1.35097 * 120.02414 * 180.02562 * 17 16 15 19 19 C 1.38464 * 119.95049 * 359.97438 * 17 16 15 20 20 C 1.38201 * 119.97214 * 0.02562 * 19 17 16 21 21 N 1.46501 * 109.46888 * 300.00252 * 4 2 1 22 22 C 1.36941 * 120.00256 * 84.99672 * 21 4 2 23 23 H 1.07998 * 119.99672 * 0.02562 * 22 21 4 24 24 C 1.38814 * 119.99945 * 179.97438 * 22 21 4 25 25 N 1.31621 * 120.00070 * 0.02562 * 24 22 21 26 26 Si 1.86799 * 119.99921 * 180.02562 * 24 22 21 27 27 H 1.48505 * 109.46856 * 60.00046 * 26 24 22 28 28 H 1.48500 * 109.47271 * 180.02562 * 26 24 22 29 29 H 1.48498 * 109.47092 * 300.00614 * 26 24 22 30 30 H 1.08998 * 109.47343 * 299.99857 * 1 2 3 31 31 H 1.09000 * 109.46764 * 60.00214 * 1 2 3 32 32 H 1.09002 * 109.47035 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.47476 * 239.99608 * 2 1 3 34 34 H 1.08997 * 109.46829 * 180.02562 * 3 2 1 35 35 H 1.09000 * 109.46883 * 300.00039 * 3 2 1 36 36 H 1.08998 * 109.46912 * 59.99879 * 3 2 1 37 37 H 1.08999 * 109.47679 * 54.99485 * 6 4 2 38 38 H 1.09001 * 109.46960 * 294.99805 * 6 4 2 39 39 H 0.97005 * 119.99891 * 359.97438 * 7 6 4 40 40 H 1.08999 * 109.47082 * 59.99760 * 12 10 8 41 41 H 1.09002 * 109.46706 * 179.97438 * 12 10 8 42 42 H 1.08994 * 109.47148 * 299.99756 * 12 10 8 43 43 H 1.09002 * 109.47035 * 65.00098 * 13 10 8 44 44 H 1.08994 * 109.46906 * 305.00295 * 13 10 8 45 45 H 1.08002 * 119.99029 * 0.02809 * 15 14 13 46 46 H 1.08004 * 120.00758 * 180.27782 * 16 15 14 47 47 H 1.07994 * 120.01441 * 179.97438 * 19 17 16 48 48 H 1.07996 * 119.98812 * 180.02562 * 20 19 17 49 49 H 0.97006 * 119.99952 * 265.00016 * 21 4 2 50 50 H 0.97002 * 119.99958 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 1.6767 -1.7489 1.2493 6 6 3.5700 -0.7207 1.2497 7 7 4.0582 -1.3044 2.5014 8 6 5.3833 -1.4085 2.7248 9 8 6.1715 -1.0186 1.8895 10 6 5.8856 -2.0085 4.0127 11 1 5.5222 -3.0322 4.1026 12 6 5.3757 -1.1805 5.1940 13 6 7.4156 -2.0092 4.0124 14 6 7.9178 -2.7191 5.2432 15 6 8.1473 -4.0819 5.2091 16 6 8.6129 -4.7332 6.3357 17 6 8.8444 -4.0210 7.5003 18 9 9.3000 -4.6565 8.6020 19 6 8.6095 -2.6569 7.5347 20 6 8.1439 -2.0078 6.4069 21 7 1.5516 -0.0306 2.4454 22 6 0.3100 -0.3209 2.9448 23 1 -0.3090 -1.0594 2.4570 24 6 -0.1525 0.3331 4.0784 25 7 0.6021 1.2327 4.6731 26 14 -1.8459 -0.0635 4.7600 27 1 -1.9081 -1.5016 5.1250 28 1 -2.1008 0.7652 5.9656 29 1 -2.8751 0.2309 3.7308 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.8934 -0.5139 -0.8899 34 1 3.1300 1.4425 -0.0005 35 1 1.6767 1.9563 -0.8900 36 1 1.6766 1.9563 0.8900 37 1 3.9331 0.3031 1.1602 38 1 3.9337 -1.3100 0.4079 39 1 3.4278 -1.6160 3.1696 40 1 4.2857 -1.1804 5.1939 41 1 5.7386 -1.6147 6.1255 42 1 5.7391 -0.1569 5.1039 43 1 7.7794 -0.9817 4.0118 44 1 7.7785 -2.5237 3.1227 45 1 7.9671 -4.6372 4.3005 46 1 8.7964 -5.7971 6.3075 47 1 8.7892 -2.1005 8.4427 48 1 7.9609 -0.9438 6.4334 49 1 2.1078 0.6325 2.8837 50 1 0.2788 1.6900 5.4651 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001496641063.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:56:08 Heat of formation + Delta-G solvation = -86.311073 kcal Electronic energy + Delta-G solvation = -29108.846930 eV Core-core repulsion = 25049.137689 eV Total energy + Delta-G solvation = -4059.709241 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -49.87174 -41.11064 -40.02102 -38.81695 -35.78359 -35.23621 -34.69349 -32.10880 -32.01163 -31.47413 -29.37118 -27.73274 -27.51481 -25.76277 -24.68674 -23.91474 -23.26660 -22.04104 -20.90016 -20.05572 -19.17946 -18.60550 -18.06269 -17.33931 -17.10975 -16.81878 -16.56488 -16.25696 -16.19668 -15.89059 -15.40951 -15.15518 -14.93222 -14.85007 -14.60975 -14.40065 -14.34659 -14.28579 -13.77465 -13.73181 -13.28518 -13.07785 -13.00350 -12.87801 -12.75618 -12.63970 -12.45736 -12.37337 -12.13755 -12.11788 -12.02258 -11.93133 -11.85428 -11.78429 -11.34009 -11.16549 -10.84761 -10.64205 -10.01514 -9.90237 -9.48626 -8.89050 -7.82388 -5.07695 0.16188 0.31087 1.52332 1.53886 1.58292 1.72679 2.33946 2.63086 2.66685 3.32885 3.50850 3.66660 3.78186 3.92505 3.94443 3.98954 4.00364 4.04994 4.18481 4.30396 4.37209 4.38220 4.40038 4.45579 4.51235 4.72429 4.78265 4.82675 4.88826 4.90572 4.97018 5.01483 5.04446 5.09071 5.15812 5.19859 5.22431 5.25251 5.30712 5.32843 5.33940 5.35757 5.60494 5.62446 5.63846 5.68434 5.84648 5.96299 6.37554 6.68143 7.33113 7.46543 8.18657 8.44135 9.39808 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.012363 B = 0.002630 C = 0.002286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2264.216981 B =10642.434587 C =12247.573212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.105 4.105 3 C -0.135 4.135 4 C 0.169 3.831 5 H 0.056 0.944 6 C 0.119 3.881 7 N -0.711 5.711 8 C 0.513 3.487 9 O -0.586 6.586 10 C -0.094 4.094 11 H 0.113 0.887 12 C -0.142 4.142 13 C -0.052 4.052 14 C -0.089 4.089 15 C -0.088 4.088 16 C -0.154 4.154 17 C 0.071 3.929 18 F -0.152 7.152 19 C -0.156 4.156 20 C -0.089 4.089 21 N -0.719 5.719 22 C -0.211 4.211 23 H 0.076 0.924 24 C -0.068 4.068 25 N -0.963 5.963 26 Si 0.952 3.048 27 H -0.281 1.281 28 H -0.305 1.305 29 H -0.286 1.286 30 H 0.050 0.950 31 H 0.049 0.951 32 H 0.045 0.955 33 H 0.078 0.922 34 H 0.052 0.948 35 H 0.054 0.946 36 H 0.035 0.965 37 H 0.055 0.945 38 H 0.075 0.925 39 H 0.409 0.591 40 H 0.053 0.947 41 H 0.082 0.918 42 H 0.053 0.947 43 H 0.073 0.927 44 H 0.081 0.919 45 H 0.151 0.849 46 H 0.150 0.850 47 H 0.146 0.854 48 H 0.144 0.856 49 H 0.374 0.626 50 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.243 -10.016 -0.668 17.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.127 4.127 3 C -0.192 4.192 4 C 0.060 3.940 5 H 0.074 0.926 6 C -0.005 4.005 7 N -0.361 5.361 8 C 0.300 3.700 9 O -0.467 6.467 10 C -0.115 4.115 11 H 0.131 0.869 12 C -0.199 4.199 13 C -0.090 4.090 14 C -0.089 4.089 15 C -0.106 4.106 16 C -0.172 4.172 17 C 0.052 3.948 18 F -0.131 7.131 19 C -0.175 4.175 20 C -0.107 4.107 21 N -0.359 5.359 22 C -0.343 4.343 23 H 0.094 0.906 24 C -0.261 4.261 25 N -0.615 5.615 26 Si 0.784 3.216 27 H -0.207 1.207 28 H -0.232 1.232 29 H -0.213 1.213 30 H 0.070 0.930 31 H 0.068 0.932 32 H 0.064 0.936 33 H 0.096 0.904 34 H 0.071 0.929 35 H 0.073 0.927 36 H 0.054 0.946 37 H 0.073 0.927 38 H 0.093 0.907 39 H 0.246 0.754 40 H 0.072 0.928 41 H 0.100 0.900 42 H 0.073 0.927 43 H 0.092 0.908 44 H 0.100 0.900 45 H 0.168 0.832 46 H 0.168 0.832 47 H 0.164 0.836 48 H 0.161 0.839 49 H 0.206 0.794 50 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 14.617 -9.855 -1.199 17.670 hybrid contribution -1.220 0.244 1.309 1.805 sum 13.398 -9.610 0.110 16.489 Atomic orbital electron populations 1.21750 0.95594 1.00852 1.01139 1.21591 0.96195 0.96596 0.98285 1.21710 1.00102 0.96639 1.00751 1.20677 0.90309 0.95550 0.87457 0.92648 1.21615 0.94422 0.98127 0.86380 1.46034 1.07096 1.61989 1.21019 1.21062 0.81997 0.78121 0.88800 1.90641 1.56120 1.51383 1.48539 1.21232 0.96718 1.01809 0.91784 0.86886 1.21808 1.01237 0.99583 0.97305 1.20296 0.92319 1.01174 0.95230 1.19966 0.99398 0.94207 0.95324 1.21170 0.97154 0.93714 0.98583 1.21349 1.02309 1.01699 0.91864 1.18005 1.01456 0.91589 0.83763 1.91468 1.86873 1.82431 1.52280 1.21333 1.02435 0.92771 1.00939 1.21159 0.97110 1.01065 0.91370 1.42464 1.17006 1.47319 1.29135 1.19389 0.93331 1.16212 1.05373 0.90580 1.25248 1.00790 1.00263 0.99750 1.69781 1.38125 1.30794 1.22755 0.85525 0.81779 0.77129 0.77167 1.20708 1.23247 1.21289 0.93048 0.93219 0.93571 0.90404 0.92915 0.92667 0.94624 0.92675 0.90718 0.75419 0.92782 0.89965 0.92745 0.90798 0.90031 0.83173 0.83238 0.83609 0.83874 0.79414 0.94599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.52 8.26 71.98 0.59 -3.92 16 2 C -0.11 -3.27 2.80 -10.79 -0.03 -3.30 16 3 C -0.13 -4.30 8.69 71.98 0.63 -3.67 16 4 C 0.17 5.71 2.35 44.99 0.11 5.82 16 5 H 0.06 1.87 8.08 -2.39 -0.02 1.85 16 6 C 0.12 3.73 5.01 86.38 0.43 4.16 16 7 N -0.71 -21.62 5.28 -463.08 -2.45 -24.06 16 8 C 0.51 15.15 7.15 87.66 0.63 15.78 16 9 O -0.59 -20.76 15.92 -3.04 -0.05 -20.81 16 10 C -0.09 -2.10 2.71 -11.54 -0.03 -2.14 16 11 H 0.11 2.15 8.14 -2.39 -0.02 2.13 16 12 C -0.14 -3.29 8.65 71.98 0.62 -2.67 16 13 C -0.05 -1.06 4.19 29.85 0.12 -0.93 16 14 C -0.09 -1.57 4.72 -19.86 -0.09 -1.66 16 15 C -0.09 -1.40 9.70 22.26 0.22 -1.18 16 16 C -0.15 -2.53 10.03 22.31 0.22 -2.31 16 17 C 0.07 1.36 7.30 22.38 0.16 1.52 16 18 F -0.15 -3.22 17.27 44.97 0.78 -2.44 16 19 C -0.16 -2.75 10.03 22.31 0.22 -2.52 16 20 C -0.09 -1.54 7.94 22.26 0.18 -1.36 16 21 N -0.72 -30.65 3.67 -322.94 -1.19 -31.83 16 22 C -0.21 -10.15 7.57 84.03 0.64 -9.51 16 23 H 0.08 3.55 7.40 -2.91 -0.02 3.53 16 24 C -0.07 -3.56 5.50 84.86 0.47 -3.09 16 25 N -0.96 -54.43 13.06 21.65 0.28 -54.15 16 26 Si 0.95 43.46 29.55 68.60 2.03 45.49 16 27 H -0.28 -12.35 7.11 99.48 0.71 -11.65 16 28 H -0.31 -14.50 7.11 99.48 0.71 -13.79 16 29 H -0.29 -12.84 7.11 99.48 0.71 -12.14 16 30 H 0.05 2.09 6.01 -2.39 -0.01 2.08 16 31 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 32 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 33 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 34 H 0.05 1.59 6.32 -2.39 -0.02 1.57 16 35 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 36 H 0.03 1.37 7.60 -2.39 -0.02 1.35 16 37 H 0.06 1.89 6.17 -2.39 -0.01 1.87 16 38 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 39 H 0.41 12.72 7.56 -92.70 -0.70 12.02 16 40 H 0.05 1.46 7.56 -2.39 -0.02 1.44 16 41 H 0.08 1.64 6.26 -2.39 -0.01 1.63 16 42 H 0.05 1.33 8.14 -2.39 -0.02 1.32 16 43 H 0.07 1.61 8.09 -2.39 -0.02 1.59 16 44 H 0.08 1.67 7.90 -2.39 -0.02 1.65 16 45 H 0.15 1.80 8.06 -2.91 -0.02 1.77 16 46 H 0.15 1.89 8.06 -2.91 -0.02 1.86 16 47 H 0.15 2.11 8.06 -2.91 -0.02 2.08 16 48 H 0.14 2.15 8.03 -2.91 -0.02 2.13 16 49 H 0.37 17.88 7.80 -92.70 -0.72 17.16 16 50 H 0.25 13.86 8.31 -92.71 -0.77 13.09 16 Total: -1.00 -59.71 402.93 4.01 -55.70 By element: Atomic # 1 Polarization: 43.58 SS G_CDS: -0.48 Total: 43.10 kcal Atomic # 6 Polarization: -16.08 SS G_CDS: 5.08 Total: -10.99 kcal Atomic # 7 Polarization: -106.70 SS G_CDS: -3.35 Total: -110.05 kcal Atomic # 8 Polarization: -20.76 SS G_CDS: -0.05 Total: -20.81 kcal Atomic # 9 Polarization: -3.22 SS G_CDS: 0.78 Total: -2.44 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 2.03 Total: 45.49 kcal Total: -59.71 4.01 -55.70 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001496641063.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.616 kcal (2) G-P(sol) polarization free energy of solvation -59.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.695 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds