Wall clock time and date at job start Tue Mar 31 2020 19:56:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.46887 * 2 1 4 4 C 1.52998 * 109.47415 * 119.99683 * 2 1 3 5 5 H 1.08997 * 109.46983 * 60.00792 * 4 2 1 6 6 C 1.53003 * 109.46875 * 180.02562 * 4 2 1 7 7 N 1.46504 * 109.46698 * 175.00414 * 6 4 2 8 8 C 1.34784 * 119.99759 * 180.02562 * 7 6 4 9 9 O 1.21279 * 119.99838 * 359.97438 * 8 7 6 10 10 C 1.50694 * 119.99858 * 179.97438 * 8 7 6 11 11 H 1.09002 * 109.47313 * 300.00406 * 10 8 7 12 12 C 1.53006 * 109.47406 * 59.99954 * 10 8 7 13 13 C 1.52997 * 109.47274 * 180.02562 * 10 8 7 14 14 C 1.50696 * 109.47594 * 174.99820 * 13 10 8 15 15 C 1.38249 * 119.97160 * 89.99515 * 14 13 10 16 16 C 1.38196 * 120.02483 * 179.97438 * 15 14 13 17 17 C 1.38458 * 119.97492 * 0.02940 * 16 15 14 18 18 F 1.35104 * 120.02786 * 179.97438 * 17 16 15 19 19 C 1.38465 * 119.94675 * 0.24873 * 17 16 15 20 20 C 1.38197 * 119.97511 * 359.47283 * 19 17 16 21 21 N 1.46495 * 109.47501 * 300.00587 * 4 2 1 22 22 C 1.36931 * 120.00028 * 84.99417 * 21 4 2 23 23 H 1.07998 * 120.00099 * 0.02562 * 22 21 4 24 24 C 1.38812 * 120.00287 * 180.02562 * 22 21 4 25 25 N 1.31619 * 119.99596 * 0.02562 * 24 22 21 26 26 Si 1.86793 * 120.00614 * 180.02562 * 24 22 21 27 27 H 1.48503 * 109.46812 * 359.97438 * 26 24 22 28 28 H 1.48498 * 109.47410 * 120.00127 * 26 24 22 29 29 H 1.48501 * 109.47336 * 240.00297 * 26 24 22 30 30 H 1.08993 * 109.47448 * 60.00224 * 1 2 3 31 31 H 1.09010 * 109.46671 * 179.97438 * 1 2 3 32 32 H 1.08995 * 109.47072 * 299.99206 * 1 2 3 33 33 H 1.09000 * 109.47501 * 240.00942 * 2 1 3 34 34 H 1.09000 * 109.47557 * 180.02562 * 3 2 1 35 35 H 1.09004 * 109.47271 * 300.00322 * 3 2 1 36 36 H 1.09003 * 109.46826 * 59.99678 * 3 2 1 37 37 H 1.09000 * 109.47158 * 55.00314 * 6 4 2 38 38 H 1.09000 * 109.47248 * 294.99772 * 6 4 2 39 39 H 0.96993 * 120.00100 * 0.02562 * 7 6 4 40 40 H 1.09003 * 109.46612 * 300.00141 * 12 10 8 41 41 H 1.08997 * 109.46862 * 59.99644 * 12 10 8 42 42 H 1.08992 * 109.47534 * 180.02562 * 12 10 8 43 43 H 1.09004 * 109.47031 * 54.99667 * 13 10 8 44 44 H 1.09007 * 109.47042 * 294.99976 * 13 10 8 45 45 H 1.08001 * 119.98900 * 359.97438 * 15 14 13 46 46 H 1.07996 * 120.01603 * 180.02562 * 16 15 14 47 47 H 1.08007 * 120.01049 * 179.72700 * 19 17 16 48 48 H 1.07994 * 119.98812 * 180.27364 * 20 19 17 49 49 H 0.97003 * 119.99851 * 264.99883 * 21 4 2 50 50 H 0.97005 * 120.00532 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 1.6768 -1.7488 1.2492 6 6 3.5701 -0.7205 1.2494 7 7 4.0584 -1.3043 2.5013 8 6 5.3836 -1.4074 2.7249 9 8 6.1716 -1.0174 1.8896 10 6 5.8859 -2.0073 4.0128 11 1 5.5218 -1.4181 4.8544 12 6 5.3768 -3.4447 4.1386 13 6 7.4158 -2.0057 4.0136 14 6 7.9181 -2.4911 5.3489 15 6 8.1496 -3.8389 5.5513 16 6 8.6107 -4.2852 6.7753 17 6 8.8402 -3.3819 7.7992 18 9 9.2905 -3.8171 8.9964 19 6 8.6025 -2.0329 7.5971 20 6 8.1469 -1.5882 6.3705 21 7 1.5517 -0.0307 2.4454 22 6 0.3102 -0.3211 2.9447 23 1 -0.3088 -1.0595 2.4570 24 6 -0.1528 0.3335 4.0778 25 7 0.6014 1.2338 4.6720 26 14 -1.8461 -0.0632 4.7595 27 1 -2.4887 -1.1020 3.9150 28 1 -1.7144 -0.5668 6.1502 29 1 -2.6817 1.1644 4.7547 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0278 -0.0005 32 1 -0.3633 0.5137 0.8900 33 1 1.8934 -0.5137 -0.8900 34 1 3.1299 1.4427 -0.0005 35 1 1.6765 1.9564 -0.8900 36 1 1.6765 1.9564 0.8900 37 1 3.9330 0.3034 1.1601 38 1 3.9338 -1.3098 0.4076 39 1 3.4281 -1.6166 3.1691 40 1 4.2868 -3.4454 4.1382 41 1 5.7408 -4.0340 3.2970 42 1 5.7398 -3.8785 5.0703 43 1 7.7782 -0.9932 3.8353 44 1 7.7803 -2.6659 3.2265 45 1 7.9700 -4.5434 4.7527 46 1 8.7919 -5.3381 6.9331 47 1 8.7770 -1.3279 8.3965 48 1 7.9656 -0.5356 6.2113 49 1 2.1078 0.6324 2.8837 50 1 0.2778 1.6916 5.4636 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001496641064.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:56:14 Heat of formation + Delta-G solvation = -86.865848 kcal Electronic energy + Delta-G solvation = -29063.842488 eV Core-core repulsion = 25004.109190 eV Total energy + Delta-G solvation = -4059.733298 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -49.87487 -41.11215 -40.02596 -38.82399 -35.78157 -35.24104 -34.70307 -32.11254 -32.02268 -31.47859 -29.37609 -27.73435 -27.51068 -25.77810 -24.68029 -23.92035 -23.27855 -22.04662 -20.89866 -20.06992 -19.17133 -18.61268 -18.10214 -17.34339 -17.11067 -16.73184 -16.56763 -16.37018 -16.20475 -15.89955 -15.37564 -15.13176 -15.01920 -14.84704 -14.51400 -14.44979 -14.36548 -14.25708 -13.90838 -13.62444 -13.31691 -13.05393 -12.99644 -12.91338 -12.79312 -12.65432 -12.42439 -12.36546 -12.15044 -12.10655 -12.00300 -11.90851 -11.84644 -11.78880 -11.34266 -11.17316 -10.87341 -10.64891 -10.02160 -9.90488 -9.49157 -8.90372 -7.83925 -5.09230 0.15619 0.30482 1.49923 1.53455 1.59890 1.73263 2.33112 2.62243 2.66192 3.32293 3.50036 3.66503 3.77827 3.92971 3.94063 3.98222 3.99742 4.04649 4.18779 4.30216 4.36548 4.37759 4.39404 4.47241 4.50804 4.72280 4.79150 4.82117 4.88875 4.91904 4.97026 5.01291 5.03033 5.10227 5.15473 5.19218 5.22102 5.25073 5.29121 5.32455 5.33445 5.35392 5.60292 5.62159 5.63234 5.68191 5.84500 5.95758 6.36526 6.67947 7.32950 7.45251 8.17468 8.42539 9.38972 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.011904 B = 0.002649 C = 0.002301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2351.638234 B =10568.271873 C =12166.249828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.105 4.105 3 C -0.135 4.135 4 C 0.169 3.831 5 H 0.056 0.944 6 C 0.119 3.881 7 N -0.711 5.711 8 C 0.513 3.487 9 O -0.586 6.586 10 C -0.100 4.100 11 H 0.098 0.902 12 C -0.142 4.142 13 C -0.052 4.052 14 C -0.089 4.089 15 C -0.084 4.084 16 C -0.153 4.153 17 C 0.071 3.929 18 F -0.152 7.152 19 C -0.157 4.157 20 C -0.094 4.094 21 N -0.720 5.720 22 C -0.207 4.207 23 H 0.078 0.922 24 C -0.070 4.070 25 N -0.966 5.966 26 Si 0.953 3.047 27 H -0.267 1.267 28 H -0.300 1.300 29 H -0.305 1.305 30 H 0.049 0.951 31 H 0.045 0.955 32 H 0.051 0.949 33 H 0.078 0.922 34 H 0.052 0.948 35 H 0.055 0.945 36 H 0.034 0.966 37 H 0.055 0.945 38 H 0.075 0.925 39 H 0.409 0.591 40 H 0.059 0.941 41 H 0.068 0.932 42 H 0.081 0.919 43 H 0.071 0.929 44 H 0.083 0.917 45 H 0.154 0.846 46 H 0.152 0.848 47 H 0.144 0.856 48 H 0.140 0.860 49 H 0.373 0.627 50 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.185 -10.757 -1.054 17.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.127 4.127 3 C -0.192 4.192 4 C 0.060 3.940 5 H 0.074 0.926 6 C -0.005 4.005 7 N -0.361 5.361 8 C 0.301 3.699 9 O -0.467 6.467 10 C -0.121 4.121 11 H 0.116 0.884 12 C -0.199 4.199 13 C -0.090 4.090 14 C -0.089 4.089 15 C -0.102 4.102 16 C -0.171 4.171 17 C 0.052 3.948 18 F -0.130 7.130 19 C -0.176 4.176 20 C -0.112 4.112 21 N -0.360 5.360 22 C -0.339 4.339 23 H 0.096 0.904 24 C -0.263 4.263 25 N -0.617 5.617 26 Si 0.785 3.215 27 H -0.192 1.192 28 H -0.228 1.228 29 H -0.233 1.233 30 H 0.068 0.932 31 H 0.064 0.936 32 H 0.070 0.930 33 H 0.096 0.904 34 H 0.071 0.929 35 H 0.074 0.926 36 H 0.053 0.947 37 H 0.073 0.927 38 H 0.093 0.907 39 H 0.246 0.754 40 H 0.079 0.921 41 H 0.087 0.913 42 H 0.100 0.900 43 H 0.090 0.910 44 H 0.102 0.898 45 H 0.171 0.829 46 H 0.170 0.830 47 H 0.162 0.838 48 H 0.158 0.842 49 H 0.205 0.795 50 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 14.554 -10.606 -1.599 18.080 hybrid contribution -1.177 0.475 1.422 1.906 sum 13.377 -10.131 -0.178 16.781 Atomic orbital electron populations 1.21751 0.95566 1.00868 1.01165 1.21591 0.96227 0.96577 0.98280 1.21714 1.00105 0.96658 1.00750 1.20681 0.90305 0.95577 0.87410 0.92561 1.21620 0.94421 0.98109 0.86392 1.46031 1.07079 1.61952 1.21070 1.21044 0.82000 0.77895 0.88975 1.90639 1.56131 1.51432 1.48507 1.21247 0.96758 0.99375 0.94694 0.88375 1.21841 1.01492 0.92967 1.03600 1.20293 0.92340 1.02643 0.93706 1.19975 0.99340 0.93942 0.95667 1.21182 0.96843 0.95238 0.96913 1.21367 1.02223 1.00710 0.92828 1.18007 1.01518 0.93654 0.81642 1.91470 1.87043 1.90418 1.44109 1.21319 1.02559 0.94228 0.99457 1.21147 0.97501 1.00837 0.91750 1.42492 1.17046 1.47312 1.29157 1.19476 0.93237 1.15987 1.05236 0.90414 1.25264 1.00878 1.00296 0.99826 1.69797 1.38130 1.30934 1.22873 0.85364 0.81503 0.76803 0.77867 1.19176 1.22820 1.23338 0.93183 0.93559 0.93028 0.90365 0.92923 0.92642 0.94656 0.92704 0.90689 0.75423 0.92146 0.91326 0.90035 0.91010 0.89820 0.82874 0.83036 0.83787 0.84179 0.79474 0.94613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.50 8.26 71.98 0.59 -3.90 16 2 C -0.11 -3.26 2.80 -10.79 -0.03 -3.29 16 3 C -0.13 -4.31 8.69 71.98 0.63 -3.68 16 4 C 0.17 5.71 2.35 44.99 0.11 5.81 16 5 H 0.06 1.89 8.08 -2.39 -0.02 1.87 16 6 C 0.12 3.72 5.02 86.38 0.43 4.16 16 7 N -0.71 -21.63 5.28 -463.04 -2.45 -24.07 16 8 C 0.51 15.23 7.15 87.65 0.63 15.86 16 9 O -0.59 -20.84 15.92 -3.03 -0.05 -20.88 16 10 C -0.10 -2.24 2.71 -11.54 -0.03 -2.27 16 11 H 0.10 2.28 8.14 -2.39 -0.02 2.26 16 12 C -0.14 -2.60 8.66 71.98 0.62 -1.98 16 13 C -0.05 -1.06 4.19 29.85 0.12 -0.93 16 14 C -0.09 -1.61 4.71 -19.86 -0.09 -1.70 16 15 C -0.08 -1.30 7.96 22.26 0.18 -1.12 16 16 C -0.15 -2.48 10.03 22.31 0.22 -2.26 16 17 C 0.07 1.39 7.30 22.38 0.16 1.55 16 18 F -0.15 -3.27 17.27 44.97 0.78 -2.49 16 19 C -0.16 -2.92 10.03 22.31 0.22 -2.69 16 20 C -0.09 -1.74 9.70 22.26 0.22 -1.52 16 21 N -0.72 -30.78 3.67 -322.96 -1.19 -31.96 16 22 C -0.21 -9.98 7.57 84.03 0.64 -9.34 16 23 H 0.08 3.64 7.40 -2.91 -0.02 3.61 16 24 C -0.07 -3.70 5.50 84.86 0.47 -3.23 16 25 N -0.97 -55.04 13.06 21.65 0.28 -54.76 16 26 Si 0.95 43.61 29.55 68.60 2.03 45.63 16 27 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 28 H -0.30 -13.99 7.11 99.48 0.71 -13.28 16 29 H -0.31 -14.46 7.11 99.48 0.71 -13.75 16 30 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 31 H 0.05 1.44 8.14 -2.38 -0.02 1.42 16 32 H 0.05 2.09 6.01 -2.39 -0.01 2.07 16 33 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 34 H 0.05 1.58 6.32 -2.39 -0.02 1.57 16 35 H 0.05 1.56 8.14 -2.38 -0.02 1.54 16 36 H 0.03 1.36 7.60 -2.39 -0.02 1.34 16 37 H 0.05 1.88 6.17 -2.39 -0.01 1.87 16 38 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 39 H 0.41 12.71 7.56 -92.71 -0.70 12.01 16 40 H 0.06 1.18 7.56 -2.39 -0.02 1.16 16 41 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 42 H 0.08 1.30 6.27 -2.39 -0.01 1.28 16 43 H 0.07 1.63 7.90 -2.38 -0.02 1.61 16 44 H 0.08 1.65 8.09 -2.38 -0.02 1.63 16 45 H 0.15 1.70 8.04 -2.91 -0.02 1.68 16 46 H 0.15 1.84 8.06 -2.91 -0.02 1.81 16 47 H 0.14 2.26 8.06 -2.91 -0.02 2.24 16 48 H 0.14 2.32 8.06 -2.91 -0.02 2.30 16 49 H 0.37 17.97 7.80 -92.71 -0.72 17.24 16 50 H 0.24 13.89 8.31 -92.70 -0.77 13.12 16 Total: -1.00 -60.52 402.96 4.02 -56.51 By element: Atomic # 1 Polarization: 43.06 SS G_CDS: -0.48 Total: 42.59 kcal Atomic # 6 Polarization: -15.64 SS G_CDS: 5.09 Total: -10.56 kcal Atomic # 7 Polarization: -107.45 SS G_CDS: -3.35 Total: -110.80 kcal Atomic # 8 Polarization: -20.84 SS G_CDS: -0.05 Total: -20.88 kcal Atomic # 9 Polarization: -3.27 SS G_CDS: 0.78 Total: -2.49 kcal Atomic # 14 Polarization: 43.61 SS G_CDS: 2.03 Total: 45.63 kcal Total: -60.52 4.02 -56.51 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001496641064.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.359 kcal (2) G-P(sol) polarization free energy of solvation -60.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.507 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds