Wall clock time and date at job start Tue Mar 31 2020 20:08:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.46981 * 2 1 4 4 C 1.52998 * 109.47365 * 120.00045 * 2 1 3 5 5 C 1.52998 * 109.46919 * 294.99907 * 4 2 1 6 6 C 1.50704 * 109.47035 * 180.02562 * 5 4 2 7 7 C 1.38235 * 119.97747 * 90.00016 * 6 5 4 8 8 C 1.38197 * 120.03103 * 180.23082 * 7 6 5 9 9 C 1.38461 * 119.97066 * 359.51944 * 8 7 6 10 10 F 1.35098 * 120.02806 * 180.20849 * 9 8 7 11 11 C 1.38469 * 119.94884 * 0.48019 * 9 8 7 12 12 C 1.38196 * 119.97027 * 359.74915 * 11 9 8 13 13 C 1.50698 * 109.46846 * 240.00297 * 2 1 3 14 14 O 1.21281 * 119.99495 * 254.07205 * 13 2 1 15 15 N 1.34777 * 120.00051 * 74.07483 * 13 2 1 16 16 C 1.46494 * 120.00188 * 3.64272 * 15 13 2 17 17 C 1.46499 * 119.99747 * 183.64437 * 15 13 2 18 18 C 1.52995 * 109.47411 * 89.99684 * 17 15 13 19 19 N 1.46499 * 109.47411 * 179.97438 * 18 17 15 20 20 C 1.46502 * 120.00084 * 269.99819 * 19 18 17 21 21 C 1.36939 * 120.00232 * 90.00142 * 19 18 17 22 22 H 1.08001 * 119.99550 * 21.18151 * 21 19 18 23 23 C 1.38811 * 120.00013 * 201.18266 * 21 19 18 24 24 N 1.31618 * 120.00153 * 10.97017 * 23 21 19 25 25 Si 1.86797 * 119.99859 * 190.96520 * 23 21 19 26 26 H 1.48499 * 109.47191 * 0.02562 * 25 23 21 27 27 H 1.48506 * 109.46786 * 119.99940 * 25 23 21 28 28 H 1.48492 * 109.47590 * 239.99921 * 25 23 21 29 29 H 1.08999 * 109.46913 * 179.64244 * 1 2 3 30 30 H 1.08999 * 109.47098 * 299.63707 * 1 2 3 31 31 H 1.08991 * 109.47479 * 59.63750 * 1 2 3 32 32 H 1.09000 * 109.47155 * 175.00287 * 4 2 1 33 33 H 1.08993 * 109.47092 * 54.99758 * 4 2 1 34 34 H 1.09004 * 109.47352 * 60.00026 * 5 4 2 35 35 H 1.08999 * 109.47531 * 299.99957 * 5 4 2 36 36 H 1.08005 * 119.98957 * 359.95495 * 7 6 5 37 37 H 1.07999 * 120.01896 * 179.71995 * 8 7 6 38 38 H 1.07996 * 120.01592 * 179.72646 * 11 9 8 39 39 H 1.07998 * 119.98663 * 180.02562 * 12 11 9 40 40 H 1.08995 * 109.47341 * 85.65100 * 16 15 13 41 41 H 1.09005 * 109.46830 * 205.65589 * 16 15 13 42 42 H 1.08998 * 109.46978 * 325.64701 * 16 15 13 43 43 H 1.09002 * 109.47389 * 210.00122 * 17 15 13 44 44 H 1.09007 * 109.47271 * 329.99637 * 17 15 13 45 45 H 1.09002 * 109.47408 * 300.00039 * 18 17 15 46 46 H 1.09001 * 109.47259 * 60.00058 * 18 17 15 47 47 H 1.09006 * 109.46650 * 93.38349 * 20 19 18 48 48 H 1.08999 * 109.47479 * 213.38454 * 20 19 18 49 49 H 1.09002 * 109.46963 * 333.39355 * 20 19 18 50 50 H 0.96993 * 119.99859 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 1.6353 0.0690 2.4952 6 6 2.1383 -0.6411 3.7257 7 6 3.3917 -0.3471 4.2290 8 6 3.8559 -1.0010 5.3545 9 6 3.0610 -1.9439 5.9839 10 9 3.5119 -2.5808 7.0867 11 6 1.8056 -2.2377 5.4789 12 6 1.3455 -1.5858 4.3505 13 6 2.0323 -0.7103 -1.2305 14 8 2.5061 -1.8229 -1.1374 15 7 1.9549 -0.1093 -2.4344 16 6 1.4567 1.2645 -2.5365 17 6 2.3690 -0.8300 -3.6408 18 6 1.1698 -1.5801 -4.2237 19 7 1.5837 -2.3003 -5.4304 20 6 1.4992 -1.6466 -6.7388 21 6 2.0496 -3.5845 -5.3355 22 1 1.8053 -4.1850 -4.4717 23 6 2.8359 -4.1143 -6.3494 24 7 3.3131 -3.3282 -7.2910 25 14 3.2167 -5.9428 -6.3773 26 1 2.5662 -6.6017 -5.2163 27 1 2.6999 -6.5368 -7.6365 28 1 4.6860 -6.1437 -6.3018 29 1 -0.3633 -1.0276 -0.0064 30 1 -0.3633 0.5082 0.8932 31 1 -0.3634 0.5194 -0.8866 32 1 3.1264 -0.7994 1.2055 33 1 1.6054 -1.7197 1.2951 34 1 0.5490 0.1472 2.5390 35 1 2.0699 1.0675 2.4494 36 1 4.0103 0.3909 3.7399 37 1 4.8370 -0.7743 5.7450 38 1 1.1864 -2.9761 5.9663 39 1 0.3662 -1.8145 3.9566 40 1 2.2774 1.9620 -2.3689 41 1 1.0393 1.4266 -3.5303 42 1 0.6828 1.4270 -1.7865 43 1 2.7461 -0.1199 -4.3768 44 1 3.1546 -1.5419 -3.3871 45 1 0.7927 -2.2903 -3.4877 46 1 0.3842 -0.8683 -4.4773 47 1 2.4555 -1.1793 -6.9739 48 1 1.2601 -2.3884 -7.5008 49 1 0.7191 -0.8856 -6.7150 50 1 3.8622 -3.6985 -7.9997 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001496721184.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:08:39 Heat of formation + Delta-G solvation = -41.896420 kcal Electronic energy + Delta-G solvation = -28552.333670 eV Core-core repulsion = 24494.550393 eV Total energy + Delta-G solvation = -4057.783277 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -49.14960 -40.04995 -39.38925 -36.28841 -35.50950 -34.85671 -32.36025 -31.44896 -31.29371 -28.80258 -27.99269 -26.53912 -25.84313 -25.22945 -23.74705 -23.37078 -22.06576 -20.97040 -20.29735 -18.64160 -17.95670 -17.01000 -16.72004 -16.66476 -16.15822 -15.84225 -15.47033 -15.36761 -14.99732 -14.53153 -14.37520 -13.96346 -13.80578 -13.68753 -13.49316 -13.40154 -13.15738 -13.03974 -12.73069 -12.47175 -12.39177 -12.33836 -11.96013 -11.81416 -11.69996 -11.50333 -11.30632 -11.25205 -10.97163 -10.84403 -10.80028 -10.78601 -10.47606 -10.09020 -9.88940 -9.74322 -9.42461 -9.35113 -8.80811 -8.57986 -8.30797 -6.73067 -5.68698 -3.12715 0.82824 0.91714 2.92688 3.21418 3.35133 3.43425 3.49980 3.53765 3.97569 4.36175 4.37857 4.51696 4.58018 4.58193 4.74106 4.85577 4.94646 4.95881 5.13957 5.21344 5.25863 5.29161 5.38565 5.42979 5.50357 5.56942 5.60384 5.62911 5.70362 5.73435 5.78182 5.80888 5.84710 5.88496 5.93453 6.09434 6.21436 6.26738 6.28134 6.31024 6.58798 6.64863 6.74686 6.81455 7.08436 7.41784 7.73219 7.74499 7.88661 8.43569 8.53019 9.29026 9.90870 10.38033 11.37183 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.013623 B = 0.002175 C = 0.001955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2054.874534 B =12869.802021 C =14321.154321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.109 4.109 3 H 0.090 0.910 4 C -0.095 4.095 5 C -0.082 4.082 6 C -0.087 4.087 7 C -0.088 4.088 8 C -0.152 4.152 9 C 0.089 3.911 10 F -0.143 7.143 11 C -0.151 4.151 12 C -0.087 4.087 13 C 0.510 3.490 14 O -0.533 6.533 15 N -0.613 5.613 16 C 0.073 3.927 17 C 0.091 3.909 18 C 0.145 3.855 19 N -0.600 5.600 20 C 0.165 3.835 21 C -0.248 4.248 22 H 0.071 0.929 23 C -0.001 4.001 24 N -0.912 5.912 25 Si 0.906 3.094 26 H -0.278 1.278 27 H -0.290 1.290 28 H -0.290 1.290 29 H 0.063 0.937 30 H 0.067 0.933 31 H 0.065 0.935 32 H 0.070 0.930 33 H 0.075 0.925 34 H 0.078 0.922 35 H 0.074 0.926 36 H 0.132 0.868 37 H 0.134 0.866 38 H 0.134 0.866 39 H 0.133 0.867 40 H 0.050 0.950 41 H 0.073 0.927 42 H 0.071 0.929 43 H 0.066 0.934 44 H 0.084 0.916 45 H 0.045 0.955 46 H 0.034 0.966 47 H 0.025 0.975 48 H 0.050 0.950 49 H -0.006 1.006 50 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.557 13.460 22.766 27.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.131 4.131 3 H 0.108 0.892 4 C -0.133 4.133 5 C -0.119 4.119 6 C -0.087 4.087 7 C -0.106 4.106 8 C -0.170 4.170 9 C 0.070 3.930 10 F -0.122 7.122 11 C -0.170 4.170 12 C -0.105 4.105 13 C 0.297 3.703 14 O -0.409 6.409 15 N -0.347 5.347 16 C -0.071 4.071 17 C -0.033 4.033 18 C 0.017 3.983 19 N -0.323 5.323 20 C 0.020 3.980 21 C -0.377 4.377 22 H 0.088 0.912 23 C -0.199 4.199 24 N -0.558 5.558 25 Si 0.736 3.264 26 H -0.203 1.203 27 H -0.217 1.217 28 H -0.217 1.217 29 H 0.082 0.918 30 H 0.086 0.914 31 H 0.084 0.916 32 H 0.088 0.912 33 H 0.094 0.906 34 H 0.096 0.904 35 H 0.093 0.907 36 H 0.150 0.850 37 H 0.152 0.848 38 H 0.152 0.848 39 H 0.151 0.849 40 H 0.069 0.931 41 H 0.091 0.909 42 H 0.090 0.910 43 H 0.084 0.916 44 H 0.103 0.897 45 H 0.063 0.937 46 H 0.053 0.947 47 H 0.044 0.956 48 H 0.068 0.932 49 H 0.013 0.987 50 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -5.195 12.775 22.662 26.528 hybrid contribution 0.572 -0.951 0.015 1.110 sum -4.623 11.824 22.677 25.989 Atomic orbital electron populations 1.21900 0.92973 1.03179 1.02472 1.21313 0.97619 1.00564 0.93584 0.89156 1.21390 1.01901 0.99323 0.90689 1.20716 1.01519 0.98495 0.91150 1.19993 0.94455 0.97301 0.96930 1.20949 0.95398 0.99278 0.94992 1.21153 1.00621 0.97678 0.97588 1.17745 0.94184 0.95328 0.85786 1.91494 1.89309 1.80532 1.50819 1.21160 0.95191 1.02275 0.98384 1.20957 1.00141 0.95136 0.94291 1.20552 0.78895 0.86521 0.84379 1.90735 1.44593 1.19694 1.85843 1.48071 1.64597 1.14512 1.07556 1.21906 0.99028 0.82912 1.03255 1.22610 1.01070 0.95929 0.83681 1.21091 0.93595 0.94029 0.89617 1.43995 1.75250 1.12505 1.00574 1.20824 0.96005 0.94381 0.86768 1.19321 1.24840 0.87856 1.05701 0.91161 1.25009 0.97790 0.98283 0.98811 1.70078 1.37239 1.33098 1.15426 0.86146 0.77740 0.85135 0.77381 1.20255 1.21688 1.21710 0.91789 0.91417 0.91629 0.91167 0.90636 0.90353 0.90722 0.84969 0.84824 0.84796 0.84902 0.93104 0.90867 0.91026 0.91597 0.89714 0.93681 0.94742 0.95647 0.93152 0.98744 0.93875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.24 8.66 37.16 0.32 -0.92 16 2 C -0.11 -1.11 1.89 -91.77 -0.17 -1.29 16 3 H 0.09 0.73 7.46 -51.93 -0.39 0.34 16 4 C -0.10 -0.96 3.98 -26.73 -0.11 -1.07 16 5 C -0.08 -0.58 5.10 -27.88 -0.14 -0.72 16 6 C -0.09 -0.71 5.13 -104.62 -0.54 -1.25 16 7 C -0.09 -0.71 9.70 -39.60 -0.38 -1.10 16 8 C -0.15 -1.31 10.03 -39.51 -0.40 -1.71 16 9 C 0.09 0.86 7.30 -39.41 -0.29 0.57 16 10 F -0.14 -1.51 17.27 2.25 0.04 -1.47 16 11 C -0.15 -1.31 10.03 -39.51 -0.40 -1.71 16 12 C -0.09 -0.71 9.70 -39.59 -0.38 -1.09 16 13 C 0.51 7.98 6.89 -10.99 -0.08 7.90 16 14 O -0.53 -11.00 15.64 5.56 0.09 -10.91 16 15 N -0.61 -9.31 2.87 -181.58 -0.52 -9.83 16 16 C 0.07 0.74 9.84 59.84 0.59 1.33 16 17 C 0.09 1.79 5.74 -4.05 -0.02 1.76 16 18 C 0.15 3.11 6.03 -4.05 -0.02 3.08 16 19 N -0.60 -15.54 2.93 -181.12 -0.53 -16.07 16 20 C 0.16 4.09 9.01 59.85 0.54 4.63 16 21 C -0.25 -7.09 9.69 -15.06 -0.15 -7.24 16 22 H 0.07 2.04 7.84 -52.49 -0.41 1.63 16 23 C 0.00 -0.04 5.14 -17.43 -0.09 -0.13 16 24 N -0.91 -27.05 10.50 55.49 0.58 -26.47 16 25 Si 0.91 22.76 29.57 -169.99 -5.03 17.73 16 26 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 27 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 28 H -0.29 -7.34 7.11 56.52 0.40 -6.93 16 29 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.07 0.40 6.55 -51.93 -0.34 0.06 16 31 H 0.06 0.52 5.87 -51.93 -0.30 0.22 16 32 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 33 H 0.07 0.90 8.09 -51.93 -0.42 0.48 16 34 H 0.08 0.46 6.50 -51.93 -0.34 0.12 16 35 H 0.07 0.43 8.08 -51.93 -0.42 0.01 16 36 H 0.13 0.83 8.06 -52.48 -0.42 0.41 16 37 H 0.13 0.93 8.06 -52.49 -0.42 0.51 16 38 H 0.13 0.94 8.06 -52.49 -0.42 0.52 16 39 H 0.13 0.85 8.06 -52.49 -0.42 0.42 16 40 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.07 0.73 8.04 -51.93 -0.42 0.32 16 42 H 0.07 0.56 4.58 -51.93 -0.24 0.32 16 43 H 0.07 1.26 8.07 -51.93 -0.42 0.84 16 44 H 0.08 2.00 7.38 -51.93 -0.38 1.61 16 45 H 0.04 1.02 8.03 -51.93 -0.42 0.61 16 46 H 0.03 0.65 7.87 -51.93 -0.41 0.25 16 47 H 0.03 0.67 7.50 -51.93 -0.39 0.28 16 48 H 0.05 1.35 7.03 -51.93 -0.37 0.99 16 49 H -0.01 -0.13 7.85 -51.93 -0.41 -0.54 16 50 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 LS Contribution 405.66 15.07 6.11 6.11 Total: -1.00 -34.08 405.66 -9.13 -43.21 By element: Atomic # 1 Polarization: 4.81 SS G_CDS: -8.16 Total: -3.35 kcal Atomic # 6 Polarization: 2.77 SS G_CDS: -1.72 Total: 1.06 kcal Atomic # 7 Polarization: -51.90 SS G_CDS: -0.47 Total: -52.37 kcal Atomic # 8 Polarization: -11.00 SS G_CDS: 0.09 Total: -10.91 kcal Atomic # 9 Polarization: -1.51 SS G_CDS: 0.04 Total: -1.47 kcal Atomic # 14 Polarization: 22.76 SS G_CDS: -5.03 Total: 17.73 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -34.08 -9.13 -43.21 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001496721184.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.313 kcal (2) G-P(sol) polarization free energy of solvation -34.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.209 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds