Wall clock time and date at job start Tue Mar 31 2020 20:57:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09002 * 109.47303 * 2 1 4 4 C 1.52999 * 109.47416 * 120.00323 * 2 1 3 5 5 C 1.50705 * 109.46935 * 294.99898 * 4 2 1 6 6 H 1.07995 * 119.99963 * 359.97438 * 5 4 2 7 7 C 1.37881 * 119.99933 * 180.02562 * 5 4 2 8 8 N 1.31514 * 119.99941 * 359.97438 * 7 5 4 9 9 Si 1.86793 * 119.99776 * 179.97438 * 7 5 4 10 10 H 1.48502 * 109.47204 * 59.99885 * 9 7 5 11 11 H 1.48500 * 109.47012 * 179.97438 * 9 7 5 12 12 H 1.48499 * 109.47200 * 299.99636 * 9 7 5 13 13 C 1.50698 * 109.46934 * 240.00219 * 2 1 3 14 14 N 1.30299 * 126.34855 * 299.97324 * 13 2 1 15 15 N 1.28530 * 110.05580 * 180.02562 * 14 13 2 16 16 C 1.31220 * 109.85842 * 0.02562 * 15 14 13 17 17 N 1.38579 * 126.46734 * 179.97438 * 16 15 14 18 18 C 1.46850 * 111.00282 * 0.02569 * 17 16 15 19 19 C 1.53035 * 109.52118 * 185.83555 * 18 17 16 20 20 C 1.53114 * 109.28132 * 300.82080 * 19 18 17 21 21 C 1.53002 * 109.52402 * 297.68488 * 20 19 18 22 22 C 1.50706 * 109.52514 * 177.56099 * 20 19 18 23 23 O 1.20825 * 119.99859 * 359.97438 * 22 20 19 24 24 O 1.34224 * 120.00295 * 180.02562 * 22 20 19 25 25 C 1.53119 * 109.16088 * 57.65551 * 20 19 18 26 26 C 1.46846 * 110.99669 * 124.23549 * 17 16 15 27 27 N 1.36448 * 107.05161 * 0.22415 * 16 15 14 28 28 C 1.46507 * 127.13162 * 179.77365 * 27 16 15 29 29 H 1.09001 * 109.46801 * 300.00183 * 1 2 3 30 30 H 1.09003 * 109.47275 * 59.99515 * 1 2 3 31 31 H 1.09002 * 109.47303 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47125 * 54.99675 * 4 2 1 33 33 H 1.08997 * 109.47251 * 174.99756 * 4 2 1 34 34 H 0.96998 * 119.99965 * 179.97438 * 8 7 5 35 35 H 1.09002 * 109.45900 * 65.82249 * 18 17 16 36 36 H 1.08996 * 109.45027 * 305.84568 * 18 17 16 37 37 H 1.09000 * 109.50083 * 180.87947 * 19 18 17 38 38 H 1.09002 * 109.53238 * 60.78364 * 19 18 17 39 39 H 1.08995 * 109.47114 * 299.87359 * 21 20 19 40 40 H 1.09005 * 109.46849 * 59.87132 * 21 20 19 41 41 H 1.08998 * 109.47392 * 179.86942 * 21 20 19 42 42 H 0.96700 * 117.00196 * 179.97438 * 24 22 20 43 43 H 1.09000 * 109.50849 * 62.28703 * 25 20 19 44 44 H 1.09002 * 109.50305 * 182.40507 * 25 20 19 45 45 H 1.09008 * 109.46197 * 294.17508 * 26 17 16 46 46 H 1.09005 * 109.46412 * 54.15082 * 26 17 16 47 47 H 1.09005 * 109.46846 * 90.02555 * 28 27 16 48 48 H 1.08997 * 109.46796 * 210.02118 * 28 27 16 49 49 H 1.08996 * 109.47068 * 330.02975 * 28 27 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6414 0.0570 2.4766 6 1 1.0807 0.9745 2.3757 7 6 1.9934 -0.4018 3.7283 8 7 2.6765 -1.5188 3.8511 9 14 1.4998 0.5633 5.2495 10 1 0.0199 0.6699 5.3096 11 1 1.9948 -0.1368 6.4620 12 1 2.0920 1.9236 5.1865 13 6 2.0322 -0.7104 -1.2305 14 7 1.7953 -1.9491 -1.5579 15 7 2.3768 -2.2302 -2.6691 16 6 3.0216 -1.1774 -3.1136 17 7 3.7651 -1.0988 -4.2805 18 6 3.7527 -2.3791 -4.9997 19 6 4.6973 -2.2999 -6.2011 20 6 4.2433 -1.1685 -7.1274 21 6 2.8416 -1.4743 -7.6591 22 6 5.2043 -1.0465 -8.2820 23 8 6.1555 -1.7876 -8.3571 24 8 5.0040 -0.1138 -9.2262 25 6 4.2185 0.1453 -6.3413 26 6 3.2878 -0.0048 -5.1358 27 7 2.8265 -0.1765 -2.2071 28 6 3.3554 1.1884 -2.2691 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 1.6054 -1.7198 1.2951 33 1 3.1263 -0.7995 1.2055 34 1 2.9245 -1.8414 4.7316 35 1 2.7413 -2.5912 -5.3462 36 1 4.0818 -3.1743 -4.3308 37 1 4.6761 -3.2451 -6.7436 38 1 5.7117 -2.1018 -5.8547 39 1 2.8606 -2.4111 -8.2160 40 1 2.1473 -1.5624 -6.8235 41 1 2.5183 -0.6673 -8.3166 42 1 5.6473 -0.0737 -9.9471 43 1 5.2250 0.3823 -5.9967 44 1 3.8551 0.9471 -6.9841 45 1 2.2784 -0.2281 -5.4818 46 1 3.2791 0.9244 -4.5660 47 1 2.6484 1.8283 -2.7973 48 1 3.5029 1.5671 -1.2578 49 1 4.3081 1.1851 -2.7986 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001603141635.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:57:22 Heat of formation + Delta-G solvation = -16.512397 kcal Electronic energy + Delta-G solvation = -29976.205344 eV Core-core repulsion = 25939.442762 eV Total energy + Delta-G solvation = -4036.762582 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.68189 -41.24386 -39.23847 -36.56705 -35.56687 -35.14302 -34.19895 -32.16907 -31.39686 -29.30510 -27.80823 -27.30553 -26.91830 -25.62309 -24.34040 -23.63120 -22.44491 -21.78727 -20.91409 -19.40062 -18.82900 -18.29720 -17.55279 -16.92248 -16.50691 -16.28003 -16.00122 -15.77605 -15.30118 -14.95371 -14.54213 -14.46395 -14.05048 -13.95405 -13.71261 -13.29904 -13.18026 -13.03509 -12.68782 -12.42844 -12.36145 -12.34490 -11.99379 -11.91858 -11.77551 -11.62627 -11.35127 -11.23384 -11.04681 -10.92873 -10.91342 -10.75621 -10.68229 -10.48778 -10.29248 -9.96284 -9.82519 -9.75174 -9.27375 -9.12485 -8.36327 -7.92651 -5.99866 -4.03866 1.78139 2.09499 2.43750 2.55752 3.26891 3.32215 3.37807 3.38818 3.61286 4.00435 4.13287 4.32245 4.43740 4.58943 4.72420 4.74128 4.82107 4.89551 4.97574 5.01395 5.05986 5.15341 5.19839 5.30071 5.33359 5.35234 5.38265 5.41047 5.49841 5.51968 5.65331 5.70021 5.76437 5.92485 6.03194 6.07238 6.08229 6.17887 6.27562 6.60276 6.69414 6.79470 6.90140 7.04092 7.38030 7.46828 7.63020 7.78969 7.99317 8.34863 9.01611 9.22569 9.59575 11.11094 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.029707 B = 0.002247 C = 0.002231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 942.307953 B =12460.534765 C =12547.900028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.001 4.001 3 H 0.072 0.928 4 C 0.038 3.962 5 C -0.522 4.522 6 H 0.058 0.942 7 C 0.059 3.941 8 N -0.890 5.890 9 Si 0.892 3.108 10 H -0.276 1.276 11 H -0.288 1.288 12 H -0.278 1.278 13 C 0.215 3.785 14 N -0.283 5.283 15 N -0.322 5.322 16 C 0.332 3.668 17 N -0.448 5.448 18 C 0.074 3.926 19 C -0.099 4.099 20 C -0.052 4.052 21 C -0.148 4.148 22 C 0.489 3.511 23 O -0.510 6.510 24 O -0.514 6.514 25 C -0.102 4.102 26 C 0.049 3.951 27 N -0.487 5.487 28 C 0.074 3.926 29 H 0.074 0.926 30 H 0.030 0.970 31 H 0.060 0.940 32 H 0.032 0.968 33 H 0.014 0.986 34 H 0.262 0.738 35 H 0.058 0.942 36 H 0.099 0.901 37 H 0.086 0.914 38 H 0.085 0.915 39 H 0.065 0.935 40 H 0.076 0.924 41 H 0.071 0.929 42 H 0.409 0.591 43 H 0.081 0.919 44 H 0.089 0.911 45 H 0.054 0.946 46 H 0.087 0.913 47 H 0.074 0.926 48 H 0.097 0.903 49 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.818 6.814 -26.405 27.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.022 4.022 3 H 0.090 0.910 4 C 0.000 4.000 5 C -0.560 4.560 6 H 0.076 0.924 7 C -0.143 4.143 8 N -0.528 5.528 9 Si 0.720 3.280 10 H -0.202 1.202 11 H -0.213 1.213 12 H -0.203 1.203 13 C -0.053 4.053 14 N -0.120 5.120 15 N -0.166 5.166 16 C -0.024 4.024 17 N -0.172 5.172 18 C -0.053 4.053 19 C -0.137 4.137 20 C -0.053 4.053 21 C -0.205 4.205 22 C 0.331 3.669 23 O -0.397 6.397 24 O -0.326 6.326 25 C -0.140 4.140 26 C -0.078 4.078 27 N -0.183 5.183 28 C -0.069 4.069 29 H 0.093 0.907 30 H 0.049 0.951 31 H 0.080 0.920 32 H 0.050 0.950 33 H 0.032 0.968 34 H 0.072 0.928 35 H 0.076 0.924 36 H 0.117 0.883 37 H 0.104 0.896 38 H 0.103 0.897 39 H 0.084 0.916 40 H 0.095 0.905 41 H 0.090 0.910 42 H 0.268 0.732 43 H 0.100 0.900 44 H 0.107 0.893 45 H 0.072 0.928 46 H 0.105 0.895 47 H 0.093 0.907 48 H 0.115 0.885 49 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 2.843 5.152 -25.813 26.475 hybrid contribution 0.328 1.719 0.093 1.752 sum 3.171 6.871 -25.720 26.810 Atomic orbital electron populations 1.21668 0.93601 1.02501 1.00539 1.19984 0.96216 0.97563 0.88479 0.91006 1.19107 0.96178 0.96291 0.88399 1.21097 1.35675 1.08489 0.90734 0.92404 1.25009 0.95159 0.95030 0.99088 1.69971 1.38251 1.20921 1.23691 0.86661 0.78944 0.79953 0.82441 1.20157 1.21331 1.20323 1.25585 0.94374 0.91870 0.93451 1.74006 1.19890 1.10945 1.07152 1.74546 1.11897 1.21922 1.08248 1.22399 0.99592 0.87317 0.93115 1.58586 1.48451 1.07655 1.02527 1.22071 0.99533 0.89207 0.94511 1.21642 1.00612 0.97304 0.94123 1.20627 0.94764 0.98870 0.91077 1.22001 0.93583 1.02792 1.02165 1.23395 0.84582 0.76497 0.82401 1.90736 1.30574 1.42470 1.75958 1.84529 1.56517 1.55147 1.36426 1.21651 1.01600 0.95292 0.95434 1.22385 0.97465 0.94384 0.93565 1.46118 1.41234 1.12195 1.18709 1.22083 0.99849 0.79623 1.05325 0.90680 0.95064 0.92050 0.94958 0.96793 0.92846 0.92356 0.88275 0.89592 0.89656 0.91616 0.90543 0.90971 0.73210 0.90012 0.89289 0.92751 0.89503 0.90731 0.88451 0.89233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.32 8.98 37.16 0.33 -1.98 16 2 C 0.00 -0.03 2.70 -91.78 -0.25 -0.27 16 3 H 0.07 1.31 6.95 -51.93 -0.36 0.94 16 4 C 0.04 0.98 4.43 -27.88 -0.12 0.86 16 5 C -0.52 -14.05 8.41 -34.44 -0.29 -14.34 16 6 H 0.06 1.47 7.06 -52.49 -0.37 1.10 16 7 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 8 N -0.89 -26.68 13.29 55.43 0.74 -25.94 16 9 Si 0.89 21.13 29.54 -169.99 -5.02 16.11 16 10 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 11 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 12 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 13 C 0.21 4.21 6.58 -154.01 -1.01 3.19 16 14 N -0.28 -6.16 12.18 32.99 0.40 -5.76 16 15 N -0.32 -6.30 11.24 30.31 0.34 -5.95 16 16 C 0.33 5.33 7.21 -318.88 -2.30 3.03 16 17 N -0.45 -5.37 4.70 -174.55 -0.82 -6.19 16 18 C 0.07 0.80 4.63 -3.83 -0.02 0.79 16 19 C -0.10 -0.88 4.18 -26.65 -0.11 -0.99 16 20 C -0.05 -0.39 0.71 -155.54 -0.11 -0.50 16 21 C -0.15 -0.95 7.83 37.16 0.29 -0.66 16 22 C 0.49 4.00 6.93 36.01 0.25 4.25 16 23 O -0.51 -5.80 16.73 -18.75 -0.31 -6.12 16 24 O -0.51 -2.86 13.26 -39.24 -0.52 -3.38 16 25 C -0.10 -0.69 4.82 -26.65 -0.13 -0.82 16 26 C 0.05 0.43 5.03 -3.83 -0.02 0.41 16 27 N -0.49 -7.74 3.21 -121.46 -0.39 -8.13 16 28 C 0.07 0.81 9.15 59.85 0.55 1.35 16 29 H 0.07 1.41 6.95 -51.93 -0.36 1.04 16 30 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 32 H 0.03 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.01 0.39 8.14 -51.93 -0.42 -0.04 16 34 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 35 H 0.06 0.63 6.51 -51.93 -0.34 0.29 16 36 H 0.10 1.25 7.92 -51.93 -0.41 0.84 16 37 H 0.09 0.73 8.14 -51.93 -0.42 0.30 16 38 H 0.08 0.85 8.04 -51.93 -0.42 0.44 16 39 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 40 H 0.08 0.53 4.93 -51.93 -0.26 0.28 16 41 H 0.07 0.40 8.11 -51.93 -0.42 -0.02 16 42 H 0.41 0.71 9.10 45.56 0.41 1.12 16 43 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 44 H 0.09 0.47 8.14 -51.93 -0.42 0.04 16 45 H 0.05 0.48 6.52 -51.92 -0.34 0.14 16 46 H 0.09 0.68 5.23 -51.93 -0.27 0.41 16 47 H 0.07 0.61 7.75 -51.93 -0.40 0.21 16 48 H 0.10 1.08 7.24 -51.93 -0.38 0.70 16 49 H 0.09 0.81 7.66 -51.93 -0.40 0.41 16 LS Contribution 385.93 15.07 5.82 5.82 Total: -1.00 -35.67 385.93 -9.63 -45.30 By element: Atomic # 1 Polarization: 5.21 SS G_CDS: -6.82 Total: -1.61 kcal Atomic # 6 Polarization: -1.10 SS G_CDS: -3.04 Total: -4.14 kcal Atomic # 7 Polarization: -52.24 SS G_CDS: 0.27 Total: -51.97 kcal Atomic # 8 Polarization: -8.67 SS G_CDS: -0.83 Total: -9.50 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -35.67 -9.63 -45.30 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001603141635.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.787 kcal (2) G-P(sol) polarization free energy of solvation -35.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.300 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds