Wall clock time and date at job start Tue Mar 31 2020 19:32:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52994 * 109.47382 * 2 1 4 4 C 1.50705 * 109.47243 * 120.00331 * 2 1 3 5 5 N 1.29947 * 126.28190 * 299.97148 * 4 2 1 6 6 O 1.21301 * 110.24467 * 180.02562 * 5 4 2 7 7 C 1.33638 * 109.81462 * 0.02562 * 6 5 4 8 8 C 1.50699 * 126.55229 * 179.97438 * 7 6 5 9 9 C 1.53001 * 109.46973 * 270.02012 * 8 7 6 10 10 C 1.50708 * 109.47224 * 179.97438 * 9 8 7 11 11 O 1.21283 * 119.99467 * 0.02562 * 10 9 8 12 12 N 1.34771 * 119.99868 * 180.02562 * 10 9 8 13 13 C 1.46506 * 119.99858 * 180.02562 * 12 10 9 14 14 H 1.09004 * 109.46413 * 324.99258 * 13 12 10 15 15 C 1.52996 * 109.47215 * 84.99661 * 13 12 10 16 16 C 1.52994 * 109.47132 * 205.00028 * 13 12 10 17 17 C 1.53940 * 113.74425 * 161.99291 * 16 13 12 18 18 N 1.47813 * 86.03742 * 222.07990 * 17 16 13 19 19 C 1.36939 * 134.45700 * 204.63917 * 18 17 16 20 20 H 1.07993 * 120.00048 * 179.86964 * 19 18 17 21 21 C 1.38812 * 120.00124 * 359.87128 * 19 18 17 22 22 N 1.31624 * 119.99923 * 0.02562 * 21 19 18 23 23 Si 1.86794 * 120.00044 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.47274 * 0.02562 * 23 21 19 25 25 H 1.48502 * 109.46989 * 120.00397 * 23 21 19 26 26 H 1.48500 * 109.47446 * 240.00178 * 23 21 19 27 27 C 1.47581 * 91.04980 * 24.54852 * 18 17 16 28 28 N 1.31124 * 106.89863 * 0.22454 * 7 6 5 29 29 H 1.09000 * 109.46593 * 299.99627 * 1 2 3 30 30 H 1.08999 * 109.47215 * 59.99758 * 1 2 3 31 31 H 1.09001 * 109.46803 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.46882 * 239.99925 * 2 1 3 33 33 H 1.09003 * 109.47722 * 180.02562 * 3 2 1 34 34 H 1.08999 * 109.47143 * 300.00286 * 3 2 1 35 35 H 1.09002 * 109.47173 * 60.00103 * 3 2 1 36 36 H 1.09001 * 109.47337 * 150.01879 * 8 7 6 37 37 H 1.09003 * 109.47512 * 30.01519 * 8 7 6 38 38 H 1.09001 * 109.46770 * 60.00102 * 9 8 7 39 39 H 1.08997 * 109.47248 * 299.99965 * 9 8 7 40 40 H 0.96998 * 120.00512 * 359.97438 * 12 10 9 41 41 H 1.09006 * 109.46879 * 175.81450 * 15 13 12 42 42 H 1.08996 * 109.47166 * 55.80924 * 15 13 12 43 43 H 1.09004 * 109.47115 * 295.80771 * 15 13 12 44 44 H 1.09003 * 112.94389 * 293.58394 * 16 13 12 45 45 H 1.08998 * 113.77360 * 336.34571 * 17 16 13 46 46 H 1.08999 * 113.76957 * 107.74222 * 17 16 13 47 47 H 0.96997 * 119.99980 * 179.97438 * 22 21 19 48 48 H 1.08994 * 113.77118 * 221.14684 * 27 18 17 49 49 H 1.09006 * 113.87070 * 89.76609 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0324 -0.7105 1.2305 5 7 1.7953 -0.3744 2.4631 6 8 2.3422 -1.1472 3.2215 7 6 3.0004 -2.0775 2.5234 8 6 3.8082 -3.2181 3.0869 9 6 5.2588 -2.7705 3.2774 10 6 6.0665 -3.9109 3.8415 11 8 5.5343 -4.9769 4.0683 12 7 7.3801 -3.7462 4.0939 13 6 8.1654 -4.8550 4.6418 14 1 7.5456 -5.4368 5.3241 15 6 8.6472 -5.7519 3.4997 16 6 9.3736 -4.2994 5.3983 17 6 10.0152 -5.3081 6.3681 18 7 10.1193 -4.1768 7.3138 19 6 10.9305 -3.8885 8.3787 20 1 10.8004 -2.9643 8.9219 21 6 11.9201 -4.7842 8.7599 22 7 12.0791 -5.9104 8.0974 23 14 13.0272 -4.3905 10.2120 24 1 12.6467 -3.0730 10.7817 25 1 12.8740 -5.4412 11.2503 26 1 14.4406 -4.3448 9.7589 27 6 9.0000 -3.4823 6.6484 28 7 2.8136 -1.8051 1.2545 29 1 -0.3632 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 3.1301 1.4425 -0.0005 34 1 1.6767 1.9563 -0.8899 35 1 1.6768 1.9563 0.8900 36 1 3.7758 -4.0617 2.3974 37 1 3.3914 -3.5184 4.0483 38 1 5.2911 -1.9269 3.9669 39 1 5.6756 -2.4702 2.3161 40 1 7.8058 -2.8938 3.9122 41 1 9.2926 -6.5341 3.8996 42 1 9.2045 -5.1541 2.7786 43 1 7.7875 -6.2067 3.0075 44 1 10.0906 -3.8006 4.7462 45 1 9.3359 -6.0945 6.6970 46 1 10.9786 -5.6902 6.0307 47 1 12.7708 -6.5361 8.3635 48 1 9.1543 -2.4094 6.5343 49 1 8.0209 -3.7298 7.0586 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001506641498.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:32:06 Heat of formation + Delta-G solvation = 64.538658 kcal Electronic energy + Delta-G solvation = -28190.261507 eV Core-core repulsion = 24157.013562 eV Total energy + Delta-G solvation = -4033.247944 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -45.90169 -39.96994 -38.14672 -37.25413 -35.64597 -34.83809 -33.78492 -32.21776 -31.39540 -30.27374 -27.72210 -27.49383 -26.18229 -24.95519 -24.73407 -23.99032 -23.15053 -21.32696 -20.41843 -20.28843 -19.13599 -18.36905 -17.89228 -17.08378 -16.81859 -16.10622 -15.79178 -15.47953 -15.18103 -14.81144 -14.49051 -14.32270 -13.93624 -13.88652 -13.62248 -13.52449 -13.16502 -12.85403 -12.76440 -12.73490 -12.30665 -12.15209 -12.07811 -12.06500 -11.65585 -11.61512 -11.56135 -11.50900 -11.41987 -11.23593 -11.22762 -10.90514 -10.69042 -10.34769 -10.25994 -10.09087 -9.82984 -9.65632 -9.43479 -8.89785 -8.80428 -6.88404 -5.77916 -3.09947 0.81413 1.88739 2.44221 2.61838 3.12181 3.32299 3.38152 3.43476 3.46024 3.70035 4.31613 4.41355 4.44260 4.51104 4.52539 4.64793 4.73526 4.93743 5.09455 5.09750 5.12346 5.20242 5.22929 5.27762 5.32660 5.37458 5.39384 5.47485 5.53074 5.58043 5.63411 5.65500 5.66755 5.79449 5.79982 5.98166 6.05903 6.25506 6.34030 6.43066 6.56477 6.61050 6.77713 7.21459 7.35042 7.54380 7.57107 7.86109 7.97365 8.23529 9.03883 9.70100 10.58998 11.39415 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.024624 B = 0.001720 C = 0.001663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1136.811215 B =16271.119741 C =16832.650907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.004 4.004 3 C -0.145 4.145 4 C 0.174 3.826 5 N -0.382 5.382 6 O 0.078 5.922 7 C 0.187 3.813 8 C -0.012 4.012 9 C -0.140 4.140 10 C 0.516 3.484 11 O -0.543 6.543 12 N -0.716 5.716 13 C 0.150 3.850 14 H 0.088 0.912 15 C -0.158 4.158 16 C -0.147 4.147 17 C 0.175 3.825 18 N -0.612 5.612 19 C -0.223 4.223 20 H 0.080 0.920 21 C -0.008 4.008 22 N -0.921 5.921 23 Si 0.911 3.089 24 H -0.280 1.280 25 H -0.290 1.290 26 H -0.290 1.290 27 C 0.125 3.875 28 N -0.480 5.480 29 H 0.063 0.937 30 H 0.071 0.929 31 H 0.058 0.942 32 H 0.102 0.898 33 H 0.059 0.941 34 H 0.071 0.929 35 H 0.063 0.937 36 H 0.119 0.881 37 H 0.112 0.888 38 H 0.102 0.898 39 H 0.102 0.898 40 H 0.400 0.600 41 H 0.071 0.929 42 H 0.053 0.947 43 H 0.053 0.947 44 H 0.088 0.912 45 H 0.028 0.972 46 H 0.075 0.925 47 H 0.253 0.747 48 H 0.040 0.960 49 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.560 10.422 -18.388 28.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.024 4.024 3 C -0.203 4.203 4 C -0.099 4.099 5 N -0.089 5.089 6 O 0.020 5.980 7 C -0.033 4.033 8 C -0.051 4.051 9 C -0.181 4.181 10 C 0.302 3.698 11 O -0.420 6.420 12 N -0.366 5.366 13 C 0.045 3.955 14 H 0.106 0.894 15 C -0.217 4.217 16 C -0.167 4.167 17 C 0.049 3.951 18 N -0.339 5.339 19 C -0.351 4.351 20 H 0.097 0.903 21 C -0.205 4.205 22 N -0.568 5.568 23 Si 0.742 3.258 24 H -0.205 1.205 25 H -0.217 1.217 26 H -0.217 1.217 27 C -0.001 4.001 28 N -0.214 5.214 29 H 0.082 0.918 30 H 0.090 0.910 31 H 0.077 0.923 32 H 0.120 0.880 33 H 0.078 0.922 34 H 0.090 0.910 35 H 0.082 0.918 36 H 0.137 0.863 37 H 0.131 0.869 38 H 0.120 0.880 39 H 0.120 0.880 40 H 0.233 0.767 41 H 0.090 0.910 42 H 0.072 0.928 43 H 0.072 0.928 44 H 0.106 0.894 45 H 0.046 0.954 46 H 0.093 0.907 47 H 0.063 0.937 48 H 0.058 0.942 49 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -20.111 10.234 -18.184 28.980 hybrid contribution 0.899 0.432 0.921 1.358 sum -19.212 10.666 -17.263 27.944 Atomic orbital electron populations 1.21852 0.92849 1.02611 1.03030 1.19571 0.96441 0.95438 0.90999 1.21853 1.01543 0.93915 1.03037 1.25856 0.96581 0.92861 0.94633 1.74597 1.17552 1.13869 1.02856 1.85322 1.47677 1.29716 1.35294 1.28852 0.94617 0.93940 0.85939 1.19975 0.91027 0.90163 1.03973 1.21640 0.93700 0.98826 1.03963 1.20233 0.82533 0.88964 0.78092 1.90728 1.70769 1.27924 1.52597 1.46129 1.08926 1.16561 1.65025 1.21137 0.92224 0.87252 0.94839 0.89368 1.22113 1.01171 0.99986 0.98399 1.23854 0.95793 1.01249 0.95835 1.22234 0.98118 0.89700 0.85028 1.45992 1.33615 1.19222 1.35024 1.19069 1.08226 1.02770 1.04987 0.90262 1.24780 0.99543 0.96515 0.99641 1.69817 1.35193 1.10186 1.41638 0.86058 0.80390 0.77435 0.81945 1.20494 1.21738 1.21699 1.22531 0.91819 0.95780 0.89940 1.71934 1.17174 1.14172 1.18115 0.91834 0.90997 0.92270 0.88017 0.92212 0.91000 0.91828 0.86272 0.86928 0.88002 0.88009 0.76650 0.91038 0.92802 0.92757 0.89359 0.95385 0.90705 0.93672 0.94194 0.95015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.86 9.18 37.16 0.34 -0.52 16 2 C 0.00 -0.03 3.39 -91.77 -0.31 -0.34 16 3 C -0.15 -0.87 9.18 37.15 0.34 -0.53 16 4 C 0.17 1.74 6.72 -156.37 -1.05 0.69 16 5 N -0.38 -4.20 12.16 30.90 0.38 -3.83 16 6 O 0.08 0.81 11.31 18.11 0.20 1.02 16 7 C 0.19 1.74 7.77 -13.06 -0.10 1.64 16 8 C -0.01 -0.09 5.13 -27.88 -0.14 -0.24 16 9 C -0.14 -1.04 5.68 -27.88 -0.16 -1.20 16 10 C 0.52 5.77 7.79 -10.98 -0.09 5.68 16 11 O -0.54 -8.06 15.64 5.56 0.09 -7.97 16 12 N -0.72 -8.00 4.95 -53.80 -0.27 -8.27 16 13 C 0.15 2.14 2.29 -67.93 -0.16 1.98 16 14 H 0.09 1.47 7.49 -51.93 -0.39 1.08 16 15 C -0.16 -2.08 9.46 37.16 0.35 -1.73 16 16 C -0.15 -2.51 3.35 -89.70 -0.30 -2.81 16 17 C 0.18 3.96 6.90 -2.84 -0.02 3.94 16 18 N -0.61 -15.44 3.70 -177.71 -0.66 -16.10 16 19 C -0.22 -6.22 10.70 -15.06 -0.16 -6.39 16 20 H 0.08 2.14 7.83 -52.49 -0.41 1.73 16 21 C -0.01 -0.24 5.50 -17.43 -0.10 -0.33 16 22 N -0.92 -27.10 11.39 55.49 0.63 -26.47 16 23 Si 0.91 22.05 29.55 -169.99 -5.02 17.03 16 24 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 25 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 26 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 27 C 0.13 2.44 8.38 -2.97 -0.02 2.41 16 28 N -0.48 -5.05 11.55 -9.87 -0.11 -5.17 16 29 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 30 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 32 H 0.10 0.65 8.14 -51.93 -0.42 0.22 16 33 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 35 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.12 0.95 8.10 -51.93 -0.42 0.52 16 37 H 0.11 0.82 8.10 -51.93 -0.42 0.40 16 38 H 0.10 0.62 8.14 -51.93 -0.42 0.19 16 39 H 0.10 0.64 8.14 -51.93 -0.42 0.21 16 40 H 0.40 3.52 8.60 -40.82 -0.35 3.17 16 41 H 0.07 0.98 7.99 -51.93 -0.42 0.57 16 42 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 43 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 44 H 0.09 1.45 8.14 -51.93 -0.42 1.03 16 45 H 0.03 0.66 8.03 -51.93 -0.42 0.24 16 46 H 0.07 1.87 7.16 -51.93 -0.37 1.50 16 47 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 48 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 49 H 0.03 0.62 8.10 -51.93 -0.42 0.20 16 LS Contribution 408.55 15.07 6.16 6.16 Total: -1.00 -33.95 408.55 -8.43 -42.38 By element: Atomic # 1 Polarization: 7.21 SS G_CDS: -8.25 Total: -1.04 kcal Atomic # 6 Polarization: 3.83 SS G_CDS: -1.58 Total: 2.26 kcal Atomic # 7 Polarization: -59.79 SS G_CDS: -0.03 Total: -59.83 kcal Atomic # 8 Polarization: -7.25 SS G_CDS: 0.29 Total: -6.96 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -33.95 -8.43 -42.38 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001506641498.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.920 kcal (2) G-P(sol) polarization free energy of solvation -33.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.381 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds