Wall clock time and date at job start Tue Mar 31 2020 20:57:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08994 * 109.47023 * 2 1 4 4 C 1.52998 * 109.47523 * 239.99254 * 2 1 3 5 5 C 1.50699 * 109.46700 * 65.00024 * 4 2 1 6 6 H 1.07999 * 120.00803 * 0.02562 * 5 4 2 7 7 C 1.37881 * 119.99889 * 180.02562 * 5 4 2 8 8 N 1.31520 * 120.00186 * 180.02562 * 7 5 4 9 9 Si 1.86798 * 120.00030 * 0.02562 * 7 5 4 10 10 H 1.48506 * 109.47297 * 89.99863 * 9 7 5 11 11 H 1.48503 * 109.47261 * 330.00044 * 9 7 5 12 12 H 1.48500 * 109.47454 * 210.00037 * 9 7 5 13 13 C 1.50706 * 109.46995 * 119.99412 * 2 1 3 14 14 N 1.30297 * 126.34622 * 60.02181 * 13 2 1 15 15 N 1.28526 * 110.05297 * 180.02562 * 14 13 2 16 16 C 1.31217 * 109.85849 * 0.02562 * 15 14 13 17 17 N 1.38590 * 126.47199 * 180.02562 * 16 15 14 18 18 C 1.48554 * 111.00116 * 115.39242 * 17 16 15 19 19 C 1.54371 * 104.59588 * 200.96086 * 18 17 16 20 20 C 1.54254 * 105.06131 * 23.85688 * 19 18 17 21 21 C 1.48560 * 110.99751 * 359.97438 * 17 16 15 22 22 H 1.09001 * 110.41628 * 40.14224 * 21 17 16 23 23 C 1.52998 * 110.41442 * 277.82036 * 21 17 16 24 24 O 1.43754 * 109.62905 * 299.36743 * 23 21 17 25 25 C 1.44787 * 104.81380 * 215.80716 * 24 23 21 26 26 C 1.54911 * 101.72207 * 36.10120 * 25 24 23 27 27 O 1.43365 * 109.63421 * 180.02562 * 23 21 17 28 28 N 1.36449 * 107.05860 * 359.73844 * 16 15 14 29 29 C 1.46494 * 127.14406 * 180.26357 * 28 16 15 30 30 H 1.09008 * 109.47033 * 60.00904 * 1 2 3 31 31 H 1.09004 * 109.47207 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47257 * 300.00762 * 1 2 3 33 33 H 1.09004 * 109.47139 * 305.00400 * 4 2 1 34 34 H 1.08997 * 109.47675 * 185.00000 * 4 2 1 35 35 H 0.96998 * 120.00124 * 180.02562 * 8 7 5 36 36 H 1.09003 * 110.41245 * 319.74040 * 18 17 16 37 37 H 1.09005 * 110.41410 * 82.18152 * 18 17 16 38 38 H 1.09005 * 110.32774 * 264.95567 * 19 18 17 39 39 H 1.09008 * 110.41032 * 142.79732 * 19 18 17 40 40 H 1.09002 * 110.32089 * 241.10354 * 20 19 18 41 41 H 1.08999 * 110.41406 * 118.94163 * 20 19 18 42 42 H 1.09004 * 109.63045 * 59.60350 * 23 21 17 43 43 H 1.08999 * 110.97714 * 277.99225 * 25 24 23 44 44 H 1.09003 * 111.00716 * 154.22633 * 25 24 23 45 45 H 1.09002 * 110.69615 * 206.04263 * 26 25 24 46 46 H 1.08998 * 110.84273 * 82.90916 * 26 25 24 47 47 H 1.09005 * 109.47377 * 270.20240 * 29 28 16 48 48 H 1.09004 * 109.46959 * 30.19361 * 29 28 16 49 49 H 1.08998 * 109.47839 * 150.19735 * 29 28 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7214 -1.2491 5 6 1.6414 0.0568 -2.4765 6 1 1.0807 0.9743 -2.3758 7 6 1.9925 -0.4026 -3.7282 8 7 1.6450 0.2768 -4.7994 9 14 2.9617 -1.9899 -3.9026 10 1 2.0216 -3.1337 -4.0192 11 1 3.8236 -2.1775 -2.7080 12 1 3.8102 -1.9207 -5.1193 13 6 2.0323 -0.7103 1.2306 14 7 1.7953 -1.9490 1.5581 15 7 2.3759 -2.2297 2.6698 16 6 3.0193 -1.1764 3.1151 17 7 3.7616 -1.0972 4.2828 18 6 5.1975 -0.8587 3.9857 19 6 5.9402 -1.3243 5.2564 20 6 4.9878 -2.3334 5.9303 21 6 3.7496 -2.3925 5.0101 22 1 3.8341 -3.2230 4.3091 23 6 2.4724 -2.5257 5.8418 24 8 2.4118 -1.4625 6.8074 25 6 1.8076 -2.0607 7.9793 26 6 2.4044 -3.4898 7.9464 27 8 2.4784 -3.7799 6.5363 28 7 2.8249 -0.1756 2.2082 29 6 3.3533 1.1893 2.2703 30 1 -0.3633 0.5137 -0.8901 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3634 0.5140 0.8899 33 1 1.6054 -1.7200 -1.2949 34 1 3.1264 -0.7996 -1.2055 35 1 1.8917 -0.0466 -5.6800 36 1 5.5107 -1.4490 3.1246 37 1 5.3778 0.2014 3.8069 38 1 6.1252 -0.4782 5.9183 39 1 6.8797 -1.8093 4.9914 40 1 4.7053 -1.9825 6.9229 41 1 5.4580 -3.3145 5.9959 42 1 1.6022 -2.4732 5.1875 43 1 0.7219 -2.0890 7.8872 44 1 2.1067 -1.5336 8.8854 45 1 1.7437 -4.1950 8.4508 46 1 3.3975 -3.5058 8.3954 47 1 2.6475 1.8284 2.8010 48 1 4.3074 1.1859 2.7973 49 1 3.4981 1.5693 1.2590 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001646689799.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:57:36 Heat of formation + Delta-G solvation = 5.441171 kcal Electronic energy + Delta-G solvation = -30605.113314 eV Core-core repulsion = 26569.302711 eV Total energy + Delta-G solvation = -4035.810604 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.75844 -40.82192 -38.83410 -35.50693 -35.19799 -34.67879 -32.63557 -31.92723 -31.33584 -28.86229 -28.39328 -27.42376 -27.36239 -24.70777 -24.03544 -23.47110 -22.47303 -21.94041 -20.85937 -20.30339 -18.96021 -17.61800 -17.43586 -16.98732 -16.94722 -16.35531 -16.03435 -15.89391 -15.34681 -14.73850 -14.45719 -14.26527 -13.92365 -13.67670 -13.66394 -13.45567 -13.18219 -13.15825 -12.99841 -12.85111 -12.64061 -12.46137 -11.99030 -11.91855 -11.63660 -11.57849 -11.38754 -11.16220 -11.10114 -10.87119 -10.81638 -10.48710 -10.43587 -10.12043 -10.03042 -9.84407 -9.80193 -9.78245 -9.45148 -9.18481 -8.54592 -8.09535 -6.06455 -4.04957 1.98720 2.37663 3.09356 3.20511 3.34023 3.40903 3.47163 3.52108 3.92410 4.13809 4.26637 4.35571 4.45946 4.54221 4.58667 4.66802 4.77220 4.84174 4.90150 5.03530 5.08326 5.12633 5.14923 5.21333 5.23613 5.26961 5.28371 5.36467 5.51456 5.51856 5.54743 5.64045 5.65278 5.74585 5.92910 5.93940 5.96868 6.10968 6.19156 6.38938 6.64105 6.69282 6.72548 6.86724 7.00660 7.19223 7.30204 7.38404 7.74165 8.47827 8.96114 9.10698 9.56100 11.06135 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.019043 B = 0.002882 C = 0.002819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1469.982741 B = 9711.983765 C = 9928.490806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.008 3.992 3 H 0.078 0.922 4 C 0.001 3.999 5 C -0.518 4.518 6 H 0.077 0.923 7 C 0.071 3.929 8 N -0.901 5.901 9 Si 0.876 3.124 10 H -0.274 1.274 11 H -0.267 1.267 12 H -0.288 1.288 13 C 0.211 3.789 14 N -0.284 5.284 15 N -0.322 5.322 16 C 0.322 3.678 17 N -0.414 5.414 18 C 0.033 3.967 19 C -0.118 4.118 20 C -0.115 4.115 21 C 0.071 3.929 22 H 0.096 0.904 23 C 0.252 3.748 24 O -0.359 6.359 25 C 0.012 3.988 26 C 0.020 3.980 27 O -0.377 6.377 28 N -0.480 5.480 29 C 0.075 3.925 30 H 0.080 0.920 31 H 0.060 0.940 32 H 0.034 0.966 33 H 0.027 0.973 34 H 0.013 0.987 35 H 0.263 0.737 36 H 0.057 0.943 37 H 0.091 0.909 38 H 0.078 0.922 39 H 0.076 0.924 40 H 0.081 0.919 41 H 0.077 0.923 42 H 0.093 0.907 43 H 0.075 0.925 44 H 0.107 0.893 45 H 0.099 0.901 46 H 0.075 0.925 47 H 0.080 0.920 48 H 0.085 0.915 49 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.038 -1.247 27.916 28.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.013 4.013 3 H 0.097 0.903 4 C -0.037 4.037 5 C -0.556 4.556 6 H 0.095 0.905 7 C -0.131 4.131 8 N -0.540 5.540 9 Si 0.703 3.297 10 H -0.200 1.200 11 H -0.192 1.192 12 H -0.215 1.215 13 C -0.057 4.057 14 N -0.122 5.122 15 N -0.167 5.167 16 C -0.035 4.035 17 N -0.139 5.139 18 C -0.094 4.094 19 C -0.157 4.157 20 C -0.153 4.153 21 C -0.037 4.037 22 H 0.114 0.886 23 C 0.157 3.843 24 O -0.279 6.279 25 C -0.065 4.065 26 C -0.057 4.057 27 O -0.298 6.298 28 N -0.175 5.175 29 C -0.068 4.068 30 H 0.099 0.901 31 H 0.079 0.921 32 H 0.053 0.947 33 H 0.045 0.955 34 H 0.031 0.969 35 H 0.073 0.927 36 H 0.075 0.925 37 H 0.109 0.891 38 H 0.096 0.904 39 H 0.095 0.905 40 H 0.099 0.901 41 H 0.095 0.905 42 H 0.110 0.890 43 H 0.093 0.907 44 H 0.126 0.874 45 H 0.117 0.883 46 H 0.093 0.907 47 H 0.098 0.902 48 H 0.104 0.896 49 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 6.374 -2.196 27.850 28.654 hybrid contribution 1.250 0.051 -0.470 1.337 sum 7.624 -2.146 27.380 28.502 Atomic orbital electron populations 1.21689 0.93076 1.02589 1.01159 1.19760 0.96617 0.97598 0.87287 0.90334 1.19591 0.95912 0.96648 0.91553 1.21022 1.36039 1.09703 0.88848 0.90529 1.24943 0.95435 0.96831 0.95849 1.69899 1.46830 1.39213 0.98049 0.86839 0.80795 0.84504 0.77559 1.19982 1.19192 1.21454 1.25618 0.94633 0.92048 0.93405 1.73980 1.20227 1.11272 1.06750 1.74525 1.14368 1.20596 1.07181 1.22689 1.03450 0.86393 0.90948 1.62010 1.08372 1.31200 1.12350 1.23305 0.85265 1.02369 0.98441 1.22267 0.98092 0.99467 0.95835 1.22278 0.93894 0.99713 0.99459 1.22973 0.95200 0.90306 0.95240 0.88649 1.23811 0.97376 0.74246 0.88905 1.89334 1.81763 1.32853 1.23993 1.24399 0.98903 0.92890 0.90297 1.24195 1.01692 0.96797 0.82992 1.88916 1.95483 1.28051 1.17309 1.46104 1.40455 1.12154 1.18742 1.22122 1.00159 0.79566 1.04922 0.90144 0.92109 0.94688 0.95465 0.96889 0.92677 0.92468 0.89124 0.90352 0.90549 0.90083 0.90482 0.88967 0.90708 0.87448 0.88265 0.90685 0.90157 0.89627 0.88585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.40 8.99 37.16 0.33 -2.07 16 2 C 0.01 0.17 2.70 -91.77 -0.25 -0.08 16 3 H 0.08 1.44 6.94 -51.93 -0.36 1.08 16 4 C 0.00 0.03 3.50 -27.88 -0.10 -0.07 16 5 C -0.52 -14.20 8.96 -34.44 -0.31 -14.51 16 6 H 0.08 2.19 7.30 -52.49 -0.38 1.81 16 7 C 0.07 2.04 5.47 -17.82 -0.10 1.94 16 8 N -0.90 -27.27 13.96 55.43 0.77 -26.50 16 9 Si 0.88 22.12 27.47 -169.99 -4.67 17.45 16 10 H -0.27 -6.90 7.11 56.52 0.40 -6.49 16 11 H -0.27 -6.67 6.54 56.52 0.37 -6.30 16 12 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 13 C 0.21 4.09 6.58 -154.01 -1.01 3.07 16 14 N -0.28 -6.09 12.18 32.99 0.40 -5.69 16 15 N -0.32 -6.32 10.55 30.32 0.32 -6.00 16 16 C 0.32 5.34 6.75 -318.87 -2.15 3.19 16 17 N -0.41 -5.50 5.03 -162.68 -0.82 -6.32 16 18 C 0.03 0.35 5.91 -2.19 -0.01 0.33 16 19 C -0.12 -0.95 7.00 -25.36 -0.18 -1.13 16 20 C -0.12 -1.06 6.27 -25.35 -0.16 -1.22 16 21 C 0.07 0.89 2.05 -66.07 -0.14 0.76 16 22 H 0.10 1.39 7.42 -51.93 -0.39 1.00 16 23 C 0.25 3.23 3.75 37.16 0.14 3.37 16 24 O -0.36 -4.19 10.18 -59.04 -0.60 -4.79 16 25 C 0.01 0.09 7.95 38.17 0.30 0.39 16 26 C 0.02 0.15 8.07 38.17 0.31 0.45 16 27 O -0.38 -4.44 11.01 -59.04 -0.65 -5.09 16 28 N -0.48 -7.80 3.21 -121.46 -0.39 -8.19 16 29 C 0.08 0.86 10.84 59.84 0.65 1.51 16 30 H 0.08 1.59 6.95 -51.92 -0.36 1.23 16 31 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 32 H 0.03 0.58 8.14 -51.93 -0.42 0.15 16 33 H 0.03 0.69 7.57 -51.93 -0.39 0.29 16 34 H 0.01 0.32 7.20 -51.93 -0.37 -0.06 16 35 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 36 H 0.06 0.67 7.97 -51.93 -0.41 0.26 16 37 H 0.09 0.80 6.11 -51.93 -0.32 0.49 16 38 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.08 0.51 8.14 -51.92 -0.42 0.09 16 40 H 0.08 0.73 7.04 -51.93 -0.37 0.36 16 41 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.09 1.44 7.62 -51.93 -0.40 1.04 16 43 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 44 H 0.11 0.54 8.14 -51.93 -0.42 0.11 16 45 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 46 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 47 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 48 H 0.09 0.79 5.54 -51.93 -0.29 0.50 16 49 H 0.10 1.06 7.23 -51.93 -0.38 0.69 16 LS Contribution 383.76 15.07 5.78 5.78 Total: -1.00 -34.66 383.76 -10.32 -44.98 By element: Atomic # 1 Polarization: 6.21 SS G_CDS: -7.81 Total: -1.60 kcal Atomic # 6 Polarization: -1.38 SS G_CDS: -2.67 Total: -4.04 kcal Atomic # 7 Polarization: -52.98 SS G_CDS: 0.29 Total: -52.69 kcal Atomic # 8 Polarization: -8.63 SS G_CDS: -1.25 Total: -9.88 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -4.67 Total: 17.45 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -34.66 -10.32 -44.98 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001646689799.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.424 kcal (2) G-P(sol) polarization free energy of solvation -34.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.983 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds