Wall clock time and date at job start Tue Mar 31 2020 19:27:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35356 * 116.99863 * 2 1 4 4 C 1.38995 * 126.40184 * 93.61373 * 3 2 1 5 5 C 1.46917 * 126.50019 * 359.95657 * 4 3 2 6 6 O 1.21675 * 119.99752 * 38.92893 * 5 4 3 7 7 N 1.34771 * 120.00447 * 218.92468 * 5 4 3 8 8 C 1.46926 * 120.62676 * 5.25972 * 7 5 4 9 9 C 1.53617 * 108.54719 * 126.36447 * 8 7 5 10 10 C 1.53040 * 109.24174 * 54.85350 * 9 8 7 11 11 C 1.53004 * 109.46137 * 178.49035 * 10 9 8 12 12 H 1.08996 * 109.46937 * 60.06868 * 11 10 9 13 13 C 1.53007 * 109.47160 * 180.02562 * 11 10 9 14 14 N 1.46500 * 109.47271 * 300.07123 * 11 10 9 15 15 C 1.36938 * 120.00025 * 155.00217 * 14 11 10 16 16 H 1.08003 * 119.99848 * 359.97438 * 15 14 11 17 17 C 1.38803 * 120.00037 * 179.97438 * 15 14 11 18 18 N 1.31631 * 120.00071 * 359.97438 * 17 15 14 19 19 Si 1.86802 * 120.00211 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.46867 * 90.00024 * 19 17 15 21 21 H 1.48503 * 109.47270 * 210.00181 * 19 17 15 22 22 H 1.48497 * 109.47062 * 330.00079 * 19 17 15 23 23 C 1.53036 * 109.53986 * 298.51185 * 10 9 8 24 24 C 1.46923 * 120.63442 * 185.53235 * 7 5 4 25 25 C 1.41463 * 107.00200 * 180.21533 * 4 3 2 26 26 N 1.30311 * 108.13933 * 359.59372 * 25 4 3 27 27 N 1.34650 * 126.40513 * 273.58933 * 3 2 1 28 28 C 1.46500 * 125.74460 * 0.02562 * 27 3 2 29 29 H 1.09000 * 109.47498 * 64.95587 * 1 2 3 30 30 H 1.09000 * 109.47330 * 184.96061 * 1 2 3 31 31 H 1.09004 * 109.47042 * 304.95950 * 1 2 3 32 32 H 1.09009 * 109.58643 * 246.19697 * 8 7 5 33 33 H 1.09000 * 109.58935 * 6.62160 * 8 7 5 34 34 H 1.09005 * 109.63780 * 294.86634 * 9 8 7 35 35 H 1.09006 * 109.46439 * 174.74120 * 9 8 7 36 36 H 1.08998 * 109.45926 * 58.53473 * 10 9 8 37 37 H 1.08994 * 109.46756 * 60.00175 * 13 11 10 38 38 H 1.08991 * 109.46882 * 180.02562 * 13 11 10 39 39 H 1.09005 * 109.46654 * 300.00027 * 13 11 10 40 40 H 0.96995 * 119.99934 * 334.99381 * 14 11 10 41 41 H 0.96997 * 119.99713 * 180.02562 * 18 17 15 42 42 H 1.08996 * 109.49689 * 301.41545 * 23 10 9 43 43 H 1.09003 * 109.50247 * 181.31148 * 23 10 9 44 44 H 1.08997 * 109.58799 * 353.37820 * 24 7 5 45 45 H 1.09002 * 109.58705 * 113.65952 * 24 7 5 46 46 H 1.08003 * 125.92864 * 179.75538 * 25 4 3 47 47 H 1.08997 * 109.47810 * 84.88349 * 28 27 3 48 48 H 1.09002 * 109.47100 * 204.88807 * 28 27 3 49 49 H 1.09003 * 109.47197 * 324.88144 * 28 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0435 1.2060 0.0000 4 6 2.4808 1.9090 1.1165 5 6 2.3628 1.4844 2.5180 6 8 2.5330 0.3171 2.8164 7 7 2.0661 2.3876 3.4732 8 6 1.7450 3.7763 3.1164 9 6 0.3943 4.1436 3.7491 10 6 0.4546 3.8800 5.2554 11 6 -0.8759 4.2796 5.8966 12 1 -1.6818 3.6914 5.4577 13 6 -0.8157 4.0167 7.4027 14 7 -1.1248 5.7034 5.6581 15 6 -2.4070 6.1842 5.6605 16 1 -3.2348 5.5136 5.8379 17 6 -2.6428 7.5334 5.4351 18 7 -1.6338 8.3508 5.2195 19 14 -4.3919 8.1891 5.4377 20 1 -4.7610 8.6091 6.8135 21 1 -4.4849 9.3549 4.5225 22 1 -5.3203 7.1246 4.9793 23 6 0.7142 2.3925 5.5047 24 6 2.0633 2.0040 4.8915 25 6 3.0556 3.1136 0.6479 26 7 2.9747 3.1227 -0.6527 27 7 2.3458 1.9489 -1.0816 28 6 2.0637 1.5886 -2.4733 29 1 -0.3634 0.4350 -0.9310 30 1 -0.3634 -1.0238 0.0889 31 1 -0.3633 0.5889 0.8423 32 1 2.5220 4.4401 3.4959 33 1 1.6796 3.8693 2.0323 34 1 -0.3953 3.5372 3.3051 35 1 0.1854 5.1988 3.5725 36 1 1.2603 4.4679 5.6950 37 1 -0.0097 4.6043 7.8420 38 1 -1.7636 4.3009 7.8593 39 1 -0.6309 2.9570 7.5794 40 1 -0.3814 6.3056 5.4986 41 1 -1.7986 9.2936 5.0623 42 1 -0.0782 1.8027 5.0441 43 1 0.7339 2.2014 6.5777 44 1 2.2079 0.9272 4.9790 45 1 2.8672 2.5242 5.4123 46 1 3.4888 3.8898 1.2614 47 1 1.0457 1.8848 -2.7262 48 1 2.7654 2.1019 -3.1309 49 1 2.1703 0.5111 -2.5985 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001567632914.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:27:35 Heat of formation + Delta-G solvation = 2.070069 kcal Electronic energy + Delta-G solvation = -30236.111109 eV Core-core repulsion = 26200.154323 eV Total energy + Delta-G solvation = -4035.956786 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.73610 -40.87035 -39.28225 -38.98750 -36.79719 -34.80843 -34.28979 -32.50066 -32.00648 -31.03192 -29.94847 -28.46646 -27.75100 -26.67152 -25.62257 -24.06991 -23.56453 -22.26008 -22.01122 -21.10023 -20.38688 -19.16546 -18.76085 -18.06581 -17.57214 -17.09896 -16.76275 -16.57111 -16.08734 -15.69275 -15.59983 -15.53890 -15.39609 -15.10518 -14.83404 -14.60130 -14.53125 -14.15881 -14.01696 -13.62900 -13.53663 -13.51104 -13.29831 -13.00724 -12.89462 -12.82345 -12.74157 -12.47115 -12.26539 -12.16084 -12.07535 -11.80221 -11.47349 -11.38804 -11.30259 -11.14439 -10.93117 -10.82149 -10.47217 -9.83604 -9.50210 -8.91612 -7.88762 -5.14512 0.16016 1.06400 1.07292 1.48505 1.49137 1.56946 1.92656 2.16272 2.50678 2.59477 3.32697 3.44884 3.75080 3.81970 3.87044 3.97412 4.00815 4.11651 4.18302 4.22291 4.27229 4.30710 4.35698 4.43744 4.46353 4.54404 4.58488 4.59861 4.61677 4.65449 4.84791 4.86002 4.94273 4.98552 5.02515 5.09705 5.12815 5.18334 5.27790 5.31550 5.42121 5.52721 5.57065 5.67475 5.73579 6.21002 6.34449 6.36955 6.43699 7.20035 7.41048 8.19466 8.42960 9.34390 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.012772 B = 0.003026 C = 0.002724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2191.738074 B = 9251.827297 C =10276.222310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.314 6.314 3 C 0.306 3.694 4 C -0.316 4.316 5 C 0.596 3.404 6 O -0.581 6.581 7 N -0.599 5.599 8 C 0.109 3.891 9 C -0.114 4.114 10 C -0.079 4.079 11 C 0.173 3.827 12 H 0.031 0.969 13 C -0.158 4.158 14 N -0.731 5.731 15 C -0.231 4.231 16 H 0.068 0.932 17 C -0.072 4.072 18 N -0.966 5.966 19 Si 0.962 3.038 20 H -0.291 1.291 21 H -0.297 1.297 22 H -0.273 1.273 23 C -0.116 4.116 24 C 0.115 3.885 25 C 0.096 3.904 26 N -0.291 5.291 27 N -0.367 5.367 28 C 0.083 3.917 29 H 0.073 0.927 30 H 0.128 0.872 31 H 0.042 0.958 32 H 0.092 0.908 33 H 0.094 0.906 34 H 0.045 0.955 35 H 0.064 0.936 36 H 0.073 0.927 37 H 0.045 0.955 38 H 0.028 0.972 39 H 0.073 0.927 40 H 0.374 0.626 41 H 0.249 0.751 42 H 0.054 0.946 43 H 0.094 0.906 44 H 0.083 0.917 45 H 0.086 0.914 46 H 0.220 0.780 47 H 0.096 0.904 48 H 0.111 0.889 49 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.966 -15.830 -12.400 22.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.224 6.224 3 C 0.132 3.868 4 C -0.332 4.332 5 C 0.386 3.614 6 O -0.462 6.462 7 N -0.331 5.331 8 C -0.013 4.013 9 C -0.152 4.152 10 C -0.099 4.099 11 C 0.065 3.935 12 H 0.049 0.951 13 C -0.217 4.217 14 N -0.371 5.371 15 C -0.363 4.363 16 H 0.086 0.914 17 C -0.265 4.265 18 N -0.617 5.617 19 Si 0.792 3.208 20 H -0.219 1.219 21 H -0.223 1.223 22 H -0.199 1.199 23 C -0.154 4.154 24 C -0.007 4.007 25 C -0.090 4.090 26 N -0.114 5.114 27 N -0.156 5.156 28 C -0.056 4.056 29 H 0.092 0.908 30 H 0.146 0.854 31 H 0.061 0.939 32 H 0.110 0.890 33 H 0.112 0.888 34 H 0.064 0.936 35 H 0.083 0.917 36 H 0.092 0.908 37 H 0.064 0.936 38 H 0.048 0.952 39 H 0.091 0.909 40 H 0.207 0.793 41 H 0.058 0.942 42 H 0.073 0.927 43 H 0.113 0.887 44 H 0.101 0.899 45 H 0.105 0.895 46 H 0.236 0.764 47 H 0.114 0.886 48 H 0.129 0.871 49 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 9.116 -16.099 -13.437 22.866 hybrid contribution -1.301 0.646 0.745 1.633 sum 7.814 -15.453 -12.692 21.470 Atomic orbital electron populations 1.23409 0.75132 1.05942 1.01911 1.86018 1.22863 1.20425 1.93080 1.19391 0.95791 0.84787 0.86866 1.19990 1.20498 0.99828 0.92857 1.17253 0.75608 0.84350 0.84221 1.90750 1.53355 1.19001 1.83118 1.47988 1.67668 1.10778 1.06647 1.22157 0.96896 0.81014 1.01261 1.21814 0.96448 1.01419 0.95562 1.21259 0.97248 0.96296 0.95069 1.20428 0.95053 0.84509 0.93521 0.95103 1.22359 1.00353 1.00867 0.98152 1.42553 1.04623 1.04441 1.85465 1.19528 0.86248 0.92081 1.38461 0.91421 1.25379 1.00301 0.96721 1.04074 1.69790 1.30677 1.03480 1.57749 0.85305 0.80905 0.77642 0.76928 1.21861 1.22342 1.19858 1.21912 0.96681 0.94815 1.02038 1.21681 0.97956 1.01634 0.79397 1.24313 0.96936 0.95971 0.91756 1.77213 1.19127 1.01512 1.13569 1.49226 1.44663 1.13859 1.07846 1.22378 1.04372 1.03479 0.75417 0.90836 0.85413 0.93917 0.89029 0.88838 0.93600 0.91696 0.90840 0.93610 0.95240 0.90855 0.79341 0.94227 0.92691 0.88729 0.89881 0.89535 0.76392 0.88577 0.87085 0.87770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 11.13 113.37 1.26 1.75 16 2 O -0.31 -7.39 10.46 -86.47 -0.90 -8.29 16 3 C 0.31 7.52 7.00 84.44 0.59 8.11 16 4 C -0.32 -8.28 5.28 -20.03 -0.11 -8.39 16 5 C 0.60 17.57 7.56 86.52 0.65 18.22 16 6 O -0.58 -21.03 16.50 -4.27 -0.07 -21.10 16 7 N -0.60 -15.15 2.97 -822.50 -2.44 -17.59 16 8 C 0.11 2.54 5.45 86.51 0.47 3.01 16 9 C -0.11 -3.39 5.24 30.82 0.16 -3.23 16 10 C -0.08 -2.32 1.78 -10.77 -0.02 -2.34 16 11 C 0.17 6.41 2.47 45.00 0.11 6.52 16 12 H 0.03 1.22 8.08 -2.39 -0.02 1.20 16 13 C -0.16 -5.28 9.14 71.98 0.66 -4.62 16 14 N -0.73 -34.82 4.41 -322.93 -1.42 -36.25 16 15 C -0.23 -12.47 9.93 84.03 0.83 -11.64 16 16 H 0.07 3.59 7.83 -2.91 -0.02 3.57 16 17 C -0.07 -4.06 5.50 84.86 0.47 -3.60 16 18 N -0.97 -57.43 13.06 21.65 0.28 -57.15 16 19 Si 0.96 45.63 29.55 68.60 2.03 47.66 16 20 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 21 H -0.30 -14.19 7.11 99.48 0.71 -13.48 16 22 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 23 C -0.12 -2.80 5.04 30.67 0.15 -2.65 16 24 C 0.12 2.69 6.44 86.37 0.56 3.24 16 25 C 0.10 2.11 9.59 85.71 0.82 2.93 16 26 N -0.29 -6.64 12.48 -56.23 -0.70 -7.34 16 27 N -0.37 -7.53 3.99 -479.80 -1.91 -9.45 16 28 C 0.08 0.88 11.38 127.77 1.45 2.34 16 29 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 30 H 0.13 1.48 8.14 -2.39 -0.02 1.46 16 31 H 0.04 0.82 8.14 -2.39 -0.02 0.80 16 32 H 0.09 1.80 8.14 -2.38 -0.02 1.78 16 33 H 0.09 2.07 4.66 -2.39 -0.01 2.06 16 34 H 0.05 1.47 8.14 -2.38 -0.02 1.45 16 35 H 0.06 2.31 7.40 -2.38 -0.02 2.29 16 36 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 37 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 38 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 39 H 0.07 1.94 6.40 -2.38 -0.02 1.92 16 40 H 0.37 19.03 7.58 -92.71 -0.70 18.33 16 41 H 0.25 14.47 8.31 -92.71 -0.77 13.70 16 42 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 43 H 0.09 1.99 6.36 -2.39 -0.02 1.97 16 44 H 0.08 2.10 6.99 -2.39 -0.02 2.08 16 45 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 46 H 0.22 3.47 7.21 -2.91 -0.02 3.44 16 47 H 0.10 0.71 8.14 -2.39 -0.02 0.69 16 48 H 0.11 0.91 8.14 -2.39 -0.02 0.89 16 49 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 Total: -1.00 -74.11 394.33 3.18 -70.93 By element: Atomic # 1 Polarization: 28.66 SS G_CDS: 0.26 Total: 28.92 kcal Atomic # 6 Polarization: 1.59 SS G_CDS: 8.07 Total: 9.66 kcal Atomic # 7 Polarization: -121.58 SS G_CDS: -6.20 Total: -127.78 kcal Atomic # 8 Polarization: -28.42 SS G_CDS: -0.97 Total: -29.39 kcal Atomic # 14 Polarization: 45.63 SS G_CDS: 2.03 Total: 47.66 kcal Total: -74.11 3.18 -70.93 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567632914.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.000 kcal (2) G-P(sol) polarization free energy of solvation -74.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.930 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds