Wall clock time and date at job start Tue Mar 31 2020 20:40:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08995 * 109.47686 * 2 1 4 4 C 1.53003 * 109.46780 * 120.00263 * 2 1 3 5 5 C 1.53003 * 109.47017 * 184.99762 * 4 2 1 6 6 C 1.52996 * 109.47301 * 179.97438 * 5 4 2 7 7 N 1.46498 * 109.47059 * 179.97438 * 6 5 4 8 8 C 1.36943 * 119.99752 * 179.72430 * 7 6 5 9 9 H 1.08002 * 119.99793 * 0.27665 * 8 7 6 10 10 C 1.38811 * 120.00012 * 180.27737 * 8 7 6 11 11 N 1.31624 * 119.99698 * 0.02562 * 10 8 7 12 12 Si 1.86795 * 120.00072 * 180.02562 * 10 8 7 13 13 H 1.48495 * 109.47159 * 0.02562 * 12 10 8 14 14 H 1.48505 * 109.47290 * 120.00044 * 12 10 8 15 15 H 1.48503 * 109.47163 * 240.00049 * 12 10 8 16 16 N 1.46503 * 109.46874 * 239.99666 * 2 1 3 17 17 C 1.34771 * 119.99673 * 85.00531 * 16 2 1 18 18 O 1.21601 * 120.00319 * 359.97438 * 17 16 2 19 19 C 1.47433 * 119.99889 * 180.02562 * 17 16 2 20 20 C 1.38038 * 126.41346 * 359.67996 * 19 17 16 21 21 N 1.34258 * 107.41687 * 179.87355 * 20 19 17 22 22 H 0.97002 * 125.75647 * 180.14636 * 21 20 19 23 23 N 1.39931 * 108.49303 * 0.39821 * 21 20 19 24 24 C 1.30451 * 108.89526 * 359.75095 * 23 21 20 25 25 C 1.50699 * 125.99002 * 179.97438 * 24 23 21 26 26 H 1.08994 * 109.82538 * 195.74150 * 25 24 23 27 27 C 1.54385 * 109.83011 * 74.85195 * 25 24 23 28 28 C 1.55451 * 102.18788 * 219.18396 * 27 25 24 29 29 C 1.54948 * 100.98950 * 34.03835 * 28 27 25 30 30 O 1.43238 * 109.83070 * 316.62841 * 25 24 23 31 31 H 1.09006 * 109.47008 * 300.00639 * 1 2 3 32 32 H 1.09001 * 109.47021 * 59.99597 * 1 2 3 33 33 H 1.08995 * 109.47686 * 179.97438 * 1 2 3 34 34 H 1.08990 * 109.47421 * 64.99768 * 4 2 1 35 35 H 1.09002 * 109.47073 * 304.99053 * 4 2 1 36 36 H 1.09004 * 109.47038 * 59.99615 * 5 4 2 37 37 H 1.09000 * 109.46939 * 300.00268 * 5 4 2 38 38 H 1.09004 * 109.47066 * 60.00027 * 6 5 4 39 39 H 1.08994 * 109.46974 * 300.00175 * 6 5 4 40 40 H 0.97001 * 120.00384 * 0.02562 * 7 6 5 41 41 H 0.96999 * 119.99739 * 180.02562 * 11 10 8 42 42 H 0.97002 * 119.99845 * 265.00354 * 16 2 1 43 43 H 1.08004 * 126.29540 * 0.02955 * 20 19 17 44 44 H 1.09001 * 110.84935 * 337.32264 * 27 25 24 45 45 H 1.09007 * 110.84707 * 100.93930 * 27 25 24 46 46 H 1.08994 * 111.05663 * 276.12329 * 28 27 25 47 47 H 1.08998 * 111.18335 * 152.00802 * 28 27 25 48 48 H 1.08988 * 110.31061 * 204.68891 * 29 28 27 49 49 H 1.09001 * 110.39035 * 82.56149 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 3.5648 -0.6135 1.3137 6 6 4.0747 -1.3342 2.5633 7 7 5.5348 -1.2314 2.6246 8 6 6.2180 -1.8005 3.6660 9 1 5.6808 -2.3289 4.4397 10 6 7.6010 -1.6982 3.7273 11 7 8.2556 -1.0537 2.7846 12 14 8.5331 -2.4751 5.1474 13 1 7.5728 -3.1368 6.0667 14 1 9.4880 -3.4830 4.6205 15 1 9.2796 -1.4235 5.8838 16 7 2.0183 -0.6907 -1.1962 17 6 2.1470 -0.0184 -2.3571 18 8 1.8575 1.1614 -2.4118 19 6 2.6379 -0.7135 -3.5610 20 6 3.0075 -2.0407 -3.6474 21 7 3.3894 -2.2699 -4.9140 22 1 3.6994 -3.1182 -5.2679 23 7 3.2703 -1.0772 -5.6361 24 6 2.8240 -0.1445 -4.8408 25 6 2.5547 1.2888 -5.2203 26 1 2.4607 1.8979 -4.3213 27 6 1.2556 1.3757 -6.0499 28 6 1.6203 2.4429 -7.1199 29 6 3.1261 2.1457 -7.3322 30 8 3.6240 1.7852 -6.0339 31 1 -0.3633 0.5140 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3634 -1.0276 -0.0005 34 1 1.7515 -1.7715 1.2056 35 1 1.6054 -0.2617 2.1370 36 1 3.8532 0.4368 1.3574 37 1 3.9993 -1.0729 0.4260 38 1 3.7863 -2.3845 2.5200 39 1 3.6401 -0.8743 3.4507 40 1 6.0172 -0.7565 1.9299 41 1 9.2220 -0.9825 2.8271 42 1 2.2489 -1.6319 -1.1526 43 1 2.9900 -2.7628 -2.8445 44 1 1.0300 0.4179 -6.5189 45 1 0.4228 1.7123 -5.4325 46 1 1.4694 3.4512 -6.7345 47 1 1.0558 2.2877 -8.0393 48 1 3.6387 3.0341 -7.7008 49 1 3.2552 1.3183 -8.0300 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001571301627.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:40:27 Heat of formation + Delta-G solvation = -41.664429 kcal Electronic energy + Delta-G solvation = -28904.897132 eV Core-core repulsion = 24867.043876 eV Total energy + Delta-G solvation = -4037.853256 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.55183 -40.39630 -40.14716 -37.84930 -36.45289 -34.19403 -33.59695 -32.92324 -32.86426 -31.31101 -30.36468 -29.66907 -27.19749 -25.01318 -24.49648 -24.23419 -22.65630 -22.39444 -21.95150 -21.21883 -20.71378 -19.41757 -19.09680 -17.63498 -17.52353 -17.07907 -16.99280 -16.59127 -16.30625 -15.89108 -15.79723 -15.46696 -15.26510 -15.17427 -14.91769 -14.50787 -14.45744 -14.30310 -13.87238 -13.74274 -13.39374 -13.15017 -12.96575 -12.79918 -12.74138 -12.66075 -12.33828 -12.22349 -12.18323 -12.04326 -12.00371 -11.84722 -11.80890 -11.66110 -11.44125 -10.94038 -10.92853 -10.80423 -10.43045 -10.12770 -9.74368 -8.99379 -7.95253 -5.24436 0.52826 0.97155 1.47079 1.48374 1.58549 1.75012 2.31165 2.43960 2.56140 2.99168 3.31991 3.38652 3.52783 3.68156 3.71502 3.95012 4.00976 4.05790 4.17018 4.21376 4.29125 4.34834 4.35640 4.37894 4.49374 4.63421 4.65703 4.75361 4.78062 4.84757 4.88595 4.90853 4.91917 4.98651 5.01968 5.07414 5.17691 5.20340 5.27268 5.38912 5.43535 5.47159 5.53683 5.67953 5.99850 6.22890 6.27458 6.44941 6.70989 7.32752 7.36701 8.11078 8.32255 9.28756 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.013160 B = 0.002294 C = 0.002124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2127.137190 B =12203.069862 C =13179.711798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.146 3.854 3 H 0.062 0.938 4 C -0.108 4.108 5 C -0.113 4.113 6 C 0.150 3.850 7 N -0.751 5.751 8 C -0.243 4.243 9 H 0.079 0.921 10 C -0.081 4.081 11 N -0.973 5.973 12 Si 0.975 3.025 13 H -0.263 1.263 14 H -0.292 1.292 15 H -0.295 1.295 16 N -0.708 5.708 17 C 0.593 3.407 18 O -0.582 6.582 19 C -0.314 4.314 20 C 0.135 3.865 21 N -0.446 5.446 22 H 0.461 0.539 23 N -0.306 5.306 24 C 0.105 3.895 25 C 0.146 3.854 26 H 0.104 0.896 27 C -0.134 4.134 28 C -0.145 4.145 29 C 0.041 3.959 30 O -0.398 6.398 31 H 0.076 0.924 32 H 0.043 0.957 33 H 0.074 0.926 34 H 0.092 0.908 35 H 0.089 0.911 36 H 0.042 0.958 37 H 0.059 0.941 38 H 0.029 0.971 39 H 0.018 0.982 40 H 0.371 0.629 41 H 0.250 0.750 42 H 0.410 0.590 43 H 0.234 0.766 44 H 0.076 0.924 45 H 0.092 0.908 46 H 0.087 0.913 47 H 0.108 0.892 48 H 0.099 0.901 49 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.879 -1.973 -19.447 28.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.041 3.959 3 H 0.081 0.919 4 C -0.146 4.146 5 C -0.151 4.151 6 C 0.024 3.976 7 N -0.394 5.394 8 C -0.375 4.375 9 H 0.096 0.904 10 C -0.273 4.273 11 N -0.624 5.624 12 Si 0.804 3.196 13 H -0.187 1.187 14 H -0.220 1.220 15 H -0.222 1.222 16 N -0.359 5.359 17 C 0.382 3.618 18 O -0.463 6.463 19 C -0.329 4.329 20 C -0.019 4.019 21 N -0.153 5.153 22 H 0.310 0.690 23 N -0.129 5.129 24 C -0.064 4.064 25 C 0.086 3.914 26 H 0.121 0.879 27 C -0.172 4.172 28 C -0.182 4.182 29 C -0.035 4.035 30 O -0.317 6.317 31 H 0.095 0.905 32 H 0.062 0.938 33 H 0.092 0.908 34 H 0.110 0.890 35 H 0.107 0.893 36 H 0.060 0.940 37 H 0.078 0.922 38 H 0.047 0.953 39 H 0.036 0.964 40 H 0.202 0.798 41 H 0.059 0.941 42 H 0.247 0.753 43 H 0.250 0.750 44 H 0.095 0.905 45 H 0.111 0.889 46 H 0.106 0.894 47 H 0.126 0.874 48 H 0.117 0.883 49 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -20.506 -1.520 -20.428 28.985 hybrid contribution 1.182 -0.716 1.085 1.757 sum -19.324 -2.236 -19.343 27.433 Atomic orbital electron populations 1.22086 0.93761 1.03043 1.02238 1.20948 0.94759 0.96517 0.83655 0.91948 1.21748 0.93339 1.02411 0.97125 1.21600 0.96665 0.99560 0.97311 1.20875 0.82989 0.97549 0.96220 1.42693 1.02686 1.66072 1.27922 1.19723 0.89991 1.26194 1.01575 0.90359 1.25636 0.97635 1.02573 1.01469 1.69844 1.07027 1.49004 1.36495 0.85042 0.78476 0.77310 0.78757 1.18715 1.21961 1.22230 1.45795 1.67055 1.14355 1.08729 1.17403 0.76215 0.85603 0.82625 1.90679 1.53108 1.17067 1.85488 1.20305 1.21861 0.95549 0.95206 1.23781 0.92185 0.96501 0.89439 1.46227 1.50090 1.11531 1.07408 0.69048 1.77101 1.24172 0.91505 1.20133 1.22820 0.96016 0.96366 0.91168 1.21384 0.87557 0.86678 0.95766 0.87894 1.23086 0.96181 1.00622 0.97301 1.23305 0.95418 0.99539 0.99956 1.23615 0.94811 1.00535 0.84530 1.88480 1.34043 1.83486 1.25728 0.90521 0.93752 0.90750 0.88972 0.89258 0.93959 0.92210 0.95298 0.96378 0.79786 0.94083 0.75290 0.75023 0.90538 0.88923 0.89433 0.87360 0.88260 0.92021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.59 9.48 71.98 0.68 -1.91 16 2 C 0.15 3.03 2.57 44.99 0.12 3.15 16 3 H 0.06 1.68 7.58 -2.39 -0.02 1.66 16 4 C -0.11 -2.17 4.75 30.60 0.15 -2.02 16 5 C -0.11 -3.39 5.22 30.59 0.16 -3.23 16 6 C 0.15 5.71 6.26 86.38 0.54 6.25 16 7 N -0.75 -38.62 5.60 -343.46 -1.92 -40.55 16 8 C -0.24 -13.66 9.99 84.03 0.84 -12.82 16 9 H 0.08 4.18 7.83 -2.91 -0.02 4.16 16 10 C -0.08 -4.73 5.50 84.86 0.47 -4.26 16 11 N -0.97 -60.76 13.06 21.65 0.28 -60.48 16 12 Si 0.98 46.34 29.55 68.60 2.03 48.37 16 13 H -0.26 -11.59 7.11 99.48 0.71 -10.88 16 14 H -0.29 -13.81 7.11 99.48 0.71 -13.11 16 15 H -0.29 -14.08 7.11 99.48 0.71 -13.38 16 16 N -0.71 -14.03 4.52 -445.80 -2.01 -16.05 16 17 C 0.59 15.42 7.78 86.67 0.67 16.09 16 18 O -0.58 -19.27 14.33 -4.03 -0.06 -19.33 16 19 C -0.31 -7.32 6.13 -20.15 -0.12 -7.44 16 20 C 0.14 1.96 11.52 84.27 0.97 2.93 16 21 N -0.45 -6.85 7.29 -56.32 -0.41 -7.26 16 22 H 0.46 3.49 8.96 -213.43 -1.91 1.58 16 23 N -0.31 -7.43 12.63 -46.68 -0.59 -8.02 16 24 C 0.10 2.78 6.02 43.51 0.26 3.04 16 25 C 0.15 3.88 3.80 30.32 0.12 3.99 16 26 H 0.10 3.20 5.92 -2.39 -0.01 3.19 16 27 C -0.13 -2.56 6.55 31.91 0.21 -2.36 16 28 C -0.14 -2.13 7.16 32.10 0.23 -1.90 16 29 C 0.04 0.78 7.78 72.65 0.57 1.34 16 30 O -0.40 -11.31 11.00 -148.98 -1.64 -12.95 16 31 H 0.08 1.13 8.14 -2.38 -0.02 1.11 16 32 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 33 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 34 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 35 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 36 H 0.04 1.43 8.14 -2.38 -0.02 1.41 16 37 H 0.06 1.80 7.75 -2.39 -0.02 1.78 16 38 H 0.03 1.05 8.14 -2.38 -0.02 1.03 16 39 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 40 H 0.37 20.59 7.67 -92.71 -0.71 19.88 16 41 H 0.25 15.12 8.31 -92.71 -0.77 14.35 16 42 H 0.41 5.59 7.53 -92.71 -0.70 4.89 16 43 H 0.23 1.00 7.46 -2.91 -0.02 0.98 16 44 H 0.08 1.44 7.84 -2.39 -0.02 1.42 16 45 H 0.09 1.67 8.14 -2.38 -0.02 1.65 16 46 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 47 H 0.11 1.05 8.14 -2.39 -0.02 1.03 16 48 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 49 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 Total: -1.00 -82.42 402.51 -0.81 -83.23 By element: Atomic # 1 Polarization: 34.52 SS G_CDS: -2.34 Total: 32.18 kcal Atomic # 6 Polarization: -5.01 SS G_CDS: 5.85 Total: 0.85 kcal Atomic # 7 Polarization: -127.70 SS G_CDS: -4.66 Total: -132.35 kcal Atomic # 8 Polarization: -30.58 SS G_CDS: -1.70 Total: -32.27 kcal Atomic # 14 Polarization: 46.34 SS G_CDS: 2.03 Total: 48.37 kcal Total: -82.42 -0.81 -83.23 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571301627.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.566 kcal (2) G-P(sol) polarization free energy of solvation -82.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.230 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds