Wall clock time and date at job start Tue Mar 31 2020 19:56:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.46887 * 2 1 4 4 C 1.52998 * 109.47415 * 119.99683 * 2 1 3 5 5 H 1.08997 * 109.46983 * 60.00792 * 4 2 1 6 6 C 1.53003 * 109.46875 * 180.02562 * 4 2 1 7 7 N 1.46504 * 109.46698 * 175.00414 * 6 4 2 8 8 C 1.34784 * 119.99759 * 180.02562 * 7 6 4 9 9 O 1.21279 * 119.99838 * 359.97438 * 8 7 6 10 10 C 1.50694 * 119.99858 * 179.97438 * 8 7 6 11 11 H 1.09002 * 109.47313 * 300.00406 * 10 8 7 12 12 C 1.53006 * 109.47406 * 59.99954 * 10 8 7 13 13 C 1.52997 * 109.47274 * 180.02562 * 10 8 7 14 14 C 1.50696 * 109.47594 * 174.99820 * 13 10 8 15 15 C 1.38249 * 119.97160 * 89.99515 * 14 13 10 16 16 C 1.38196 * 120.02483 * 179.97438 * 15 14 13 17 17 C 1.38458 * 119.97492 * 0.02940 * 16 15 14 18 18 F 1.35104 * 120.02786 * 179.97438 * 17 16 15 19 19 C 1.38465 * 119.94675 * 0.24873 * 17 16 15 20 20 C 1.38197 * 119.97511 * 359.47283 * 19 17 16 21 21 N 1.46495 * 109.47501 * 300.00587 * 4 2 1 22 22 C 1.36931 * 120.00028 * 84.99417 * 21 4 2 23 23 H 1.07998 * 120.00099 * 0.02562 * 22 21 4 24 24 C 1.38812 * 120.00287 * 180.02562 * 22 21 4 25 25 N 1.31619 * 119.99596 * 0.02562 * 24 22 21 26 26 Si 1.86793 * 120.00614 * 180.02562 * 24 22 21 27 27 H 1.48503 * 109.46812 * 359.97438 * 26 24 22 28 28 H 1.48498 * 109.47410 * 120.00127 * 26 24 22 29 29 H 1.48501 * 109.47336 * 240.00297 * 26 24 22 30 30 H 1.08993 * 109.47448 * 60.00224 * 1 2 3 31 31 H 1.09010 * 109.46671 * 179.97438 * 1 2 3 32 32 H 1.08995 * 109.47072 * 299.99206 * 1 2 3 33 33 H 1.09000 * 109.47501 * 240.00942 * 2 1 3 34 34 H 1.09000 * 109.47557 * 180.02562 * 3 2 1 35 35 H 1.09004 * 109.47271 * 300.00322 * 3 2 1 36 36 H 1.09003 * 109.46826 * 59.99678 * 3 2 1 37 37 H 1.09000 * 109.47158 * 55.00314 * 6 4 2 38 38 H 1.09000 * 109.47248 * 294.99772 * 6 4 2 39 39 H 0.96993 * 120.00100 * 0.02562 * 7 6 4 40 40 H 1.09003 * 109.46612 * 300.00141 * 12 10 8 41 41 H 1.08997 * 109.46862 * 59.99644 * 12 10 8 42 42 H 1.08992 * 109.47534 * 180.02562 * 12 10 8 43 43 H 1.09004 * 109.47031 * 54.99667 * 13 10 8 44 44 H 1.09007 * 109.47042 * 294.99976 * 13 10 8 45 45 H 1.08001 * 119.98900 * 359.97438 * 15 14 13 46 46 H 1.07996 * 120.01603 * 180.02562 * 16 15 14 47 47 H 1.08007 * 120.01049 * 179.72700 * 19 17 16 48 48 H 1.07994 * 119.98812 * 180.27364 * 20 19 17 49 49 H 0.97003 * 119.99851 * 264.99883 * 21 4 2 50 50 H 0.97005 * 120.00532 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 1.6768 -1.7488 1.2492 6 6 3.5701 -0.7205 1.2494 7 7 4.0584 -1.3043 2.5013 8 6 5.3836 -1.4074 2.7249 9 8 6.1716 -1.0174 1.8896 10 6 5.8859 -2.0073 4.0128 11 1 5.5218 -1.4181 4.8544 12 6 5.3768 -3.4447 4.1386 13 6 7.4158 -2.0057 4.0136 14 6 7.9181 -2.4911 5.3489 15 6 8.1496 -3.8389 5.5513 16 6 8.6107 -4.2852 6.7753 17 6 8.8402 -3.3819 7.7992 18 9 9.2905 -3.8171 8.9964 19 6 8.6025 -2.0329 7.5971 20 6 8.1469 -1.5882 6.3705 21 7 1.5517 -0.0307 2.4454 22 6 0.3102 -0.3211 2.9447 23 1 -0.3088 -1.0595 2.4570 24 6 -0.1528 0.3335 4.0778 25 7 0.6014 1.2338 4.6720 26 14 -1.8461 -0.0632 4.7595 27 1 -2.4887 -1.1020 3.9150 28 1 -1.7144 -0.5668 6.1502 29 1 -2.6817 1.1644 4.7547 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0278 -0.0005 32 1 -0.3633 0.5137 0.8900 33 1 1.8934 -0.5137 -0.8900 34 1 3.1299 1.4427 -0.0005 35 1 1.6765 1.9564 -0.8900 36 1 1.6765 1.9564 0.8900 37 1 3.9330 0.3034 1.1601 38 1 3.9338 -1.3098 0.4076 39 1 3.4281 -1.6166 3.1691 40 1 4.2868 -3.4454 4.1382 41 1 5.7408 -4.0340 3.2970 42 1 5.7398 -3.8785 5.0703 43 1 7.7782 -0.9932 3.8353 44 1 7.7803 -2.6659 3.2265 45 1 7.9700 -4.5434 4.7527 46 1 8.7919 -5.3381 6.9331 47 1 8.7770 -1.3279 8.3965 48 1 7.9656 -0.5356 6.2113 49 1 2.1078 0.6324 2.8837 50 1 0.2778 1.6916 5.4636 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001496641064.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:56:15 Heat of formation + Delta-G solvation = -72.755547 kcal Electronic energy + Delta-G solvation = -29063.230619 eV Core-core repulsion = 25004.109190 eV Total energy + Delta-G solvation = -4059.121429 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -49.07002 -40.03616 -39.09238 -37.37741 -34.82642 -33.87755 -32.93901 -31.39000 -30.84899 -30.08496 -27.92874 -26.69229 -26.32858 -24.25325 -23.38846 -23.09960 -22.06037 -21.09039 -19.69866 -18.67636 -17.85417 -17.38478 -16.91495 -16.54753 -15.88401 -15.73898 -15.45839 -15.29123 -14.89979 -14.36582 -14.22887 -14.06924 -13.80169 -13.71877 -13.45691 -13.40780 -13.18482 -12.97754 -12.73517 -12.29077 -12.21795 -12.20108 -11.83153 -11.54584 -11.35038 -11.32316 -11.16347 -11.04136 -10.96360 -10.96053 -10.82423 -10.55615 -10.28561 -10.12716 -9.91819 -9.53576 -9.45334 -9.30159 -8.95629 -8.71201 -8.58993 -7.05165 -5.84989 -3.13562 0.91624 1.00961 2.95223 3.30833 3.36650 3.43557 3.45506 3.61489 4.06169 4.48774 4.51248 4.58400 4.68647 4.82860 4.90528 5.06025 5.08957 5.15388 5.35533 5.40390 5.47090 5.51360 5.58186 5.66573 5.71742 5.72883 5.77693 5.81749 5.87553 5.89617 5.90939 6.01240 6.09164 6.11063 6.14214 6.22040 6.32286 6.38865 6.41737 6.55697 6.63429 6.67981 6.69678 6.78775 6.95152 7.03881 7.31866 7.64460 7.94742 8.32333 8.57760 9.44774 9.99581 10.35784 11.36770 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.011904 B = 0.002649 C = 0.002301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2351.638234 B =10568.271873 C =12166.249828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.107 4.107 3 C -0.142 4.142 4 C 0.168 3.832 5 H 0.052 0.948 6 C 0.111 3.889 7 N -0.710 5.710 8 C 0.515 3.485 9 O -0.557 6.557 10 C -0.106 4.106 11 H 0.100 0.900 12 C -0.147 4.147 13 C -0.061 4.061 14 C -0.085 4.085 15 C -0.087 4.087 16 C -0.153 4.153 17 C 0.088 3.912 18 F -0.144 7.144 19 C -0.151 4.151 20 C -0.086 4.086 21 N -0.717 5.717 22 C -0.235 4.235 23 H 0.073 0.927 24 C -0.010 4.010 25 N -0.929 5.929 26 Si 0.901 3.099 27 H -0.281 1.281 28 H -0.293 1.293 29 H -0.293 1.293 30 H 0.031 0.969 31 H 0.039 0.961 32 H 0.087 0.913 33 H 0.049 0.951 34 H 0.044 0.956 35 H 0.038 0.962 36 H 0.068 0.932 37 H 0.068 0.932 38 H 0.060 0.940 39 H 0.410 0.590 40 H 0.065 0.935 41 H 0.059 0.941 42 H 0.067 0.933 43 H 0.084 0.916 44 H 0.080 0.920 45 H 0.133 0.867 46 H 0.133 0.867 47 H 0.134 0.866 48 H 0.134 0.866 49 H 0.385 0.615 50 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.922 -8.910 0.175 16.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.129 4.129 3 C -0.199 4.199 4 C 0.057 3.943 5 H 0.070 0.930 6 C -0.013 4.013 7 N -0.361 5.361 8 C 0.301 3.699 9 O -0.436 6.436 10 C -0.127 4.127 11 H 0.118 0.882 12 C -0.204 4.204 13 C -0.098 4.098 14 C -0.085 4.085 15 C -0.105 4.105 16 C -0.172 4.172 17 C 0.069 3.931 18 F -0.122 7.122 19 C -0.170 4.170 20 C -0.104 4.104 21 N -0.359 5.359 22 C -0.366 4.366 23 H 0.091 0.909 24 C -0.207 4.207 25 N -0.577 5.577 26 Si 0.732 3.268 27 H -0.206 1.206 28 H -0.220 1.220 29 H -0.220 1.220 30 H 0.050 0.950 31 H 0.058 0.942 32 H 0.106 0.894 33 H 0.067 0.933 34 H 0.063 0.937 35 H 0.057 0.943 36 H 0.087 0.913 37 H 0.086 0.914 38 H 0.079 0.921 39 H 0.247 0.753 40 H 0.084 0.916 41 H 0.078 0.922 42 H 0.086 0.914 43 H 0.102 0.898 44 H 0.099 0.901 45 H 0.151 0.849 46 H 0.151 0.849 47 H 0.152 0.848 48 H 0.152 0.848 49 H 0.219 0.781 50 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 14.299 -8.719 -0.331 16.751 hybrid contribution -1.135 -0.081 1.156 1.623 sum 13.164 -8.800 0.826 15.855 Atomic orbital electron populations 1.21835 0.95041 1.00813 1.02070 1.21618 0.96771 0.96582 0.97953 1.21796 0.99676 0.96776 1.01640 1.20541 0.89428 0.95886 0.88438 0.92968 1.21749 0.95619 0.98465 0.85486 1.46004 1.06742 1.62068 1.21289 1.20476 0.82579 0.78629 0.88261 1.90656 1.55596 1.50140 1.47189 1.21255 0.96002 0.98542 0.96931 0.88165 1.21861 1.01856 0.94200 1.02527 1.20405 0.93279 1.03170 0.92962 1.20013 0.98860 0.93349 0.96266 1.20972 0.97627 0.95373 0.96487 1.21132 1.02972 0.99880 0.93225 1.17742 1.00768 0.93065 0.81489 1.91492 1.86830 1.90329 1.43576 1.21163 1.02678 0.94016 0.99095 1.21008 0.97385 1.00335 0.91674 1.42424 1.18002 1.47469 1.28043 1.19229 0.92791 1.17904 1.06639 0.90942 1.24704 0.98210 0.99239 0.98531 1.69664 1.36738 1.29003 1.22266 0.86220 0.84399 0.77428 0.78747 1.20594 1.21986 1.21992 0.95036 0.94165 0.89377 0.93306 0.93661 0.94334 0.91261 0.91395 0.92126 0.75339 0.91618 0.92201 0.91360 0.89791 0.90127 0.84917 0.84887 0.84789 0.84772 0.78061 0.93582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.46 8.26 37.16 0.31 -2.15 16 2 C -0.11 -1.78 2.80 -90.62 -0.25 -2.04 16 3 C -0.14 -2.36 8.69 37.16 0.32 -2.03 16 4 C 0.17 2.95 2.35 -67.93 -0.16 2.79 16 5 H 0.05 0.94 8.08 -51.93 -0.42 0.52 16 6 C 0.11 1.81 5.02 -4.04 -0.02 1.79 16 7 N -0.71 -11.10 5.28 -60.29 -0.32 -11.42 16 8 C 0.51 7.84 7.15 -10.99 -0.08 7.76 16 9 O -0.56 -10.09 15.92 5.56 0.09 -10.00 16 10 C -0.11 -1.25 2.71 -91.77 -0.25 -1.50 16 11 H 0.10 1.19 8.14 -51.93 -0.42 0.77 16 12 C -0.15 -1.49 8.66 37.16 0.32 -1.17 16 13 C -0.06 -0.65 4.19 -27.89 -0.12 -0.76 16 14 C -0.08 -0.82 4.71 -104.62 -0.49 -1.32 16 15 C -0.09 -0.76 7.96 -39.59 -0.32 -1.08 16 16 C -0.15 -1.40 10.03 -39.52 -0.40 -1.79 16 17 C 0.09 0.91 7.30 -39.42 -0.29 0.63 16 18 F -0.14 -1.60 17.27 2.25 0.04 -1.56 16 19 C -0.15 -1.46 10.03 -39.51 -0.40 -1.85 16 20 C -0.09 -0.83 9.70 -39.59 -0.38 -1.21 16 21 N -0.72 -15.42 3.67 -53.43 -0.20 -15.61 16 22 C -0.23 -5.69 7.57 -15.06 -0.11 -5.81 16 23 H 0.07 1.74 7.40 -52.49 -0.39 1.36 16 24 C -0.01 -0.27 5.50 -17.43 -0.10 -0.37 16 25 N -0.93 -25.86 13.06 55.49 0.72 -25.14 16 26 Si 0.90 21.02 29.55 -169.99 -5.02 16.00 16 27 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 28 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 29 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 30 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.04 0.68 8.14 -51.92 -0.42 0.25 16 32 H 0.09 1.83 6.01 -51.93 -0.31 1.52 16 33 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.04 0.71 6.32 -51.93 -0.33 0.38 16 35 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.07 1.34 7.60 -51.93 -0.39 0.95 16 37 H 0.07 1.19 6.17 -51.93 -0.32 0.87 16 38 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 39 H 0.41 6.52 7.56 -40.82 -0.31 6.21 16 40 H 0.06 0.70 7.56 -51.93 -0.39 0.31 16 41 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 42 H 0.07 0.63 6.27 -51.93 -0.33 0.30 16 43 H 0.08 0.97 7.90 -51.93 -0.41 0.56 16 44 H 0.08 0.86 8.09 -51.92 -0.42 0.44 16 45 H 0.13 0.95 8.04 -52.49 -0.42 0.52 16 46 H 0.13 0.97 8.06 -52.49 -0.42 0.55 16 47 H 0.13 1.09 8.06 -52.48 -0.42 0.66 16 48 H 0.13 1.14 8.06 -52.49 -0.42 0.71 16 49 H 0.39 9.15 7.80 -40.82 -0.32 8.83 16 50 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 LS Contribution 402.96 15.07 6.07 6.07 Total: -1.00 -28.21 402.96 -9.15 -37.35 By element: Atomic # 1 Polarization: 22.55 SS G_CDS: -8.12 Total: 14.43 kcal Atomic # 6 Polarization: -7.71 SS G_CDS: -2.41 Total: -10.12 kcal Atomic # 7 Polarization: -52.39 SS G_CDS: 0.21 Total: -52.18 kcal Atomic # 8 Polarization: -10.09 SS G_CDS: 0.09 Total: -10.00 kcal Atomic # 9 Polarization: -1.60 SS G_CDS: 0.04 Total: -1.56 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -28.21 -9.15 -37.35 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001496641064.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.404 kcal (2) G-P(sol) polarization free energy of solvation -28.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.352 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds