Wall clock time and date at job start Tue Mar 31 2020 20:57:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09001 * 109.47350 * 2 1 4 4 C 1.52997 * 109.47397 * 239.99626 * 2 1 3 5 5 C 1.50701 * 109.47167 * 64.99721 * 4 2 1 6 6 H 1.08000 * 119.99805 * 0.02562 * 5 4 2 7 7 C 1.37873 * 120.00243 * 179.97438 * 5 4 2 8 8 N 1.31523 * 119.99972 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 120.00146 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47164 * 0.02562 * 9 7 5 11 11 H 1.48502 * 109.46781 * 120.00259 * 9 7 5 12 12 H 1.48493 * 109.47279 * 240.00107 * 9 7 5 13 13 C 1.50709 * 109.46753 * 119.99589 * 2 1 3 14 14 N 1.30289 * 126.34472 * 60.04638 * 13 2 1 15 15 N 1.28527 * 110.05333 * 179.68834 * 14 13 2 16 16 C 1.31226 * 109.85795 * 0.45483 * 15 14 13 17 17 N 1.38576 * 126.47360 * 179.82522 * 16 15 14 18 18 C 1.46845 * 110.99922 * 294.85642 * 17 16 15 19 19 C 1.53035 * 109.52511 * 185.84020 * 18 17 16 20 20 C 1.53115 * 109.27677 * 300.82020 * 19 18 17 21 21 C 1.53117 * 109.21410 * 57.62423 * 20 19 18 22 22 C 1.52993 * 109.50597 * 62.31701 * 21 20 19 23 23 C 1.50706 * 109.50522 * 182.43665 * 21 20 19 24 24 O 1.20824 * 120.00021 * 119.99849 * 23 21 20 25 25 O 1.34223 * 119.99640 * 299.99858 * 23 21 20 26 26 C 1.46851 * 110.99874 * 59.06581 * 17 16 15 27 27 N 1.36452 * 107.05157 * 359.55396 * 16 15 14 28 28 C 1.46501 * 127.13519 * 180.28321 * 27 16 15 29 29 H 1.08998 * 109.47038 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.46988 * 300.00729 * 1 2 3 31 31 H 1.09000 * 109.46852 * 60.00467 * 1 2 3 32 32 H 1.08995 * 109.47571 * 185.00701 * 4 2 1 33 33 H 1.09008 * 109.46993 * 305.00497 * 4 2 1 34 34 H 0.96999 * 119.99838 * 179.97438 * 8 7 5 35 35 H 1.09002 * 109.46459 * 65.82040 * 18 17 16 36 36 H 1.09003 * 109.45229 * 305.85095 * 18 17 16 37 37 H 1.08999 * 109.50712 * 180.87681 * 19 18 17 38 38 H 1.09002 * 109.50325 * 60.76117 * 19 18 17 39 39 H 1.09008 * 109.52408 * 177.55569 * 20 19 18 40 40 H 1.09001 * 109.52752 * 297.68382 * 20 19 18 41 41 H 1.08999 * 109.47483 * 59.99879 * 22 21 20 42 42 H 1.09003 * 109.47358 * 180.02562 * 22 21 20 43 43 H 1.08997 * 109.47085 * 300.00306 * 22 21 20 44 44 H 0.96704 * 117.00122 * 180.02562 * 25 23 21 45 45 H 1.08992 * 109.46422 * 294.17314 * 26 17 16 46 46 H 1.08994 * 109.46499 * 54.15884 * 26 17 16 47 47 H 1.09000 * 109.46647 * 95.23806 * 28 27 16 48 48 H 1.08992 * 109.47274 * 215.23103 * 28 27 16 49 49 H 1.08999 * 109.47265 * 335.23640 * 28 27 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 1.6414 0.0569 -2.4766 6 1 1.0807 0.9744 -2.3757 7 6 1.9933 -0.4019 -3.7282 8 7 2.6766 -1.5190 -3.8510 9 14 1.4997 0.5631 -5.2496 10 1 0.7432 1.7746 -4.8434 11 1 2.7182 0.9678 -5.9958 12 1 0.6461 -0.2859 -6.1188 13 6 2.0323 -0.7104 1.2306 14 7 1.7956 -1.9491 1.5578 15 7 2.3818 -2.2320 2.6660 16 6 3.0214 -1.1772 3.1139 17 7 3.7643 -1.0984 4.2810 18 6 2.9084 -1.2683 5.4621 19 6 3.7328 -1.0313 6.7295 20 6 4.8947 -2.0277 6.7704 21 6 5.7432 -1.8645 5.5063 22 6 6.3400 -0.4562 5.4700 23 6 6.8543 -2.8827 5.5112 24 8 6.9348 -3.6933 4.6189 25 8 7.7545 -2.8889 6.5069 26 6 4.8602 -2.0758 4.2743 27 7 2.8216 -0.1746 2.2102 28 6 3.3447 1.1923 2.2757 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 3.1263 -0.7996 -1.2055 33 1 1.6054 -1.7199 -1.2950 34 1 2.9239 -1.8419 -4.7316 35 1 2.5047 -2.2807 5.4755 36 1 2.0887 -0.5509 5.4226 37 1 3.1010 -1.1728 7.6064 38 1 4.1254 -0.0145 6.7234 39 1 5.5097 -1.8343 7.6494 40 1 4.5021 -3.0435 6.8169 41 1 6.9657 -0.3039 6.3494 42 1 6.9436 -0.3404 4.5697 43 1 5.5356 0.2792 5.4648 44 1 8.4490 -3.5605 6.4666 45 1 4.4474 -3.0844 4.2933 46 1 5.4581 -1.9450 3.3724 47 1 4.2672 1.2563 1.6988 48 1 2.6094 1.8829 1.8629 49 1 3.5466 1.4547 3.3142 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001592470218.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:57:04 Heat of formation + Delta-G solvation = -18.971995 kcal Electronic energy + Delta-G solvation = -30227.279503 eV Core-core repulsion = 26190.410265 eV Total energy + Delta-G solvation = -4036.869238 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.65177 -41.12748 -39.07685 -36.43319 -35.51701 -34.85037 -34.13497 -32.28738 -32.02980 -28.60138 -27.38118 -27.33666 -26.93396 -24.92688 -24.84916 -24.07007 -22.19880 -21.84471 -20.79770 -19.49683 -18.79973 -18.17746 -17.66528 -16.68352 -16.20716 -16.08798 -16.02796 -15.70112 -15.04634 -14.70791 -14.54000 -14.51500 -14.03077 -13.95623 -13.70581 -13.24023 -13.14694 -13.01643 -12.71420 -12.56542 -12.36589 -12.22135 -11.87570 -11.78619 -11.62853 -11.36988 -11.34713 -11.15759 -11.06988 -10.93201 -10.87543 -10.75776 -10.52497 -10.47755 -10.32075 -9.96031 -9.78849 -9.61473 -9.10422 -8.84325 -8.45822 -8.35965 -5.99945 -4.03816 1.89573 2.02146 2.34097 2.74750 3.28060 3.30791 3.38592 3.41129 3.71813 4.07895 4.29763 4.40269 4.43977 4.67177 4.76662 4.83679 4.94430 4.98101 5.08242 5.17139 5.22512 5.31134 5.34683 5.35545 5.42116 5.45632 5.50683 5.54525 5.56413 5.60927 5.66804 5.78938 5.86415 6.01184 6.03133 6.08766 6.16545 6.23313 6.31574 6.51706 6.68678 6.79674 6.90366 7.04097 7.41656 7.57485 7.63040 7.78817 7.99206 8.34831 9.02002 9.17019 9.59827 11.11127 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.018334 B = 0.002655 C = 0.002490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1526.879707 B =10543.282992 C =11242.138296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.003 4.003 3 H 0.073 0.927 4 C 0.038 3.962 5 C -0.520 4.520 6 H 0.059 0.941 7 C 0.059 3.941 8 N -0.890 5.890 9 Si 0.892 3.108 10 H -0.272 1.272 11 H -0.285 1.285 12 H -0.284 1.284 13 C 0.220 3.780 14 N -0.285 5.285 15 N -0.307 5.307 16 C 0.315 3.685 17 N -0.455 5.455 18 C 0.061 3.939 19 C -0.114 4.114 20 C -0.110 4.110 21 C -0.045 4.045 22 C -0.135 4.135 23 C 0.488 3.512 24 O -0.506 6.506 25 O -0.513 6.513 26 C 0.087 3.913 27 N -0.470 5.470 28 C 0.082 3.918 29 H 0.061 0.939 30 H 0.031 0.969 31 H 0.075 0.925 32 H 0.014 0.986 33 H 0.032 0.968 34 H 0.261 0.739 35 H 0.055 0.945 36 H 0.079 0.921 37 H 0.080 0.920 38 H 0.080 0.920 39 H 0.083 0.917 40 H 0.069 0.931 41 H 0.066 0.934 42 H 0.059 0.941 43 H 0.086 0.914 44 H 0.410 0.590 45 H 0.064 0.936 46 H 0.086 0.914 47 H 0.079 0.921 48 H 0.087 0.913 49 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.942 5.258 25.615 27.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.024 4.024 3 H 0.091 0.909 4 C 0.000 4.000 5 C -0.558 4.558 6 H 0.077 0.923 7 C -0.143 4.143 8 N -0.528 5.528 9 Si 0.719 3.281 10 H -0.197 1.197 11 H -0.211 1.211 12 H -0.210 1.210 13 C -0.047 4.047 14 N -0.125 5.125 15 N -0.152 5.152 16 C -0.041 4.041 17 N -0.180 5.180 18 C -0.066 4.066 19 C -0.152 4.152 20 C -0.148 4.148 21 C -0.047 4.047 22 C -0.192 4.192 23 C 0.329 3.671 24 O -0.393 6.393 25 O -0.325 6.325 26 C -0.040 4.040 27 N -0.163 5.163 28 C -0.062 4.062 29 H 0.080 0.920 30 H 0.050 0.950 31 H 0.094 0.906 32 H 0.032 0.968 33 H 0.051 0.949 34 H 0.070 0.930 35 H 0.073 0.927 36 H 0.098 0.902 37 H 0.099 0.901 38 H 0.098 0.902 39 H 0.101 0.899 40 H 0.088 0.912 41 H 0.085 0.915 42 H 0.078 0.922 43 H 0.104 0.896 44 H 0.269 0.731 45 H 0.083 0.917 46 H 0.105 0.895 47 H 0.097 0.903 48 H 0.106 0.894 49 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 6.416 4.289 25.223 26.378 hybrid contribution 0.710 0.504 -0.957 1.294 sum 7.126 4.793 24.267 25.742 Atomic orbital electron populations 1.21678 0.93538 1.02545 1.00624 1.20022 0.96288 0.97645 0.88418 0.90857 1.19111 0.96177 0.96302 0.88402 1.21166 1.35499 1.08480 0.90683 0.92265 1.25013 0.95158 0.95032 0.99115 1.69998 1.38408 1.20962 1.23472 0.86547 0.78247 0.80039 0.83217 1.19702 1.21113 1.20971 1.25706 0.93919 0.91997 0.93056 1.74073 1.20177 1.11104 1.07127 1.74540 1.11182 1.22213 1.07238 1.21954 1.02664 0.86470 0.93055 1.58349 1.09973 1.51507 0.98197 1.22221 0.94750 1.01924 0.87739 1.21651 0.96495 1.00226 0.96800 1.21672 0.96840 1.00629 0.95659 1.20465 0.91607 0.94678 0.97934 1.21832 1.01625 0.93288 1.02485 1.23279 0.81750 0.83621 0.78462 1.90783 1.73293 1.38677 1.36538 1.84501 1.40401 1.58508 1.49108 1.21910 0.90930 0.94326 0.96851 1.46253 1.39565 1.12217 1.18218 1.21967 1.00548 0.79335 1.04307 0.92029 0.94994 0.90605 0.96804 0.94938 0.92960 0.92680 0.90205 0.90122 0.90183 0.89883 0.91195 0.91500 0.92166 0.89564 0.73121 0.91720 0.89521 0.90255 0.89439 0.89049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.36 8.99 37.16 0.33 -2.02 16 2 C 0.00 -0.05 2.71 -91.77 -0.25 -0.30 16 3 H 0.07 1.35 7.08 -51.93 -0.37 0.98 16 4 C 0.04 0.98 4.43 -27.88 -0.12 0.86 16 5 C -0.52 -14.11 8.41 -34.44 -0.29 -14.40 16 6 H 0.06 1.52 7.06 -52.49 -0.37 1.15 16 7 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 8 N -0.89 -26.86 13.29 55.43 0.74 -26.12 16 9 Si 0.89 21.26 29.54 -169.99 -5.02 16.23 16 10 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 11 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 12 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 13 C 0.22 4.39 6.58 -154.02 -1.01 3.38 16 14 N -0.29 -6.35 12.18 32.99 0.40 -5.95 16 15 N -0.31 -6.22 12.17 30.31 0.37 -5.85 16 16 C 0.31 5.18 6.42 -318.87 -2.05 3.13 16 17 N -0.45 -5.55 3.92 -174.55 -0.68 -6.23 16 18 C 0.06 0.60 5.39 -3.84 -0.02 0.58 16 19 C -0.11 -0.74 5.74 -26.65 -0.15 -0.89 16 20 C -0.11 -0.78 4.71 -26.61 -0.13 -0.90 16 21 C -0.05 -0.41 0.71 -155.57 -0.11 -0.52 16 22 C -0.14 -1.01 7.97 37.15 0.30 -0.71 16 23 C 0.49 4.97 6.93 36.01 0.25 5.22 16 24 O -0.51 -7.19 16.75 -18.75 -0.31 -7.50 16 25 O -0.51 -3.55 13.26 -39.24 -0.52 -4.07 16 26 C 0.09 1.10 3.37 -3.83 -0.01 1.09 16 27 N -0.47 -7.67 3.21 -121.46 -0.39 -8.06 16 28 C 0.08 0.93 10.82 59.85 0.65 1.57 16 29 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 30 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 31 H 0.08 1.43 6.95 -51.93 -0.36 1.07 16 32 H 0.01 0.39 8.14 -51.93 -0.42 -0.04 16 33 H 0.03 0.93 8.14 -51.92 -0.42 0.51 16 34 H 0.26 7.42 8.31 -40.82 -0.34 7.09 16 35 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 36 H 0.08 0.79 8.10 -51.93 -0.42 0.37 16 37 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.08 0.46 6.59 -51.93 -0.34 0.12 16 39 H 0.08 0.47 8.14 -51.92 -0.42 0.05 16 40 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 41 H 0.07 0.41 8.12 -51.93 -0.42 -0.01 16 42 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 43 H 0.09 0.61 6.02 -51.93 -0.31 0.29 16 44 H 0.41 1.28 9.10 45.56 0.41 1.69 16 45 H 0.06 0.95 8.08 -51.93 -0.42 0.53 16 46 H 0.09 1.27 8.08 -51.93 -0.42 0.85 16 47 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 48 H 0.09 0.89 7.47 -51.93 -0.39 0.50 16 49 H 0.09 0.80 8.11 -51.93 -0.42 0.38 16 LS Contribution 394.75 15.07 5.95 5.95 Total: -1.00 -35.92 394.75 -9.38 -45.30 By element: Atomic # 1 Polarization: 5.86 SS G_CDS: -7.19 Total: -1.33 kcal Atomic # 6 Polarization: 0.36 SS G_CDS: -2.72 Total: -2.36 kcal Atomic # 7 Polarization: -52.65 SS G_CDS: 0.43 Total: -52.22 kcal Atomic # 8 Polarization: -10.74 SS G_CDS: -0.83 Total: -11.58 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -35.92 -9.38 -45.30 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592470218.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.326 kcal (2) G-P(sol) polarization free energy of solvation -35.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.298 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds