Wall clock time and date at job start Tue Mar 31 2020 20:40:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08993 * 109.46819 * 2 1 4 4 C 1.53003 * 109.46826 * 240.00440 * 2 1 3 5 5 C 1.53003 * 109.47017 * 174.99913 * 4 2 1 6 6 C 1.52996 * 109.47301 * 179.97438 * 5 4 2 7 7 N 1.46498 * 109.47059 * 179.97438 * 6 5 4 8 8 C 1.36943 * 119.99752 * 179.72430 * 7 6 5 9 9 H 1.08002 * 119.99793 * 0.27665 * 8 7 6 10 10 C 1.38811 * 120.00012 * 180.27737 * 8 7 6 11 11 N 1.31624 * 119.99698 * 0.02562 * 10 8 7 12 12 Si 1.86795 * 120.00072 * 180.02562 * 10 8 7 13 13 H 1.48503 * 109.47294 * 90.00155 * 12 10 8 14 14 H 1.48499 * 109.47218 * 210.00015 * 12 10 8 15 15 H 1.48496 * 109.47166 * 329.99846 * 12 10 8 16 16 N 1.46499 * 109.47100 * 120.00177 * 2 1 3 17 17 C 1.34771 * 120.00153 * 274.99589 * 16 2 1 18 18 O 1.21611 * 119.99650 * 0.02562 * 17 16 2 19 19 C 1.47424 * 120.00283 * 180.02562 * 17 16 2 20 20 C 1.38047 * 126.41643 * 0.02562 * 19 17 16 21 21 N 1.34253 * 107.41824 * 179.97438 * 20 19 17 22 22 H 0.97004 * 125.74846 * 180.02562 * 21 20 19 23 23 N 1.39929 * 108.49507 * 0.02562 * 21 20 19 24 24 C 1.30450 * 108.89655 * 359.73578 * 23 21 20 25 25 C 1.50700 * 125.99252 * 180.25847 * 24 23 21 26 26 H 1.09000 * 109.87066 * 164.46933 * 25 24 23 27 27 C 1.54104 * 109.87982 * 285.48102 * 25 24 23 28 28 C 1.54815 * 104.18745 * 121.45061 * 27 25 24 29 29 C 1.54995 * 102.09412 * 20.87829 * 28 27 25 30 30 O 1.43746 * 109.87378 * 43.46298 * 25 24 23 31 31 H 1.09000 * 109.47586 * 59.99616 * 1 2 3 32 32 H 1.09000 * 109.47436 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.47089 * 299.99933 * 1 2 3 34 34 H 1.08990 * 109.47421 * 54.99918 * 4 2 1 35 35 H 1.09002 * 109.47073 * 294.99203 * 4 2 1 36 36 H 1.09004 * 109.47038 * 59.99615 * 5 4 2 37 37 H 1.09000 * 109.46939 * 300.00268 * 5 4 2 38 38 H 1.09004 * 109.47066 * 60.00027 * 6 5 4 39 39 H 1.08994 * 109.46974 * 300.00175 * 6 5 4 40 40 H 0.97001 * 120.00384 * 0.02562 * 7 6 5 41 41 H 0.96999 * 119.99739 * 180.02562 * 11 10 8 42 42 H 0.97005 * 119.99928 * 95.00239 * 16 2 1 43 43 H 1.08005 * 126.28450 * 359.96495 * 20 19 17 44 44 H 1.08993 * 110.48587 * 240.12809 * 27 25 24 45 45 H 1.09005 * 110.48788 * 2.64372 * 27 25 24 46 46 H 1.08999 * 110.90502 * 139.07928 * 28 27 25 47 47 H 1.09001 * 110.90870 * 262.68553 * 28 27 25 48 48 H 1.09001 * 110.61902 * 81.47429 * 29 28 27 49 49 H 1.08999 * 110.62321 * 204.47783 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0276 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 3.5648 -0.6132 -1.3138 6 6 4.0748 -1.3349 -2.5628 7 7 5.5348 -1.2310 -2.6248 8 6 6.2190 -1.8103 -3.6599 9 1 5.6820 -2.3400 -4.4328 10 6 7.6029 -1.7168 -3.7156 11 7 8.2573 -1.0717 -2.7733 12 14 8.5362 -2.5065 -5.1279 13 1 8.6738 -1.5296 -6.2380 14 1 9.8844 -2.9185 -4.6613 15 1 7.7925 -3.6990 -5.6073 16 7 2.0183 -0.6906 1.1961 17 6 2.1471 -0.0184 2.3571 18 8 1.8575 1.1615 2.4118 19 6 2.6390 -0.7132 3.5606 20 6 3.0044 -2.0416 3.6482 21 7 3.3924 -2.2691 4.9132 22 1 3.7035 -3.1171 5.2667 23 7 3.2723 -1.0767 5.6356 24 6 2.8299 -0.1430 4.8392 25 6 2.5656 1.2917 5.2174 26 1 2.4705 1.9003 4.3182 27 6 1.2734 1.3841 6.0519 28 6 1.7281 2.0255 7.3856 29 6 3.0572 2.7117 6.9794 30 8 3.6406 1.7882 6.0323 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3634 -1.0276 -0.0005 33 1 -0.3633 0.5138 0.8900 34 1 1.6053 -0.2617 -2.1370 35 1 1.7516 -1.7715 -1.2057 36 1 3.9994 -1.0728 -0.4261 37 1 3.8531 0.4371 -1.3574 38 1 3.6402 -0.8757 -3.4507 39 1 3.7864 -2.3851 -2.5187 40 1 6.0171 -0.7555 -1.9304 41 1 9.2243 -1.0060 -2.8125 42 1 2.2490 -1.6318 1.1525 43 1 2.9821 -2.7648 2.8464 44 1 0.5418 2.0195 5.5530 45 1 0.8595 0.3908 6.2256 46 1 1.0010 2.7600 7.7318 47 1 1.9005 1.2629 8.1451 48 1 2.8632 3.6735 6.5047 49 1 3.7065 2.8344 7.8463 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001571301628.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:40:34 Heat of formation + Delta-G solvation = -13.116582 kcal Electronic energy + Delta-G solvation = -28897.820213 eV Core-core repulsion = 24861.204885 eV Total energy + Delta-G solvation = -4036.615328 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.74493 -39.44290 -39.28926 -36.66976 -34.81632 -32.84170 -32.65743 -32.11233 -31.53390 -30.02712 -29.25242 -28.80072 -25.66980 -23.79788 -23.75345 -22.81418 -21.87888 -21.18430 -20.78067 -20.30574 -19.91933 -18.62058 -17.01126 -16.70937 -16.51146 -16.22618 -16.05245 -15.34488 -15.23637 -14.68803 -14.53510 -14.43866 -14.07304 -13.81499 -13.76756 -13.56462 -13.43316 -13.09451 -12.97382 -12.64339 -12.19299 -12.08795 -11.96991 -11.87829 -11.49339 -11.29919 -11.18666 -11.11934 -10.99064 -10.85023 -10.79056 -10.44932 -10.39065 -10.12664 -9.99854 -9.89870 -9.67442 -9.57390 -9.20057 -8.92486 -8.85088 -6.90066 -5.74656 -3.03508 1.26625 1.87173 2.41007 3.18267 3.34438 3.44037 3.48689 3.50740 3.77674 4.11952 4.33286 4.47507 4.57504 4.62419 4.72054 4.76247 4.92084 5.04289 5.08782 5.13014 5.17669 5.19088 5.37555 5.44726 5.47941 5.53016 5.58588 5.59439 5.64705 5.66327 5.76830 5.81801 5.90051 5.98784 6.08513 6.09512 6.15940 6.23899 6.38029 6.42849 6.53973 6.68350 6.81398 6.88655 6.91667 7.26475 7.54277 7.70763 8.26474 8.44401 9.55016 10.14517 10.48607 11.48257 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.013092 B = 0.002295 C = 0.002131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2138.274944 B =12195.588941 C =13138.229277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.143 3.857 3 H 0.090 0.910 4 C -0.123 4.123 5 C -0.126 4.126 6 C 0.153 3.847 7 N -0.735 5.735 8 C -0.239 4.239 9 H 0.070 0.930 10 C -0.016 4.016 11 N -0.933 5.933 12 Si 0.907 3.093 13 H -0.290 1.290 14 H -0.291 1.291 15 H -0.282 1.282 16 N -0.718 5.718 17 C 0.596 3.404 18 O -0.544 6.544 19 C -0.280 4.280 20 C 0.108 3.892 21 N -0.460 5.460 22 H 0.445 0.555 23 N -0.274 5.274 24 C 0.132 3.868 25 C 0.148 3.852 26 H 0.118 0.882 27 C -0.140 4.140 28 C -0.153 4.153 29 C 0.046 3.954 30 O -0.365 6.365 31 H 0.065 0.935 32 H 0.054 0.946 33 H 0.058 0.942 34 H 0.079 0.921 35 H 0.066 0.934 36 H 0.060 0.940 37 H 0.062 0.938 38 H 0.017 0.983 39 H 0.016 0.984 40 H 0.383 0.617 41 H 0.255 0.745 42 H 0.397 0.603 43 H 0.189 0.811 44 H 0.083 0.917 45 H 0.075 0.925 46 H 0.081 0.919 47 H 0.077 0.923 48 H 0.064 0.936 49 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.198 0.593 19.575 27.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.039 3.961 3 H 0.108 0.892 4 C -0.161 4.161 5 C -0.164 4.164 6 C 0.025 3.975 7 N -0.379 5.379 8 C -0.371 4.371 9 H 0.088 0.912 10 C -0.212 4.212 11 N -0.582 5.582 12 Si 0.738 3.262 13 H -0.217 1.217 14 H -0.218 1.218 15 H -0.208 1.208 16 N -0.369 5.369 17 C 0.384 3.616 18 O -0.422 6.422 19 C -0.295 4.295 20 C -0.045 4.045 21 N -0.164 5.164 22 H 0.290 0.710 23 N -0.096 5.096 24 C -0.037 4.037 25 C 0.088 3.912 26 H 0.135 0.865 27 C -0.179 4.179 28 C -0.191 4.191 29 C -0.031 4.031 30 O -0.283 6.283 31 H 0.084 0.916 32 H 0.073 0.927 33 H 0.078 0.922 34 H 0.097 0.903 35 H 0.085 0.915 36 H 0.079 0.921 37 H 0.081 0.919 38 H 0.035 0.965 39 H 0.033 0.967 40 H 0.217 0.783 41 H 0.065 0.935 42 H 0.231 0.769 43 H 0.206 0.794 44 H 0.102 0.898 45 H 0.094 0.906 46 H 0.099 0.901 47 H 0.096 0.904 48 H 0.082 0.918 49 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -18.765 1.021 20.605 27.888 hybrid contribution 0.687 -1.239 -1.285 1.913 sum -18.078 -0.218 19.320 26.460 Atomic orbital electron populations 1.22170 0.95497 1.01897 1.02417 1.21034 0.93521 0.97906 0.83670 0.89152 1.21851 0.96870 1.00691 0.96688 1.21734 0.93643 1.01550 0.99429 1.20647 0.86178 0.96363 0.94279 1.42393 1.00220 1.66035 1.29234 1.19239 0.89397 1.26999 1.01442 0.91232 1.24762 0.96476 1.01282 0.98651 1.69669 1.07186 1.47013 1.34346 0.86186 0.79376 0.78828 0.81785 1.21700 1.21782 1.20800 1.45904 1.67685 1.13818 1.09523 1.17175 0.76639 0.85954 0.81836 1.90704 1.51321 1.15372 1.84838 1.20227 1.19587 0.93893 0.95831 1.23192 0.95199 0.97148 0.88976 1.46203 1.50909 1.11794 1.07501 0.70991 1.77236 1.23036 0.90374 1.18962 1.22222 0.95822 0.95404 0.90208 1.21394 0.86433 0.87316 0.96013 0.86485 1.22910 0.97278 1.02349 0.95335 1.23128 0.97753 1.00459 0.97731 1.23599 0.94065 0.92853 0.92563 1.89008 1.30138 1.60662 1.48524 0.91608 0.92654 0.92244 0.90270 0.91519 0.92085 0.91878 0.96523 0.96664 0.78312 0.93513 0.76922 0.79443 0.89797 0.90605 0.90080 0.90450 0.91819 0.88912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.52 9.48 37.16 0.35 -1.17 16 2 C 0.14 1.57 2.57 -67.93 -0.17 1.40 16 3 H 0.09 1.19 7.58 -51.93 -0.39 0.80 16 4 C -0.12 -1.38 4.75 -26.73 -0.13 -1.51 16 5 C -0.13 -1.95 5.22 -26.73 -0.14 -2.09 16 6 C 0.15 3.03 6.26 -4.04 -0.03 3.00 16 7 N -0.73 -18.97 5.60 -59.91 -0.34 -19.30 16 8 C -0.24 -6.81 9.99 -15.06 -0.15 -6.96 16 9 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 10 C -0.02 -0.46 5.50 -17.43 -0.10 -0.56 16 11 N -0.93 -28.76 13.06 55.49 0.72 -28.04 16 12 Si 0.91 22.61 29.55 -169.99 -5.02 17.58 16 13 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 14 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 15 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 16 N -0.72 -7.59 4.52 -54.89 -0.25 -7.84 16 17 C 0.60 7.70 7.78 -12.52 -0.10 7.60 16 18 O -0.54 -8.54 14.34 5.27 0.08 -8.47 16 19 C -0.28 -3.31 6.13 -105.07 -0.64 -3.95 16 20 C 0.11 0.90 11.52 -16.56 -0.19 0.71 16 21 N -0.46 -3.95 7.29 30.85 0.22 -3.72 16 22 H 0.45 2.20 8.96 -182.72 -1.64 0.56 16 23 N -0.27 -3.40 12.63 33.90 0.43 -2.98 16 24 C 0.13 1.73 5.94 -82.02 -0.49 1.24 16 25 C 0.15 1.87 3.69 -27.31 -0.10 1.77 16 26 H 0.12 1.65 5.93 -51.93 -0.31 1.34 16 27 C -0.14 -1.35 6.63 -25.20 -0.17 -1.52 16 28 C -0.15 -1.21 7.16 -24.72 -0.18 -1.39 16 29 C 0.05 0.42 7.72 38.21 0.29 0.72 16 30 O -0.36 -4.93 11.19 -35.23 -0.39 -5.32 16 31 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 35 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.06 0.95 7.75 -51.93 -0.40 0.55 16 37 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 38 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 39 H 0.02 0.30 8.14 -51.93 -0.42 -0.12 16 40 H 0.38 10.48 7.67 -40.82 -0.31 10.16 16 41 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 42 H 0.40 3.25 7.53 -40.82 -0.31 2.94 16 43 H 0.19 0.80 7.46 -52.48 -0.39 0.40 16 44 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 45 H 0.08 0.74 7.69 -51.93 -0.40 0.34 16 46 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 47 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 48 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 49 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 402.39 15.07 6.06 6.06 Total: -1.00 -36.94 402.39 -9.61 -46.55 By element: Atomic # 1 Polarization: 17.37 SS G_CDS: -9.19 Total: 8.18 kcal Atomic # 6 Polarization: -0.78 SS G_CDS: -1.93 Total: -2.71 kcal Atomic # 7 Polarization: -62.67 SS G_CDS: 0.79 Total: -61.87 kcal Atomic # 8 Polarization: -13.47 SS G_CDS: -0.32 Total: -13.79 kcal Atomic # 14 Polarization: 22.61 SS G_CDS: -5.02 Total: 17.58 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -36.94 -9.61 -46.55 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571301628.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.432 kcal (2) G-P(sol) polarization free energy of solvation -36.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.548 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds