Wall clock time and date at job start Tue Mar 31 2020 20:08:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.46981 * 2 1 4 4 C 1.52998 * 109.47365 * 120.00045 * 2 1 3 5 5 C 1.52998 * 109.46919 * 294.99907 * 4 2 1 6 6 C 1.50704 * 109.47035 * 180.02562 * 5 4 2 7 7 C 1.38235 * 119.97747 * 90.00016 * 6 5 4 8 8 C 1.38197 * 120.03103 * 180.23082 * 7 6 5 9 9 C 1.38461 * 119.97066 * 359.51944 * 8 7 6 10 10 F 1.35098 * 120.02806 * 180.20849 * 9 8 7 11 11 C 1.38469 * 119.94884 * 0.48019 * 9 8 7 12 12 C 1.38196 * 119.97027 * 359.74915 * 11 9 8 13 13 C 1.50698 * 109.46846 * 240.00297 * 2 1 3 14 14 O 1.21281 * 119.99495 * 254.07205 * 13 2 1 15 15 N 1.34777 * 120.00051 * 74.07483 * 13 2 1 16 16 C 1.46494 * 120.00188 * 3.64272 * 15 13 2 17 17 C 1.46499 * 119.99747 * 183.64437 * 15 13 2 18 18 C 1.52995 * 109.47411 * 89.99684 * 17 15 13 19 19 N 1.46499 * 109.47411 * 179.97438 * 18 17 15 20 20 C 1.46502 * 120.00084 * 269.99819 * 19 18 17 21 21 C 1.36939 * 120.00232 * 90.00142 * 19 18 17 22 22 H 1.08001 * 119.99550 * 21.18151 * 21 19 18 23 23 C 1.38811 * 120.00013 * 201.18266 * 21 19 18 24 24 N 1.31618 * 120.00153 * 10.97017 * 23 21 19 25 25 Si 1.86797 * 119.99859 * 190.96520 * 23 21 19 26 26 H 1.48499 * 109.47191 * 0.02562 * 25 23 21 27 27 H 1.48506 * 109.46786 * 119.99940 * 25 23 21 28 28 H 1.48492 * 109.47590 * 239.99921 * 25 23 21 29 29 H 1.08999 * 109.46913 * 179.64244 * 1 2 3 30 30 H 1.08999 * 109.47098 * 299.63707 * 1 2 3 31 31 H 1.08991 * 109.47479 * 59.63750 * 1 2 3 32 32 H 1.09000 * 109.47155 * 175.00287 * 4 2 1 33 33 H 1.08993 * 109.47092 * 54.99758 * 4 2 1 34 34 H 1.09004 * 109.47352 * 60.00026 * 5 4 2 35 35 H 1.08999 * 109.47531 * 299.99957 * 5 4 2 36 36 H 1.08005 * 119.98957 * 359.95495 * 7 6 5 37 37 H 1.07999 * 120.01896 * 179.71995 * 8 7 6 38 38 H 1.07996 * 120.01592 * 179.72646 * 11 9 8 39 39 H 1.07998 * 119.98663 * 180.02562 * 12 11 9 40 40 H 1.08995 * 109.47341 * 85.65100 * 16 15 13 41 41 H 1.09005 * 109.46830 * 205.65589 * 16 15 13 42 42 H 1.08998 * 109.46978 * 325.64701 * 16 15 13 43 43 H 1.09002 * 109.47389 * 210.00122 * 17 15 13 44 44 H 1.09007 * 109.47271 * 329.99637 * 17 15 13 45 45 H 1.09002 * 109.47408 * 300.00039 * 18 17 15 46 46 H 1.09001 * 109.47259 * 60.00058 * 18 17 15 47 47 H 1.09006 * 109.46650 * 93.38349 * 20 19 18 48 48 H 1.08999 * 109.47479 * 213.38454 * 20 19 18 49 49 H 1.09002 * 109.46963 * 333.39355 * 20 19 18 50 50 H 0.96993 * 119.99859 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 1.6353 0.0690 2.4952 6 6 2.1383 -0.6411 3.7257 7 6 3.3917 -0.3471 4.2290 8 6 3.8559 -1.0010 5.3545 9 6 3.0610 -1.9439 5.9839 10 9 3.5119 -2.5808 7.0867 11 6 1.8056 -2.2377 5.4789 12 6 1.3455 -1.5858 4.3505 13 6 2.0323 -0.7103 -1.2305 14 8 2.5061 -1.8229 -1.1374 15 7 1.9549 -0.1093 -2.4344 16 6 1.4567 1.2645 -2.5365 17 6 2.3690 -0.8300 -3.6408 18 6 1.1698 -1.5801 -4.2237 19 7 1.5837 -2.3003 -5.4304 20 6 1.4992 -1.6466 -6.7388 21 6 2.0496 -3.5845 -5.3355 22 1 1.8053 -4.1850 -4.4717 23 6 2.8359 -4.1143 -6.3494 24 7 3.3131 -3.3282 -7.2910 25 14 3.2167 -5.9428 -6.3773 26 1 2.5662 -6.6017 -5.2163 27 1 2.6999 -6.5368 -7.6365 28 1 4.6860 -6.1437 -6.3018 29 1 -0.3633 -1.0276 -0.0064 30 1 -0.3633 0.5082 0.8932 31 1 -0.3634 0.5194 -0.8866 32 1 3.1264 -0.7994 1.2055 33 1 1.6054 -1.7197 1.2951 34 1 0.5490 0.1472 2.5390 35 1 2.0699 1.0675 2.4494 36 1 4.0103 0.3909 3.7399 37 1 4.8370 -0.7743 5.7450 38 1 1.1864 -2.9761 5.9663 39 1 0.3662 -1.8145 3.9566 40 1 2.2774 1.9620 -2.3689 41 1 1.0393 1.4266 -3.5303 42 1 0.6828 1.4270 -1.7865 43 1 2.7461 -0.1199 -4.3768 44 1 3.1546 -1.5419 -3.3871 45 1 0.7927 -2.2903 -3.4877 46 1 0.3842 -0.8683 -4.4773 47 1 2.4555 -1.1793 -6.9739 48 1 1.2601 -2.3884 -7.5008 49 1 0.7191 -0.8856 -6.7150 50 1 3.8622 -3.6985 -7.9997 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001496721184.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:08:38 Heat of formation + Delta-G solvation = -60.548853 kcal Electronic energy + Delta-G solvation = -28553.142500 eV Core-core repulsion = 24494.550393 eV Total energy + Delta-G solvation = -4058.592107 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -49.90261 -41.16884 -40.09916 -37.92314 -36.50457 -36.38797 -33.59478 -32.84626 -32.06177 -30.27829 -28.83320 -27.94895 -27.56289 -26.18968 -25.17538 -23.99170 -23.17035 -22.27725 -21.49550 -19.76403 -18.83925 -18.64596 -18.06831 -17.38069 -17.22249 -16.99319 -16.60174 -16.32553 -16.30920 -15.74254 -15.56208 -15.11887 -15.01265 -14.74070 -14.55368 -14.41743 -14.33838 -13.97720 -13.89851 -13.83331 -13.56866 -13.31135 -13.08566 -12.99601 -12.83451 -12.77745 -12.48938 -12.46800 -12.39091 -12.25250 -12.06054 -12.03663 -11.95591 -11.70015 -11.60144 -11.48821 -10.70950 -10.59658 -10.04661 -9.69613 -9.47980 -8.79685 -7.88268 -5.34411 0.16494 0.29758 1.40963 1.42591 1.53466 1.73190 2.11074 2.48709 2.62777 3.26335 3.31811 3.57219 3.70137 3.78559 3.79022 3.97354 4.02914 4.13896 4.17330 4.32472 4.37339 4.38100 4.47062 4.53282 4.57559 4.60762 4.63816 4.75654 4.82989 4.84490 4.90609 4.94211 4.97748 5.03548 5.08768 5.14417 5.15262 5.18617 5.19750 5.30343 5.34482 5.43194 5.46861 5.56004 5.65584 5.66352 5.72589 5.96958 6.29294 6.55956 7.12344 7.31496 7.83097 8.22908 9.15358 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.013623 B = 0.002175 C = 0.001955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2054.874534 B =12869.802021 C =14321.154321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.096 4.096 3 H 0.127 0.873 4 C -0.091 4.091 5 C -0.070 4.070 6 C -0.094 4.094 7 C -0.094 4.094 8 C -0.160 4.160 9 C 0.064 3.936 10 F -0.154 7.154 11 C -0.160 4.160 12 C -0.094 4.094 13 C 0.499 3.501 14 O -0.596 6.596 15 N -0.613 5.613 16 C 0.065 3.935 17 C 0.109 3.891 18 C 0.151 3.849 19 N -0.618 5.618 20 C 0.179 3.821 21 C -0.260 4.260 22 H 0.057 0.943 23 C -0.051 4.051 24 N -0.935 5.935 25 Si 0.966 3.034 26 H -0.274 1.274 27 H -0.282 1.282 28 H -0.291 1.291 29 H 0.041 0.959 30 H 0.104 0.896 31 H 0.075 0.925 32 H 0.047 0.953 33 H 0.049 0.951 34 H 0.099 0.901 35 H 0.098 0.902 36 H 0.151 0.849 37 H 0.145 0.855 38 H 0.145 0.855 39 H 0.151 0.849 40 H 0.071 0.929 41 H 0.078 0.922 42 H 0.104 0.896 43 H 0.072 0.928 44 H 0.033 0.967 45 H 0.024 0.976 46 H 0.068 0.932 47 H 0.004 0.996 48 H 0.022 0.978 49 H 0.035 0.965 50 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.186 16.108 23.640 29.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.117 4.117 3 H 0.144 0.856 4 C -0.129 4.129 5 C -0.107 4.107 6 C -0.094 4.094 7 C -0.112 4.112 8 C -0.179 4.179 9 C 0.045 3.955 10 F -0.133 7.133 11 C -0.179 4.179 12 C -0.112 4.112 13 C 0.288 3.712 14 O -0.477 6.477 15 N -0.346 5.346 16 C -0.077 4.077 17 C -0.016 4.016 18 C 0.024 3.976 19 N -0.342 5.342 20 C 0.034 3.966 21 C -0.390 4.390 22 H 0.074 0.926 23 C -0.246 4.246 24 N -0.582 5.582 25 Si 0.794 3.206 26 H -0.199 1.199 27 H -0.209 1.209 28 H -0.218 1.218 29 H 0.061 0.939 30 H 0.122 0.878 31 H 0.094 0.906 32 H 0.066 0.934 33 H 0.067 0.933 34 H 0.117 0.883 35 H 0.116 0.884 36 H 0.169 0.831 37 H 0.163 0.837 38 H 0.162 0.838 39 H 0.168 0.832 40 H 0.090 0.910 41 H 0.097 0.903 42 H 0.122 0.878 43 H 0.090 0.910 44 H 0.052 0.948 45 H 0.042 0.958 46 H 0.086 0.914 47 H 0.023 0.977 48 H 0.041 0.959 49 H 0.054 0.946 50 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -6.857 15.484 23.559 29.014 hybrid contribution 1.053 -1.731 -0.225 2.038 sum -5.803 13.754 23.334 27.701 Atomic orbital electron populations 1.21939 0.90970 1.02560 1.04765 1.21361 0.98954 1.01299 0.90114 0.85565 1.21310 1.00338 0.98785 0.92468 1.20683 1.02899 0.98641 0.88499 1.20248 0.94527 0.97312 0.97332 1.21239 0.95703 0.99492 0.94728 1.21382 1.01134 0.97500 0.97869 1.18057 0.95092 0.96263 0.86104 1.91459 1.89506 1.80871 1.51428 1.21382 0.95087 1.02652 0.98775 1.21241 1.01013 0.94895 0.94005 1.21703 0.77600 0.85990 0.85872 1.90710 1.47350 1.22763 1.86835 1.48109 1.64249 1.16247 1.05970 1.22272 1.00677 0.79838 1.04878 1.21961 0.98652 0.95360 0.85676 1.21118 0.94836 0.93959 0.87720 1.44194 1.75278 1.12381 1.02327 1.20599 0.96172 0.94145 0.85657 1.19441 1.24902 0.89431 1.05275 0.92556 1.25710 0.98021 1.02164 0.98712 1.70215 1.37781 1.34444 1.15809 0.85219 0.77227 0.80609 0.77525 1.19919 1.20878 1.21771 0.93936 0.87781 0.90634 0.93394 0.93255 0.88264 0.88379 0.83108 0.83711 0.83750 0.83180 0.91045 0.90301 0.87761 0.90990 0.94796 0.95794 0.91364 0.97743 0.95935 0.94630 0.94100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.87 8.66 71.98 0.62 -1.25 16 2 C -0.10 -1.69 1.89 -11.54 -0.02 -1.71 16 3 H 0.13 1.37 7.46 -2.39 -0.02 1.35 16 4 C -0.09 -1.70 3.98 30.59 0.12 -1.58 16 5 C -0.07 -0.75 5.10 29.85 0.15 -0.60 16 6 C -0.09 -1.36 5.13 -19.86 -0.10 -1.46 16 7 C -0.09 -1.38 9.70 22.26 0.22 -1.16 16 8 C -0.16 -2.69 10.03 22.31 0.22 -2.47 16 9 C 0.06 1.24 7.30 22.38 0.16 1.41 16 10 F -0.15 -3.34 17.27 44.97 0.78 -2.57 16 11 C -0.16 -2.72 10.03 22.31 0.22 -2.49 16 12 C -0.09 -1.40 9.70 22.26 0.22 -1.18 16 13 C 0.50 15.36 6.89 87.66 0.60 15.97 16 14 O -0.60 -25.83 15.64 -3.03 -0.05 -25.88 16 15 N -0.61 -17.77 2.87 -846.78 -2.43 -20.20 16 16 C 0.06 1.06 9.84 127.77 1.26 2.31 16 17 C 0.11 4.33 5.74 86.38 0.50 4.82 16 18 C 0.15 6.44 6.03 86.38 0.52 6.96 16 19 N -0.62 -32.40 2.93 -726.93 -2.13 -34.53 16 20 C 0.18 8.86 9.01 127.77 1.15 10.01 16 21 C -0.26 -15.33 9.69 84.03 0.81 -14.51 16 22 H 0.06 3.40 7.84 -2.91 -0.02 3.38 16 23 C -0.05 -3.01 5.14 84.86 0.44 -2.57 16 24 N -0.94 -56.58 10.50 21.65 0.23 -56.35 16 25 Si 0.97 47.76 29.57 68.60 2.03 49.78 16 26 H -0.27 -13.27 7.11 99.48 0.71 -12.56 16 27 H -0.28 -13.54 7.11 99.48 0.71 -12.83 16 28 H -0.29 -14.33 7.11 99.48 0.71 -13.62 16 29 H 0.04 0.75 8.14 -2.39 -0.02 0.73 16 30 H 0.10 0.64 6.55 -2.39 -0.02 0.62 16 31 H 0.07 0.84 5.87 -2.39 -0.01 0.82 16 32 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 33 H 0.05 1.17 8.09 -2.39 -0.02 1.16 16 34 H 0.10 0.68 6.50 -2.38 -0.02 0.66 16 35 H 0.10 0.65 8.08 -2.39 -0.02 0.63 16 36 H 0.15 1.55 8.06 -2.91 -0.02 1.53 16 37 H 0.15 1.95 8.06 -2.91 -0.02 1.93 16 38 H 0.14 1.99 8.06 -2.91 -0.02 1.97 16 39 H 0.15 1.62 8.06 -2.91 -0.02 1.59 16 40 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 41 H 0.08 1.25 8.04 -2.38 -0.02 1.23 16 42 H 0.10 1.05 4.58 -2.39 -0.01 1.04 16 43 H 0.07 2.73 8.07 -2.39 -0.02 2.71 16 44 H 0.03 1.68 7.38 -2.38 -0.02 1.66 16 45 H 0.02 1.11 8.03 -2.39 -0.02 1.09 16 46 H 0.07 2.44 7.87 -2.39 -0.02 2.42 16 47 H 0.00 0.23 7.50 -2.38 -0.02 0.21 16 48 H 0.02 1.20 7.03 -2.39 -0.02 1.19 16 49 H 0.04 1.44 7.85 -2.39 -0.02 1.42 16 50 H 0.25 14.57 8.31 -92.71 -0.77 13.80 16 Total: -1.00 -79.57 405.66 6.43 -73.13 By element: Atomic # 1 Polarization: 5.21 SS G_CDS: 0.92 Total: 6.13 kcal Atomic # 6 Polarization: 3.39 SS G_CDS: 7.10 Total: 10.49 kcal Atomic # 7 Polarization: -106.76 SS G_CDS: -4.33 Total: -111.09 kcal Atomic # 8 Polarization: -25.83 SS G_CDS: -0.05 Total: -25.88 kcal Atomic # 9 Polarization: -3.34 SS G_CDS: 0.78 Total: -2.57 kcal Atomic # 14 Polarization: 47.76 SS G_CDS: 2.03 Total: 49.78 kcal Total: -79.57 6.43 -73.13 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001496721184.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.586 kcal (2) G-P(sol) polarization free energy of solvation -79.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.135 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds