Wall clock time and date at job start Tue Mar 31 2020 20:40:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08995 * 109.47686 * 2 1 4 4 C 1.53003 * 109.46780 * 120.00263 * 2 1 3 5 5 C 1.53003 * 109.47017 * 184.99762 * 4 2 1 6 6 C 1.52996 * 109.47301 * 179.97438 * 5 4 2 7 7 N 1.46498 * 109.47059 * 179.97438 * 6 5 4 8 8 C 1.36943 * 119.99752 * 179.72430 * 7 6 5 9 9 H 1.08002 * 119.99793 * 0.27665 * 8 7 6 10 10 C 1.38811 * 120.00012 * 180.27737 * 8 7 6 11 11 N 1.31624 * 119.99698 * 0.02562 * 10 8 7 12 12 Si 1.86795 * 120.00072 * 180.02562 * 10 8 7 13 13 H 1.48495 * 109.47159 * 0.02562 * 12 10 8 14 14 H 1.48505 * 109.47290 * 120.00044 * 12 10 8 15 15 H 1.48503 * 109.47163 * 240.00049 * 12 10 8 16 16 N 1.46503 * 109.46874 * 239.99666 * 2 1 3 17 17 C 1.34771 * 119.99673 * 85.00531 * 16 2 1 18 18 O 1.21601 * 120.00319 * 359.97438 * 17 16 2 19 19 C 1.47433 * 119.99889 * 180.02562 * 17 16 2 20 20 C 1.38038 * 126.41346 * 359.67996 * 19 17 16 21 21 N 1.34258 * 107.41687 * 179.87355 * 20 19 17 22 22 H 0.97002 * 125.75647 * 180.14636 * 21 20 19 23 23 N 1.39931 * 108.49303 * 0.39821 * 21 20 19 24 24 C 1.30451 * 108.89526 * 359.75095 * 23 21 20 25 25 C 1.50699 * 125.99002 * 179.97438 * 24 23 21 26 26 H 1.08994 * 109.82538 * 195.74150 * 25 24 23 27 27 C 1.54385 * 109.83011 * 74.85195 * 25 24 23 28 28 C 1.55451 * 102.18788 * 219.18396 * 27 25 24 29 29 C 1.54948 * 100.98950 * 34.03835 * 28 27 25 30 30 O 1.43238 * 109.83070 * 316.62841 * 25 24 23 31 31 H 1.09006 * 109.47008 * 300.00639 * 1 2 3 32 32 H 1.09001 * 109.47021 * 59.99597 * 1 2 3 33 33 H 1.08995 * 109.47686 * 179.97438 * 1 2 3 34 34 H 1.08990 * 109.47421 * 64.99768 * 4 2 1 35 35 H 1.09002 * 109.47073 * 304.99053 * 4 2 1 36 36 H 1.09004 * 109.47038 * 59.99615 * 5 4 2 37 37 H 1.09000 * 109.46939 * 300.00268 * 5 4 2 38 38 H 1.09004 * 109.47066 * 60.00027 * 6 5 4 39 39 H 1.08994 * 109.46974 * 300.00175 * 6 5 4 40 40 H 0.97001 * 120.00384 * 0.02562 * 7 6 5 41 41 H 0.96999 * 119.99739 * 180.02562 * 11 10 8 42 42 H 0.97002 * 119.99845 * 265.00354 * 16 2 1 43 43 H 1.08004 * 126.29540 * 0.02955 * 20 19 17 44 44 H 1.09001 * 110.84935 * 337.32264 * 27 25 24 45 45 H 1.09007 * 110.84707 * 100.93930 * 27 25 24 46 46 H 1.08994 * 111.05663 * 276.12329 * 28 27 25 47 47 H 1.08998 * 111.18335 * 152.00802 * 28 27 25 48 48 H 1.08988 * 110.31061 * 204.68891 * 29 28 27 49 49 H 1.09001 * 110.39035 * 82.56149 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 3.5648 -0.6135 1.3137 6 6 4.0747 -1.3342 2.5633 7 7 5.5348 -1.2314 2.6246 8 6 6.2180 -1.8005 3.6660 9 1 5.6808 -2.3289 4.4397 10 6 7.6010 -1.6982 3.7273 11 7 8.2556 -1.0537 2.7846 12 14 8.5331 -2.4751 5.1474 13 1 7.5728 -3.1368 6.0667 14 1 9.4880 -3.4830 4.6205 15 1 9.2796 -1.4235 5.8838 16 7 2.0183 -0.6907 -1.1962 17 6 2.1470 -0.0184 -2.3571 18 8 1.8575 1.1614 -2.4118 19 6 2.6379 -0.7135 -3.5610 20 6 3.0075 -2.0407 -3.6474 21 7 3.3894 -2.2699 -4.9140 22 1 3.6994 -3.1182 -5.2679 23 7 3.2703 -1.0772 -5.6361 24 6 2.8240 -0.1445 -4.8408 25 6 2.5547 1.2888 -5.2203 26 1 2.4607 1.8979 -4.3213 27 6 1.2556 1.3757 -6.0499 28 6 1.6203 2.4429 -7.1199 29 6 3.1261 2.1457 -7.3322 30 8 3.6240 1.7852 -6.0339 31 1 -0.3633 0.5140 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3634 -1.0276 -0.0005 34 1 1.7515 -1.7715 1.2056 35 1 1.6054 -0.2617 2.1370 36 1 3.8532 0.4368 1.3574 37 1 3.9993 -1.0729 0.4260 38 1 3.7863 -2.3845 2.5200 39 1 3.6401 -0.8743 3.4507 40 1 6.0172 -0.7565 1.9299 41 1 9.2220 -0.9825 2.8271 42 1 2.2489 -1.6319 -1.1526 43 1 2.9900 -2.7628 -2.8445 44 1 1.0300 0.4179 -6.5189 45 1 0.4228 1.7123 -5.4325 46 1 1.4694 3.4512 -6.7345 47 1 1.0558 2.2877 -8.0393 48 1 3.6387 3.0341 -7.7008 49 1 3.2552 1.3183 -8.0300 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001571301627.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:40:28 Heat of formation + Delta-G solvation = -14.159753 kcal Electronic energy + Delta-G solvation = -28903.704440 eV Core-core repulsion = 24867.043876 eV Total energy + Delta-G solvation = -4036.660563 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.74245 -39.44965 -39.31290 -36.66916 -34.81622 -32.80885 -32.65114 -32.15647 -31.53085 -30.02582 -29.25898 -28.86985 -25.66974 -23.77314 -23.70200 -22.82033 -21.94187 -21.18169 -20.77895 -20.30617 -19.84962 -18.62258 -17.01153 -16.75753 -16.67677 -16.26228 -16.04932 -15.43655 -15.04144 -14.69886 -14.52781 -14.44084 -14.01799 -13.80330 -13.70074 -13.59772 -13.42241 -13.11272 -12.97441 -12.64401 -12.18642 -12.08654 -11.99528 -11.86648 -11.50988 -11.30025 -11.20073 -11.13706 -11.10639 -10.86403 -10.78953 -10.44250 -10.38293 -10.05400 -9.97551 -9.90324 -9.67861 -9.54643 -9.19709 -8.92028 -8.85548 -6.89972 -5.74781 -3.03592 1.26896 1.88034 2.41333 3.19057 3.34506 3.43636 3.48855 3.51532 3.79889 4.08803 4.26639 4.42609 4.57516 4.65390 4.66357 4.76957 4.99100 5.04444 5.05819 5.13199 5.17844 5.19422 5.40170 5.44859 5.45851 5.50774 5.58711 5.59207 5.61787 5.66138 5.74328 5.82270 5.95564 5.99263 6.09556 6.10173 6.16428 6.24103 6.38126 6.42919 6.54125 6.79100 6.84697 6.88745 6.91738 7.26346 7.54546 7.71285 8.26822 8.44253 9.54965 10.14473 10.48540 11.48185 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.013160 B = 0.002294 C = 0.002124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2127.137190 B =12203.069862 C =13179.711798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.143 3.857 3 H 0.091 0.909 4 C -0.123 4.123 5 C -0.126 4.126 6 C 0.153 3.847 7 N -0.735 5.735 8 C -0.239 4.239 9 H 0.070 0.930 10 C -0.016 4.016 11 N -0.933 5.933 12 Si 0.907 3.093 13 H -0.280 1.280 14 H -0.292 1.292 15 H -0.291 1.291 16 N -0.718 5.718 17 C 0.596 3.404 18 O -0.544 6.544 19 C -0.280 4.280 20 C 0.108 3.892 21 N -0.460 5.460 22 H 0.445 0.555 23 N -0.279 5.279 24 C 0.122 3.878 25 C 0.152 3.848 26 H 0.129 0.871 27 C -0.140 4.140 28 C -0.155 4.155 29 C 0.049 3.951 30 O -0.367 6.367 31 H 0.065 0.935 32 H 0.058 0.942 33 H 0.054 0.946 34 H 0.066 0.934 35 H 0.079 0.921 36 H 0.062 0.938 37 H 0.060 0.940 38 H 0.016 0.984 39 H 0.017 0.983 40 H 0.383 0.617 41 H 0.254 0.746 42 H 0.397 0.603 43 H 0.188 0.812 44 H 0.076 0.924 45 H 0.089 0.911 46 H 0.081 0.919 47 H 0.083 0.917 48 H 0.086 0.914 49 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.334 0.185 -19.863 27.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.039 3.961 3 H 0.109 0.891 4 C -0.161 4.161 5 C -0.164 4.164 6 C 0.025 3.975 7 N -0.379 5.379 8 C -0.370 4.370 9 H 0.088 0.912 10 C -0.212 4.212 11 N -0.582 5.582 12 Si 0.738 3.262 13 H -0.206 1.206 14 H -0.219 1.219 15 H -0.218 1.218 16 N -0.369 5.369 17 C 0.384 3.616 18 O -0.422 6.422 19 C -0.295 4.295 20 C -0.045 4.045 21 N -0.164 5.164 22 H 0.290 0.710 23 N -0.102 5.102 24 C -0.047 4.047 25 C 0.092 3.908 26 H 0.146 0.854 27 C -0.179 4.179 28 C -0.193 4.193 29 C -0.027 4.027 30 O -0.285 6.285 31 H 0.084 0.916 32 H 0.078 0.922 33 H 0.073 0.927 34 H 0.085 0.915 35 H 0.097 0.903 36 H 0.081 0.919 37 H 0.079 0.921 38 H 0.033 0.967 39 H 0.035 0.965 40 H 0.217 0.783 41 H 0.064 0.936 42 H 0.231 0.769 43 H 0.205 0.795 44 H 0.094 0.906 45 H 0.107 0.893 46 H 0.100 0.900 47 H 0.101 0.899 48 H 0.104 0.896 49 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -18.917 0.692 -20.845 28.157 hybrid contribution 0.720 -1.358 1.220 1.962 sum -18.197 -0.666 -19.624 26.771 Atomic orbital electron populations 1.22170 0.95500 1.01887 1.02419 1.21037 0.93518 0.97913 0.83669 0.89138 1.21851 0.96869 1.00685 0.96695 1.21734 0.93645 1.01559 0.99419 1.20648 0.86170 0.96372 0.94281 1.42403 1.00238 1.66430 1.28822 1.19286 0.89476 1.27114 1.01129 0.91175 1.24765 0.96498 1.01287 0.98658 1.69679 1.07157 1.47013 1.34335 0.86118 0.79891 0.78472 0.81724 1.20574 1.21905 1.21841 1.45905 1.67695 1.13809 1.09535 1.17179 0.76633 0.85952 0.81836 1.90700 1.51317 1.15368 1.84840 1.20242 1.19497 0.93948 0.95847 1.23190 0.95260 0.97183 0.88901 1.46190 1.51119 1.11692 1.07427 0.71047 1.77185 1.23338 0.90441 1.19211 1.22698 0.95536 0.96110 0.90345 1.21452 0.86307 0.86781 0.96248 0.85350 1.23135 0.97554 0.99971 0.97197 1.23308 0.96562 0.99895 0.99500 1.23395 0.93394 0.99929 0.85992 1.88529 1.32736 1.83187 1.24061 0.91603 0.92249 0.92662 0.91526 0.90272 0.91878 0.92082 0.96661 0.96520 0.78313 0.93565 0.76932 0.79488 0.90551 0.89250 0.89997 0.89858 0.89611 0.92158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.52 9.48 37.16 0.35 -1.17 16 2 C 0.14 1.57 2.57 -67.93 -0.17 1.40 16 3 H 0.09 1.19 7.58 -51.93 -0.39 0.80 16 4 C -0.12 -1.39 4.75 -26.73 -0.13 -1.51 16 5 C -0.13 -1.95 5.22 -26.73 -0.14 -2.09 16 6 C 0.15 3.03 6.26 -4.04 -0.03 3.00 16 7 N -0.73 -18.97 5.60 -59.91 -0.34 -19.31 16 8 C -0.24 -6.79 9.99 -15.06 -0.15 -6.94 16 9 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 10 C -0.02 -0.48 5.50 -17.43 -0.10 -0.57 16 11 N -0.93 -28.77 13.06 55.49 0.72 -28.04 16 12 Si 0.91 22.62 29.55 -169.99 -5.02 17.59 16 13 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 14 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 15 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 16 N -0.72 -7.59 4.52 -54.88 -0.25 -7.83 16 17 C 0.60 7.68 7.78 -12.52 -0.10 7.58 16 18 O -0.54 -8.52 14.33 5.28 0.08 -8.44 16 19 C -0.28 -3.30 6.13 -105.07 -0.64 -3.94 16 20 C 0.11 0.90 11.52 -16.56 -0.19 0.71 16 21 N -0.46 -3.92 7.29 30.85 0.22 -3.69 16 22 H 0.44 2.18 8.96 -182.72 -1.64 0.54 16 23 N -0.28 -3.41 12.63 33.90 0.43 -2.98 16 24 C 0.12 1.58 6.02 -82.02 -0.49 1.08 16 25 C 0.15 1.90 3.80 -27.16 -0.10 1.80 16 26 H 0.13 1.81 5.92 -51.93 -0.31 1.50 16 27 C -0.14 -1.32 6.55 -24.70 -0.16 -1.48 16 28 C -0.15 -1.18 7.16 -24.40 -0.17 -1.36 16 29 C 0.05 0.47 7.78 38.19 0.30 0.76 16 30 O -0.37 -4.94 11.00 -35.23 -0.39 -5.33 16 31 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 33 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 35 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 37 H 0.06 0.95 7.75 -51.93 -0.40 0.55 16 38 H 0.02 0.30 8.14 -51.93 -0.42 -0.12 16 39 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 40 H 0.38 10.48 7.67 -40.82 -0.31 10.17 16 41 H 0.25 7.56 8.31 -40.82 -0.34 7.22 16 42 H 0.40 3.25 7.53 -40.82 -0.31 2.95 16 43 H 0.19 0.80 7.46 -52.48 -0.39 0.41 16 44 H 0.08 0.72 7.84 -51.93 -0.41 0.31 16 45 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 46 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 47 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 48 H 0.09 0.67 8.14 -51.94 -0.42 0.25 16 49 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 LS Contribution 402.51 15.07 6.07 6.07 Total: -1.00 -36.82 402.51 -9.61 -46.42 By element: Atomic # 1 Polarization: 17.48 SS G_CDS: -9.20 Total: 8.27 kcal Atomic # 6 Polarization: -0.79 SS G_CDS: -1.93 Total: -2.72 kcal Atomic # 7 Polarization: -62.66 SS G_CDS: 0.79 Total: -61.86 kcal Atomic # 8 Polarization: -13.46 SS G_CDS: -0.31 Total: -13.77 kcal Atomic # 14 Polarization: 22.62 SS G_CDS: -5.02 Total: 17.59 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -36.82 -9.61 -46.42 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571301627.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.264 kcal (2) G-P(sol) polarization free energy of solvation -36.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.424 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds