Wall clock time and date at job start Tue Mar 31 2020 19:32:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52994 * 109.47382 * 2 1 4 4 C 1.50705 * 109.47243 * 120.00331 * 2 1 3 5 5 N 1.29947 * 126.28190 * 299.97148 * 4 2 1 6 6 O 1.21301 * 110.24467 * 180.02562 * 5 4 2 7 7 C 1.33638 * 109.81462 * 0.02562 * 6 5 4 8 8 C 1.50699 * 126.55229 * 179.97438 * 7 6 5 9 9 C 1.53001 * 109.46973 * 270.02012 * 8 7 6 10 10 C 1.50708 * 109.47224 * 179.97438 * 9 8 7 11 11 O 1.21283 * 119.99467 * 0.02562 * 10 9 8 12 12 N 1.34771 * 119.99868 * 180.02562 * 10 9 8 13 13 C 1.46506 * 119.99858 * 180.02562 * 12 10 9 14 14 H 1.09004 * 109.46413 * 324.99258 * 13 12 10 15 15 C 1.52996 * 109.47215 * 84.99661 * 13 12 10 16 16 C 1.52994 * 109.47132 * 205.00028 * 13 12 10 17 17 C 1.53940 * 113.74425 * 161.99291 * 16 13 12 18 18 N 1.47813 * 86.03742 * 222.07990 * 17 16 13 19 19 C 1.36939 * 134.45700 * 204.63917 * 18 17 16 20 20 H 1.07993 * 120.00048 * 179.86964 * 19 18 17 21 21 C 1.38812 * 120.00124 * 359.87128 * 19 18 17 22 22 N 1.31624 * 119.99923 * 0.02562 * 21 19 18 23 23 Si 1.86794 * 120.00044 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.47274 * 0.02562 * 23 21 19 25 25 H 1.48502 * 109.46989 * 120.00397 * 23 21 19 26 26 H 1.48500 * 109.47446 * 240.00178 * 23 21 19 27 27 C 1.47581 * 91.04980 * 24.54852 * 18 17 16 28 28 N 1.31124 * 106.89863 * 0.22454 * 7 6 5 29 29 H 1.09000 * 109.46593 * 299.99627 * 1 2 3 30 30 H 1.08999 * 109.47215 * 59.99758 * 1 2 3 31 31 H 1.09001 * 109.46803 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.46882 * 239.99925 * 2 1 3 33 33 H 1.09003 * 109.47722 * 180.02562 * 3 2 1 34 34 H 1.08999 * 109.47143 * 300.00286 * 3 2 1 35 35 H 1.09002 * 109.47173 * 60.00103 * 3 2 1 36 36 H 1.09001 * 109.47337 * 150.01879 * 8 7 6 37 37 H 1.09003 * 109.47512 * 30.01519 * 8 7 6 38 38 H 1.09001 * 109.46770 * 60.00102 * 9 8 7 39 39 H 1.08997 * 109.47248 * 299.99965 * 9 8 7 40 40 H 0.96998 * 120.00512 * 359.97438 * 12 10 9 41 41 H 1.09006 * 109.46879 * 175.81450 * 15 13 12 42 42 H 1.08996 * 109.47166 * 55.80924 * 15 13 12 43 43 H 1.09004 * 109.47115 * 295.80771 * 15 13 12 44 44 H 1.09003 * 112.94389 * 293.58394 * 16 13 12 45 45 H 1.08998 * 113.77360 * 336.34571 * 17 16 13 46 46 H 1.08999 * 113.76957 * 107.74222 * 17 16 13 47 47 H 0.96997 * 119.99980 * 179.97438 * 22 21 19 48 48 H 1.08994 * 113.77118 * 221.14684 * 27 18 17 49 49 H 1.09006 * 113.87070 * 89.76609 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0324 -0.7105 1.2305 5 7 1.7953 -0.3744 2.4631 6 8 2.3422 -1.1472 3.2215 7 6 3.0004 -2.0775 2.5234 8 6 3.8082 -3.2181 3.0869 9 6 5.2588 -2.7705 3.2774 10 6 6.0665 -3.9109 3.8415 11 8 5.5343 -4.9769 4.0683 12 7 7.3801 -3.7462 4.0939 13 6 8.1654 -4.8550 4.6418 14 1 7.5456 -5.4368 5.3241 15 6 8.6472 -5.7519 3.4997 16 6 9.3736 -4.2994 5.3983 17 6 10.0152 -5.3081 6.3681 18 7 10.1193 -4.1768 7.3138 19 6 10.9305 -3.8885 8.3787 20 1 10.8004 -2.9643 8.9219 21 6 11.9201 -4.7842 8.7599 22 7 12.0791 -5.9104 8.0974 23 14 13.0272 -4.3905 10.2120 24 1 12.6467 -3.0730 10.7817 25 1 12.8740 -5.4412 11.2503 26 1 14.4406 -4.3448 9.7589 27 6 9.0000 -3.4823 6.6484 28 7 2.8136 -1.8051 1.2545 29 1 -0.3632 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 3.1301 1.4425 -0.0005 34 1 1.6767 1.9563 -0.8899 35 1 1.6768 1.9563 0.8900 36 1 3.7758 -4.0617 2.3974 37 1 3.3914 -3.5184 4.0483 38 1 5.2911 -1.9269 3.9669 39 1 5.6756 -2.4702 2.3161 40 1 7.8058 -2.8938 3.9122 41 1 9.2926 -6.5341 3.8996 42 1 9.2045 -5.1541 2.7786 43 1 7.7875 -6.2067 3.0075 44 1 10.0906 -3.8006 4.7462 45 1 9.3359 -6.0945 6.6970 46 1 10.9786 -5.6902 6.0307 47 1 12.7708 -6.5361 8.3635 48 1 9.1543 -2.4094 6.5343 49 1 8.0209 -3.7298 7.0586 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001506641498.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:32:05 Heat of formation + Delta-G solvation = 41.121994 kcal Electronic energy + Delta-G solvation = -28191.276929 eV Core-core repulsion = 24157.013562 eV Total energy + Delta-G solvation = -4034.263367 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -46.65239 -41.03252 -39.64791 -37.88640 -36.45904 -35.99427 -34.46342 -34.11686 -32.34794 -31.32897 -29.30803 -28.17133 -27.07748 -26.32920 -25.63166 -25.58872 -23.94913 -22.69868 -21.37676 -20.99585 -20.58577 -19.17217 -18.76155 -18.61342 -17.96200 -17.26699 -16.86004 -16.56000 -16.08542 -15.91221 -15.81808 -15.35645 -15.10177 -14.82362 -14.68653 -14.43728 -14.27225 -13.99092 -13.59670 -13.48749 -13.28710 -13.22571 -13.21453 -13.04182 -12.93853 -12.69056 -12.65659 -12.62478 -12.32725 -12.26751 -12.18302 -12.09963 -11.95687 -11.85025 -11.78110 -11.53788 -11.18918 -11.00596 -10.86606 -10.71753 -9.96420 -8.90141 -7.89955 -5.22946 0.08273 1.15895 1.45901 1.46892 1.56956 1.71894 1.73466 2.28517 2.48000 2.59654 3.02890 3.31002 3.41927 3.61369 3.76649 3.82092 3.96721 4.02475 4.03696 4.06211 4.11896 4.32513 4.33941 4.50461 4.56939 4.62150 4.68485 4.68701 4.71041 4.81085 4.83131 4.83989 4.90035 4.90888 4.95703 4.97820 5.00608 5.05847 5.16125 5.21616 5.27661 5.28126 5.35901 5.56193 5.61810 5.69670 5.95918 6.67848 6.93450 7.12872 7.36167 7.62111 8.57980 9.27239 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.024624 B = 0.001720 C = 0.001663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1136.811215 B =16271.119741 C =16832.650907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.008 4.008 3 C -0.140 4.140 4 C 0.170 3.830 5 N -0.401 5.401 6 O 0.070 5.930 7 C 0.196 3.804 8 C -0.008 4.008 9 C -0.127 4.127 10 C 0.518 3.482 11 O -0.581 6.581 12 N -0.708 5.708 13 C 0.163 3.837 14 H 0.062 0.938 15 C -0.152 4.152 16 C -0.108 4.108 17 C 0.168 3.832 18 N -0.645 5.645 19 C -0.234 4.234 20 H 0.083 0.917 21 C -0.068 4.068 22 N -0.954 5.954 23 Si 0.977 3.023 24 H -0.265 1.265 25 H -0.295 1.295 26 H -0.290 1.290 27 C 0.128 3.872 28 N -0.498 5.498 29 H 0.052 0.948 30 H 0.094 0.906 31 H 0.051 0.949 32 H 0.110 0.890 33 H 0.053 0.947 34 H 0.094 0.906 35 H 0.052 0.948 36 H 0.118 0.882 37 H 0.116 0.884 38 H 0.123 0.877 39 H 0.121 0.879 40 H 0.416 0.584 41 H 0.059 0.941 42 H 0.073 0.927 43 H 0.054 0.946 44 H 0.104 0.896 45 H 0.011 0.989 46 H 0.044 0.956 47 H 0.248 0.752 48 H 0.062 0.938 49 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.193 12.503 -19.772 30.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.028 4.028 3 C -0.198 4.198 4 C -0.102 4.102 5 N -0.111 5.111 6 O 0.013 5.987 7 C -0.024 4.024 8 C -0.047 4.047 9 C -0.168 4.168 10 C 0.306 3.694 11 O -0.461 6.461 12 N -0.360 5.360 13 C 0.057 3.943 14 H 0.081 0.919 15 C -0.211 4.211 16 C -0.128 4.128 17 C 0.042 3.958 18 N -0.372 5.372 19 C -0.363 4.363 20 H 0.101 0.899 21 C -0.261 4.261 22 N -0.603 5.603 23 Si 0.806 3.194 24 H -0.189 1.189 25 H -0.222 1.222 26 H -0.217 1.217 27 C 0.003 3.997 28 N -0.232 5.232 29 H 0.071 0.929 30 H 0.113 0.887 31 H 0.071 0.929 32 H 0.128 0.872 33 H 0.073 0.927 34 H 0.112 0.888 35 H 0.071 0.929 36 H 0.136 0.864 37 H 0.134 0.866 38 H 0.141 0.859 39 H 0.139 0.861 40 H 0.252 0.748 41 H 0.078 0.922 42 H 0.092 0.908 43 H 0.073 0.927 44 H 0.122 0.878 45 H 0.029 0.971 46 H 0.063 0.937 47 H 0.057 0.943 48 H 0.080 0.920 49 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -20.763 12.363 -19.580 31.101 hybrid contribution 1.025 -0.224 1.333 1.696 sum -19.737 12.139 -18.247 29.493 Atomic orbital electron populations 1.21831 0.92052 1.02357 1.03650 1.19790 0.97084 0.95866 0.90088 1.21827 1.01157 0.93234 1.03617 1.26426 0.95950 0.92641 0.95232 1.74595 1.18506 1.14617 1.03371 1.85298 1.47970 1.29976 1.35424 1.29063 0.94004 0.93644 0.85699 1.19996 0.91173 0.89491 1.04062 1.21580 0.92521 0.97520 1.05152 1.20790 0.82256 0.89287 0.77116 1.90725 1.71422 1.29825 1.54163 1.45929 1.08978 1.16384 1.64687 1.20712 0.90895 0.87971 0.94732 0.91933 1.22045 1.01158 0.99720 0.98152 1.23432 0.96444 0.98086 0.94850 1.22151 0.96856 0.90131 0.86629 1.46437 1.35052 1.20811 1.34866 1.19475 1.08482 1.02794 1.05526 0.89889 1.25618 1.01354 0.96668 1.02482 1.70005 1.35883 1.11156 1.43224 0.85027 0.78244 0.77543 0.78618 1.18933 1.22224 1.21716 1.22688 0.90175 0.96920 0.89907 1.71956 1.17909 1.14677 1.18666 0.92873 0.88687 0.92947 0.87155 0.92739 0.88753 0.92882 0.86409 0.86561 0.85932 0.86058 0.74777 0.92209 0.90836 0.92698 0.87801 0.97077 0.93710 0.94288 0.92006 0.94756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.48 9.18 71.98 0.66 -0.82 16 2 C -0.01 -0.10 3.39 -11.54 -0.04 -0.14 16 3 C -0.14 -1.44 9.18 71.98 0.66 -0.78 16 4 C 0.17 3.24 6.72 138.46 0.93 4.17 16 5 N -0.40 -8.55 12.16 -60.34 -0.73 -9.28 16 6 O 0.07 1.38 11.31 74.88 0.85 2.22 16 7 C 0.20 3.37 7.77 88.38 0.69 4.05 16 8 C -0.01 -0.11 5.13 29.85 0.15 0.04 16 9 C -0.13 -1.51 5.68 29.85 0.17 -1.34 16 10 C 0.52 10.43 7.79 87.66 0.68 11.11 16 11 O -0.58 -16.65 15.64 -3.04 -0.05 -16.70 16 12 N -0.71 -14.00 4.95 -442.53 -2.19 -16.19 16 13 C 0.16 4.43 2.29 44.99 0.10 4.53 16 14 H 0.06 2.08 7.49 -2.38 -0.02 2.06 16 15 C -0.15 -3.81 9.46 71.98 0.68 -3.13 16 16 C -0.11 -3.56 3.35 -10.14 -0.03 -3.59 16 17 C 0.17 7.79 6.90 86.44 0.60 8.38 16 18 N -0.65 -32.61 3.70 -716.16 -2.65 -35.26 16 19 C -0.23 -13.12 10.70 84.03 0.90 -12.22 16 20 H 0.08 4.44 7.83 -2.91 -0.02 4.42 16 21 C -0.07 -3.90 5.50 84.86 0.47 -3.43 16 22 N -0.95 -57.61 11.39 21.65 0.25 -57.37 16 23 Si 0.98 45.74 29.55 68.60 2.03 47.77 16 24 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 25 H -0.29 -13.91 7.11 99.48 0.71 -13.20 16 26 H -0.29 -13.47 7.11 99.48 0.71 -12.77 16 27 C 0.13 4.78 8.38 86.49 0.72 5.51 16 28 N -0.50 -9.80 11.55 -303.23 -3.50 -13.31 16 29 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 30 H 0.09 0.54 8.14 -2.39 -0.02 0.52 16 31 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 32 H 0.11 1.20 8.14 -2.39 -0.02 1.18 16 33 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 34 H 0.09 0.53 8.14 -2.39 -0.02 0.51 16 35 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 36 H 0.12 1.70 8.10 -2.39 -0.02 1.68 16 37 H 0.12 1.53 8.10 -2.39 -0.02 1.51 16 38 H 0.12 1.04 8.14 -2.39 -0.02 1.02 16 39 H 0.12 1.06 8.14 -2.39 -0.02 1.04 16 40 H 0.42 5.77 8.60 -92.71 -0.80 4.97 16 41 H 0.06 1.63 7.99 -2.38 -0.02 1.61 16 42 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 43 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 44 H 0.10 3.16 8.14 -2.39 -0.02 3.14 16 45 H 0.01 0.56 8.03 -2.39 -0.02 0.54 16 46 H 0.04 2.32 7.16 -2.39 -0.02 2.31 16 47 H 0.25 14.54 8.31 -92.71 -0.77 13.77 16 48 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 49 H 0.03 1.30 8.10 -2.38 -0.02 1.28 16 Total: -1.00 -75.15 408.55 1.48 -73.67 By element: Atomic # 1 Polarization: 11.97 SS G_CDS: 0.15 Total: 12.11 kcal Atomic # 6 Polarization: 4.99 SS G_CDS: 7.34 Total: 12.34 kcal Atomic # 7 Polarization: -122.57 SS G_CDS: -8.83 Total: -131.41 kcal Atomic # 8 Polarization: -15.27 SS G_CDS: 0.80 Total: -14.47 kcal Atomic # 14 Polarization: 45.74 SS G_CDS: 2.03 Total: 47.77 kcal Total: -75.15 1.48 -73.67 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001506641498.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.789 kcal (2) G-P(sol) polarization free energy of solvation -75.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.667 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds