Wall clock time and date at job start Tue Mar 31 2020 20:57:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09002 * 109.47303 * 2 1 4 4 C 1.52999 * 109.47416 * 120.00323 * 2 1 3 5 5 C 1.50705 * 109.46935 * 294.99898 * 4 2 1 6 6 H 1.07995 * 119.99963 * 359.97438 * 5 4 2 7 7 C 1.37881 * 119.99933 * 180.02562 * 5 4 2 8 8 N 1.31514 * 119.99941 * 359.97438 * 7 5 4 9 9 Si 1.86793 * 119.99776 * 179.97438 * 7 5 4 10 10 H 1.48502 * 109.47204 * 59.99885 * 9 7 5 11 11 H 1.48500 * 109.47012 * 179.97438 * 9 7 5 12 12 H 1.48499 * 109.47200 * 299.99636 * 9 7 5 13 13 C 1.50698 * 109.46934 * 240.00219 * 2 1 3 14 14 N 1.30299 * 126.34855 * 299.97324 * 13 2 1 15 15 N 1.28530 * 110.05580 * 180.02562 * 14 13 2 16 16 C 1.31220 * 109.85842 * 0.02562 * 15 14 13 17 17 N 1.38579 * 126.46734 * 179.97438 * 16 15 14 18 18 C 1.46850 * 111.00282 * 0.02569 * 17 16 15 19 19 C 1.53035 * 109.52118 * 185.83555 * 18 17 16 20 20 C 1.53114 * 109.28132 * 300.82080 * 19 18 17 21 21 C 1.53002 * 109.52402 * 297.68488 * 20 19 18 22 22 C 1.50706 * 109.52514 * 177.56099 * 20 19 18 23 23 O 1.20825 * 119.99859 * 359.97438 * 22 20 19 24 24 O 1.34224 * 120.00295 * 180.02562 * 22 20 19 25 25 C 1.53119 * 109.16088 * 57.65551 * 20 19 18 26 26 C 1.46846 * 110.99669 * 124.23549 * 17 16 15 27 27 N 1.36448 * 107.05161 * 0.22415 * 16 15 14 28 28 C 1.46507 * 127.13162 * 179.77365 * 27 16 15 29 29 H 1.09001 * 109.46801 * 300.00183 * 1 2 3 30 30 H 1.09003 * 109.47275 * 59.99515 * 1 2 3 31 31 H 1.09002 * 109.47303 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47125 * 54.99675 * 4 2 1 33 33 H 1.08997 * 109.47251 * 174.99756 * 4 2 1 34 34 H 0.96998 * 119.99965 * 179.97438 * 8 7 5 35 35 H 1.09002 * 109.45900 * 65.82249 * 18 17 16 36 36 H 1.08996 * 109.45027 * 305.84568 * 18 17 16 37 37 H 1.09000 * 109.50083 * 180.87947 * 19 18 17 38 38 H 1.09002 * 109.53238 * 60.78364 * 19 18 17 39 39 H 1.08995 * 109.47114 * 299.87359 * 21 20 19 40 40 H 1.09005 * 109.46849 * 59.87132 * 21 20 19 41 41 H 1.08998 * 109.47392 * 179.86942 * 21 20 19 42 42 H 0.96700 * 117.00196 * 179.97438 * 24 22 20 43 43 H 1.09000 * 109.50849 * 62.28703 * 25 20 19 44 44 H 1.09002 * 109.50305 * 182.40507 * 25 20 19 45 45 H 1.09008 * 109.46197 * 294.17508 * 26 17 16 46 46 H 1.09005 * 109.46412 * 54.15082 * 26 17 16 47 47 H 1.09005 * 109.46846 * 90.02555 * 28 27 16 48 48 H 1.08997 * 109.46796 * 210.02118 * 28 27 16 49 49 H 1.08996 * 109.47068 * 330.02975 * 28 27 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6414 0.0570 2.4766 6 1 1.0807 0.9745 2.3757 7 6 1.9934 -0.4018 3.7283 8 7 2.6765 -1.5188 3.8511 9 14 1.4998 0.5633 5.2495 10 1 0.0199 0.6699 5.3096 11 1 1.9948 -0.1368 6.4620 12 1 2.0920 1.9236 5.1865 13 6 2.0322 -0.7104 -1.2305 14 7 1.7953 -1.9491 -1.5579 15 7 2.3768 -2.2302 -2.6691 16 6 3.0216 -1.1774 -3.1136 17 7 3.7651 -1.0988 -4.2805 18 6 3.7527 -2.3791 -4.9997 19 6 4.6973 -2.2999 -6.2011 20 6 4.2433 -1.1685 -7.1274 21 6 2.8416 -1.4743 -7.6591 22 6 5.2043 -1.0465 -8.2820 23 8 6.1555 -1.7876 -8.3571 24 8 5.0040 -0.1138 -9.2262 25 6 4.2185 0.1453 -6.3413 26 6 3.2878 -0.0048 -5.1358 27 7 2.8265 -0.1765 -2.2071 28 6 3.3554 1.1884 -2.2691 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 1.6054 -1.7198 1.2951 33 1 3.1263 -0.7995 1.2055 34 1 2.9245 -1.8414 4.7316 35 1 2.7413 -2.5912 -5.3462 36 1 4.0818 -3.1743 -4.3308 37 1 4.6761 -3.2451 -6.7436 38 1 5.7117 -2.1018 -5.8547 39 1 2.8606 -2.4111 -8.2160 40 1 2.1473 -1.5624 -6.8235 41 1 2.5183 -0.6673 -8.3166 42 1 5.6473 -0.0737 -9.9471 43 1 5.2250 0.3823 -5.9967 44 1 3.8551 0.9471 -6.9841 45 1 2.2784 -0.2281 -5.4818 46 1 3.2791 0.9244 -4.5660 47 1 2.6484 1.8283 -2.7973 48 1 3.5029 1.5671 -1.2578 49 1 4.3081 1.1851 -2.7986 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001603141635.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:57:21 Heat of formation + Delta-G solvation = -39.041671 kcal Electronic energy + Delta-G solvation = -29977.182286 eV Core-core repulsion = 25939.442762 eV Total energy + Delta-G solvation = -4037.739524 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -44.00963 -41.91890 -40.02880 -37.19227 -37.09103 -36.23011 -35.41964 -34.12678 -32.14748 -30.50742 -29.07484 -28.57968 -28.15989 -26.38670 -25.91572 -24.74869 -23.39557 -23.17227 -22.02645 -20.68285 -19.73352 -18.90180 -18.62452 -18.41066 -17.76777 -17.34642 -17.01456 -16.74146 -16.47303 -16.20692 -15.81466 -15.34463 -15.12648 -14.97478 -14.58742 -14.48528 -14.40304 -14.12919 -13.92308 -13.60921 -13.38146 -13.09713 -12.97905 -12.94260 -12.81340 -12.70245 -12.62713 -12.52608 -12.36934 -12.30814 -12.26281 -12.03737 -11.88994 -11.63675 -11.50107 -11.41141 -11.27982 -11.15345 -11.06499 -10.62505 -10.52354 -9.21646 -8.14577 -6.26609 0.81780 1.16733 1.25333 1.44980 1.48422 1.55739 1.86441 2.02792 2.44862 2.58177 3.19281 3.35472 3.45338 3.53329 3.70623 3.76972 3.88888 4.01607 4.05598 4.14057 4.19178 4.29773 4.31794 4.40997 4.45973 4.49992 4.53991 4.60958 4.63917 4.71424 4.79130 4.81615 4.85904 4.88850 5.03060 5.07672 5.09053 5.12994 5.20458 5.29116 5.39593 5.47653 5.52273 5.60389 5.68489 5.72558 5.85496 6.18330 6.23035 6.89612 6.98367 7.42660 7.82570 8.97694 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.029707 B = 0.002247 C = 0.002231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 942.307953 B =12460.534765 C =12547.900028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C 0.010 3.990 3 H 0.098 0.902 4 C 0.049 3.951 5 C -0.527 4.527 6 H 0.078 0.922 7 C -0.005 4.005 8 N -0.938 5.938 9 Si 0.968 3.032 10 H -0.264 1.264 11 H -0.292 1.292 12 H -0.261 1.261 13 C 0.199 3.801 14 N -0.328 5.328 15 N -0.363 5.363 16 C 0.352 3.648 17 N -0.446 5.446 18 C 0.077 3.923 19 C -0.090 4.090 20 C -0.052 4.052 21 C -0.145 4.145 22 C 0.498 3.502 23 O -0.548 6.548 24 O -0.504 6.504 25 C -0.093 4.093 26 C 0.047 3.953 27 N -0.483 5.483 28 C 0.062 3.938 29 H 0.073 0.927 30 H 0.064 0.936 31 H 0.038 0.962 32 H -0.013 1.013 33 H -0.023 1.023 34 H 0.261 0.739 35 H 0.060 0.940 36 H 0.073 0.927 37 H 0.088 0.912 38 H 0.073 0.927 39 H 0.065 0.935 40 H 0.070 0.930 41 H 0.088 0.912 42 H 0.428 0.572 43 H 0.081 0.919 44 H 0.116 0.884 45 H 0.059 0.941 46 H 0.102 0.898 47 H 0.110 0.890 48 H 0.095 0.905 49 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.319 10.472 -28.366 30.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.011 4.011 3 H 0.116 0.884 4 C 0.011 3.989 5 C -0.565 4.565 6 H 0.096 0.904 7 C -0.202 4.202 8 N -0.579 5.579 9 Si 0.792 3.208 10 H -0.189 1.189 11 H -0.218 1.218 12 H -0.186 1.186 13 C -0.070 4.070 14 N -0.165 5.165 15 N -0.208 5.208 16 C -0.006 4.006 17 N -0.171 5.171 18 C -0.050 4.050 19 C -0.128 4.128 20 C -0.053 4.053 21 C -0.202 4.202 22 C 0.342 3.658 23 O -0.438 6.438 24 O -0.318 6.318 25 C -0.131 4.131 26 C -0.079 4.079 27 N -0.178 5.178 28 C -0.078 4.078 29 H 0.092 0.908 30 H 0.083 0.917 31 H 0.057 0.943 32 H 0.006 0.994 33 H -0.005 1.005 34 H 0.070 0.930 35 H 0.078 0.922 36 H 0.092 0.908 37 H 0.106 0.894 38 H 0.092 0.908 39 H 0.084 0.916 40 H 0.089 0.911 41 H 0.106 0.894 42 H 0.289 0.711 43 H 0.099 0.901 44 H 0.135 0.865 45 H 0.077 0.923 46 H 0.121 0.879 47 H 0.129 0.871 48 H 0.114 0.886 49 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 2.341 8.868 -27.826 29.299 hybrid contribution 0.580 0.575 0.540 0.979 sum 2.921 9.443 -27.286 29.021 Atomic orbital electron populations 1.21577 0.92326 1.01527 1.02065 1.19730 0.97217 0.97891 0.86236 0.88401 1.18854 0.93561 0.94841 0.91610 1.21557 1.34959 1.08911 0.91101 0.90351 1.26049 0.95110 0.95996 1.03038 1.70156 1.40128 1.23187 1.24389 0.85462 0.79076 0.78725 0.77546 1.18872 1.21800 1.18557 1.25273 0.95782 0.91714 0.94256 1.73889 1.21582 1.12579 1.08478 1.74429 1.14025 1.23938 1.08372 1.22784 0.97597 0.86357 0.93829 1.58772 1.47172 1.09060 1.02111 1.22023 1.00088 0.88296 0.94574 1.21520 0.99278 0.98488 0.93558 1.20593 0.95248 0.98582 0.90869 1.21982 0.92489 1.03524 1.02165 1.23352 0.83744 0.76133 0.82602 1.90737 1.32149 1.44054 1.76902 1.84475 1.57007 1.53775 1.36514 1.21655 1.01236 0.95485 0.94735 1.22583 0.98159 0.93415 0.93781 1.46253 1.40279 1.13781 1.17456 1.22533 1.01744 0.77362 1.06207 0.90798 0.91677 0.94323 0.99409 1.00495 0.93033 0.92159 0.90817 0.89362 0.90822 0.91564 0.91140 0.89356 0.71061 0.90058 0.86546 0.92283 0.87945 0.87124 0.88638 0.87201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.26 8.98 71.98 0.65 -3.61 16 2 C 0.01 0.41 2.70 -11.54 -0.03 0.38 16 3 H 0.10 3.39 6.95 -2.39 -0.02 3.37 16 4 C 0.05 2.65 4.43 29.85 0.13 2.78 16 5 C -0.53 -28.66 8.41 25.60 0.22 -28.44 16 6 H 0.08 3.86 7.06 -2.91 -0.02 3.83 16 7 C 0.00 -0.26 5.46 84.66 0.46 0.21 16 8 N -0.94 -58.37 13.29 21.45 0.28 -58.09 16 9 Si 0.97 43.32 29.54 68.60 2.03 45.35 16 10 H -0.26 -11.24 7.11 99.48 0.71 -10.53 16 11 H -0.29 -13.18 7.11 99.48 0.71 -12.47 16 12 H -0.26 -10.93 7.11 99.48 0.71 -10.22 16 13 C 0.20 7.91 6.58 137.64 0.91 8.81 16 14 N -0.33 -14.95 12.18 -49.54 -0.60 -15.55 16 15 N -0.36 -14.75 11.24 -58.01 -0.65 -15.40 16 16 C 0.35 11.20 7.21 260.11 1.88 13.07 16 17 N -0.45 -10.20 4.70 -706.14 -3.32 -13.52 16 18 C 0.08 1.69 4.63 86.32 0.40 2.09 16 19 C -0.09 -1.56 4.18 30.64 0.13 -1.44 16 20 C -0.05 -0.66 0.71 -52.85 -0.04 -0.69 16 21 C -0.14 -1.49 7.83 71.98 0.56 -0.92 16 22 C 0.50 7.01 6.93 71.24 0.49 7.50 16 23 O -0.55 -11.81 16.73 21.97 0.37 -11.45 16 24 O -0.50 -3.92 13.26 -51.35 -0.68 -4.60 16 25 C -0.09 -0.95 4.82 30.65 0.15 -0.80 16 26 C 0.05 0.67 5.03 86.33 0.43 1.10 16 27 N -0.48 -14.83 3.21 -538.17 -1.73 -16.55 16 28 C 0.06 1.16 9.15 127.77 1.17 2.33 16 29 H 0.07 2.67 6.95 -2.39 -0.02 2.66 16 30 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 31 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 32 H -0.01 -0.77 8.14 -2.39 -0.02 -0.79 16 33 H -0.02 -1.40 8.14 -2.39 -0.02 -1.42 16 34 H 0.26 15.38 8.31 -92.71 -0.77 14.61 16 35 H 0.06 1.31 6.51 -2.39 -0.02 1.29 16 36 H 0.07 1.99 7.92 -2.39 -0.02 1.97 16 37 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 38 H 0.07 1.46 8.04 -2.39 -0.02 1.44 16 39 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 40 H 0.07 0.84 4.93 -2.38 -0.01 0.82 16 41 H 0.09 0.65 8.11 -2.39 -0.02 0.63 16 42 H 0.43 0.13 9.10 -74.06 -0.67 -0.54 16 43 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 44 H 0.12 0.65 8.14 -2.39 -0.02 0.63 16 45 H 0.06 0.85 6.52 -2.38 -0.02 0.84 16 46 H 0.10 1.18 5.23 -2.38 -0.01 1.16 16 47 H 0.11 1.30 7.75 -2.38 -0.02 1.28 16 48 H 0.09 1.87 7.24 -2.39 -0.02 1.85 16 49 H 0.11 1.61 7.66 -2.39 -0.02 1.59 16 Total: -1.00 -82.53 385.93 3.50 -79.02 By element: Atomic # 1 Polarization: 8.13 SS G_CDS: 0.30 Total: 8.43 kcal Atomic # 6 Polarization: -5.15 SS G_CDS: 7.50 Total: 2.36 kcal Atomic # 7 Polarization: -113.10 SS G_CDS: -6.01 Total: -119.11 kcal Atomic # 8 Polarization: -15.73 SS G_CDS: -0.31 Total: -16.05 kcal Atomic # 14 Polarization: 43.32 SS G_CDS: 2.03 Total: 45.35 kcal Total: -82.53 3.50 -79.02 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001603141635.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.983 kcal (2) G-P(sol) polarization free energy of solvation -82.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.025 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds